Back to Long Tests report for BioC 3.20

This page was generated on 2025-01-04 23:55 -0500 (Sat, 04 Jan 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4744
palomino8Windows Server 2022 Datacenterx644.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" 4487
merida1macOS 12.7.5 Montereyx86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4515
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 6/32HostnameOS / ArchCHECK
biodbChebi 1.12.0  (landing page)
Pierrick Roger
Snapshot Date: 2025-01-04 09:55 -0500 (Sat, 04 Jan 2025)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: RELEASE_3_20
git_last_commit: e6b963e
git_last_commit_date: 2024-10-29 11:04:35 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK  
palomino8Windows Server 2022 Datacenter / x64  OK  
merida1macOS 12.7.5 Monterey / x86_64  OK  

CHECK results for biodbChebi on nebbiolo2

To the developers/maintainers of the biodbChebi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbChebi
Version: 1.12.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.12.0.tar.gz
StartedAt: 2025-01-04 16:01:06 -0500 (Sat, 04 Jan 2025)
EndedAt: 2025-01-04 16:04:43 -0500 (Sat, 04 Jan 2025)
EllapsedTime: 217.1 seconds
RetCode: 0
Status:   OK  
CheckDir: biodbChebi.Rcheck
Warnings: 0

Tests output

biodbChebi.Rcheck/tests/testthat.Rout


R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

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Type 'license()' or 'licence()' for distribution details.

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Type 'demo()' for some demos, 'help()' for on-line help, or
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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-01-04 16:01:40.922][biodb::testContext]
biodb.INFO [2025-01-04 16:01:40.924][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-04 16:01:40.925][biodb::testContext] Test context - Generic long tests
biodb.INFO [2025-01-04 16:01:40.926][biodb::testContext] ********************************************************************************
biodb.INFO [2025-01-04 16:01:40.927][biodb::testContext]
biodb.INFO [2025-01-04 16:01:40.934][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-01-04 16:01:40.936][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-01-04 16:01:40.943][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-04 16:01:40.944][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-01-04 16:01:40.946][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-01-04 16:01:40.946][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:40.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:40.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:40.949][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-01-04 16:01:40.969][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-01-04 16:01:40.970][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:40.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:40.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:40.973][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-01-04 16:01:40.974][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-01-04 16:01:40.975][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:40.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:40.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:40.978][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-01-04 16:01:40.979][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-01-04 16:01:40.980][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-01-04 16:01:40.981][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:40.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:40.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:40.984][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-01-04 16:01:40.985][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-01-04 16:01:40.986][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-01-04 16:01:40.987][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:40.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:40.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:40.990][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-01-04 16:01:40.991][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-01-04 16:01:40.992][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:40.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:40.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:40.995][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-01-04 16:01:40.996][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-01-04 16:01:40.997][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-01-04 16:01:40.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:40.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:40.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.000][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-01-04 16:01:41.002][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-01-04 16:01:41.002][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.005][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-01-04 16:01:41.006][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-01-04 16:01:41.007][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-01-04 16:01:41.008][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.011][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-01-04 16:01:41.012][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-01-04 16:01:41.013][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-01-04 16:01:41.014][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-01-04 16:01:41.015][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-01-04 16:01:41.016][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-01-04 16:01:41.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.020][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-01-04 16:01:41.021][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-01-04 16:01:41.022][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.025][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-01-04 16:01:41.026][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-01-04 16:01:41.027][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.030][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-01-04 16:01:41.031][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-01-04 16:01:41.032][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.034][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-01-04 16:01:41.036][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-01-04 16:01:41.036][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.039][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-01-04 16:01:41.040][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-01-04 16:01:41.041][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.044][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-01-04 16:01:41.045][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-01-04 16:01:41.049][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-01-04 16:01:41.050][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.053][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-01-04 16:01:41.054][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-01-04 16:01:41.055][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-01-04 16:01:41.056][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.061][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-01-04 16:01:41.097][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-04 16:01:41.115][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-01-04 16:01:41.116][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-04 16:01:41.117][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-04 16:01:41.118][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-04 16:01:41.119][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-04 16:01:41.120][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-04 16:01:41.128][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-04 16:01:41.129][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-04 16:01:41.130][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-04 16:01:41.131][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-04 16:01:41.131][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-01-04 16:01:41.132][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-04 16:01:41.133][self$setPropertyValue]
biodb.DEBUG[2025-01-04 16:01:41.134][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-04 16:01:41.135][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-04 16:01:41.135][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-04 16:01:41.135][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-04 16:01:41.135][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-04 16:01:41.135][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-04 16:01:41.136][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-04 16:01:41.137][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-04 16:01:41.137][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-04 16:01:41.138][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-04 16:01:41.139][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-04 16:01:41.140][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-04 16:01:41.141][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-04 16:01:41.141][self$setPropertyValue]
biodb.DEBUG[2025-01-04 16:01:41.142][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-04 16:01:41.143][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-04 16:01:41.144][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-04 16:01:41.145][self$setPropertyValue]
biodb.DEBUG[2025-01-04 16:01:41.146][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-01-04 16:01:41.147][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-04 16:01:41.148][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-01-04 16:01:41.149][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-04 16:01:41.150][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-04 16:01:41.151][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-04 16:01:41.152][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-04 16:01:41.153][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-04 16:01:41.154][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-04 16:01:41.155][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-04 16:01:41.155][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-04 16:01:41.156][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-04 16:01:41.157][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-01-04 16:01:41.158][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-04 16:01:41.159][self$setPropertyValue]
biodb.DEBUG[2025-01-04 16:01:41.160][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-04 16:01:41.161][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-04 16:01:41.161][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-04 16:01:41.161][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-04 16:01:41.161][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-01-04 16:01:41.161][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-01-04 16:01:41.162][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-04 16:01:41.163][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-04 16:01:41.163][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-04 16:01:41.164][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-04 16:01:41.165][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-04 16:01:41.166][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-04 16:01:41.167][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-04 16:01:41.168][self$setPropertyValue]
biodb.DEBUG[2025-01-04 16:01:41.168][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-04 16:01:41.169][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-04 16:01:41.170][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-04 16:01:41.171][self$setPropertyValue]
biodb.DEBUG[2025-01-04 16:01:41.172][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-01-04 16:01:41.174][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-04 16:01:41.174][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-01-04 16:01:41.175][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-04 16:01:41.176][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-04 16:01:41.177][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-04 16:01:41.178][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-04 16:01:41.179][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-04 16:01:41.180][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-04 16:01:41.181][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-01-04 16:01:41.182][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-04 16:01:41.182][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-04 16:01:41.183][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-01-04 16:01:41.184][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-04 16:01:41.185][self$setPropertyValue]
biodb.DEBUG[2025-01-04 16:01:41.186][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-04 16:01:41.187][self$setPropertyValue]
biodb.DEBUG[2025-01-04 16:01:41.188][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-04 16:01:41.189][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-04 16:01:41.189][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-04 16:01:41.190][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-04 16:01:41.191][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-04 16:01:41.192][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-04 16:01:41.193][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-04 16:01:41.194][self$setPropertyValue]
biodb.DEBUG[2025-01-04 16:01:41.194][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-04 16:01:41.195][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-04 16:01:41.196][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-04 16:01:41.197][self$setPropertyValue]
biodb.DEBUG[2025-01-04 16:01:41.198][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-01-04 16:01:41.199][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-01-04 16:01:41.200][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-01-04 16:01:41.201][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-04 16:01:41.202][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-04 16:01:41.203][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-04 16:01:41.204][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-04 16:01:41.205][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-01-04 16:01:41.206][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-01-04 16:01:41.207][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-01-04 16:01:41.207][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-04 16:01:41.208][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-01-04 16:01:41.209][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-01-04 16:01:41.210][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-04 16:01:41.211][self$setPropertyValue]
biodb.DEBUG[2025-01-04 16:01:41.212][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-01-04 16:01:41.213][self$setPropertyValue]
biodb.DEBUG[2025-01-04 16:01:41.214][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-01-04 16:01:41.214][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-04 16:01:41.215][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-04 16:01:41.216][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-04 16:01:41.217][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-04 16:01:41.218][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-04 16:01:41.219][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-04 16:01:41.219][self$setPropertyValue]
biodb.DEBUG[2025-01-04 16:01:41.220][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-04 16:01:41.221][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-04 16:01:41.222][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-01-04 16:01:41.223][self$setPropertyValue]
biodb.DEBUG[2025-01-04 16:01:41.226][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-04 16:01:41.227][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.229][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.233][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.237][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.241][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.244][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.252][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.260][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.264][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.268][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.272][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.276][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.280][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.284][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.288][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.292][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.296][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-01-04 16:01:41.300][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-01-04 16:01:41.301][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-01-04 16:01:41.302][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-01-04 16:01:41.304][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-01-04 16:01:41.305][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-01-04 16:01:41.306][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-01-04 16:01:41.308][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-01-04 16:01:41.309][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-01-04 16:01:41.310][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-01-04 16:01:41.311][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-01-04 16:01:41.313][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-01-04 16:01:41.314][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-01-04 16:01:41.315][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-01-04 16:01:41.316][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-01-04 16:01:41.318][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-01-04 16:01:41.319][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-01-04 16:01:41.320][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-01-04 16:01:41.321][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-01-04 16:01:41.322][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-01-04 16:01:41.324][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-01-04 16:01:41.325][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-01-04 16:01:41.326][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-01-04 16:01:41.327][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-01-04 16:01:41.329][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-01-04 16:01:41.336][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-01-04 16:01:41.340][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-01-04 16:01:41.342][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-01-04 16:01:41.343][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-01-04 16:01:41.345][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-01-04 16:01:41.346][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-01-04 16:01:41.347][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-01-04 16:01:41.349][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-01-04 16:01:41.350][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-01-04 16:01:41.352][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-01-04 16:01:41.353][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-01-04 16:01:41.354][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-01-04 16:01:41.356][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-01-04 16:01:41.357][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-01-04 16:01:41.359][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-01-04 16:01:41.360][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-01-04 16:01:41.361][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-01-04 16:01:41.363][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-01-04 16:01:41.364][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-01-04 16:01:41.365][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-01-04 16:01:41.367][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-01-04 16:01:41.368][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-01-04 16:01:41.370][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-01-04 16:01:41.371][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-01-04 16:01:41.372][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-01-04 16:01:41.374][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-01-04 16:01:41.393][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-01-04 16:01:41.395][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-01-04 16:01:41.396][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-01-04 16:01:41.397][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-01-04 16:01:41.399][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-01-04 16:01:41.400][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-01-04 16:01:41.401][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-01-04 16:01:41.403][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-01-04 16:01:41.404][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-01-04 16:01:41.405][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-01-04 16:01:41.407][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-01-04 16:01:41.408][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-01-04 16:01:41.409][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-01-04 16:01:41.411][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-01-04 16:01:41.412][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-01-04 16:01:41.413][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-01-04 16:01:41.415][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-01-04 16:01:41.416][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-01-04 16:01:41.418][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-01-04 16:01:41.419][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-01-04 16:01:41.421][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-01-04 16:01:41.422][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-01-04 16:01:41.424][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-01-04 16:01:41.425][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-01-04 16:01:41.427][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-01-04 16:01:41.428][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-01-04 16:01:41.430][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-01-04 16:01:41.431][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-01-04 16:01:41.433][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-01-04 16:01:41.434][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-01-04 16:01:41.435][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-01-04 16:01:41.437][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-01-04 16:01:41.443][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-01-04 16:01:41.444][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-01-04 16:01:41.448][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-01-04 16:01:41.449][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.450][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.456][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:41.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:41.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.462][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:41.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:41.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.468][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:41.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:41.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.474][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:41.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:41.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.480][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:41.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:41.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.486][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:41.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:41.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.492][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:41.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:41.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.498][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:41.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:41.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.504][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:41.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:41.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.510][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:41.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:41.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.516][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:41.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:41.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.522][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:41.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:41.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:41.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:41.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.534][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:41.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:41.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.540][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:41.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:41.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.546][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:41.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:41.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.552][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-01-04 16:01:41.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:41.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:41.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:41.558][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2025-01-04 16:01:41.568][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-01-04 16:01:41.570][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-01-04 16:01:41.571][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-01-04 16:01:41.572][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-01-04 16:01:41.573][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-01-04 16:01:41.574][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-01-04 16:01:41.575][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-01-04 16:01:41.576][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-01-04 16:01:41.577][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-01-04 16:01:41.578][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-01-04 16:01:41.579][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-01-04 16:01:41.580][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-01-04 16:01:41.581][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-01-04 16:01:41.582][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-01-04 16:01:41.583][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-01-04 16:01:41.583][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-01-04 16:01:41.583][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-01-04 16:01:41.583][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-01-04 16:01:41.583][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-01-04 16:01:41.583][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-01-04 16:01:41.583][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-01-04 16:01:41.583][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-01-04 16:01:41.583][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-01-04 16:01:41.583][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-01-04 16:01:41.583][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-01-04 16:01:41.584][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-01-04 16:01:41.585][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-01-04 16:01:41.585][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-01-04 16:01:41.585][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-01-04 16:01:41.586][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-01-04 16:01:41.586][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-04 16:01:41.587][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-04 16:01:41.588][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-01-04 16:01:41.589][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-01-04 16:01:41.590][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-01-04 16:01:41.591][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-01-04 16:01:41.592][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:01:41.592][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-01-04 16:01:41.593][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-01-04 16:01:41.593][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-01-04 16:01:41.594][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-01-04 16:01:41.595][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-01-04 16:01:41.595][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-01-04 16:01:41.601][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-01-04 16:01:41.603][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-01-04 16:01:41.604][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-01-04 16:01:41.605][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-01-04 16:01:41.607][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-01-04 16:01:41.608][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-01-04 16:01:41.630][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-01-04 16:01:41.631][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2025-01-04 16:01:41.634][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2025-01-04 16:01:41.638][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2025-01-04 16:01:41.642][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-04 16:01:41.643][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-01-04 16:01:41.644][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2025-01-04 16:01:41.645][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-01-04 16:01:41.659][biodb::testThat]
biodb.INFO [2025-01-04 16:01:41.660][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-01-04 16:01:41.661][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-04 16:01:41.662][biodb::testThat]
biodb.TRACE[2025-01-04 16:01:41.665][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-01-04 16:01:41.667][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:01:41.669][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:01:41.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:41.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:41.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:41.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:41.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:41.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:41.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:01:41.701][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:41.702][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:41.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.703][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:41.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:41.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.719][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:41.720][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:41.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.722][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.745][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:41.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:41.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.749][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:41.750][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:41.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.751][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.753][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:41.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:41.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.756][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:41.757][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:41.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.759][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.760][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:41.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:41.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.763][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:41.764][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:41.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.766][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.767][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:41.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:41.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.771][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:41.772][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:41.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.773][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.774][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:41.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:41.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.778][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:41.779][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:41.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.781][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.782][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:41.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:41.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.785][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:41.786][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:41.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.788][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:41.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:41.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.793][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:41.793][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:41.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.795][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.796][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:41.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:41.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.800][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:41.801][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:41.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.803][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.804][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:41.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:41.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.807][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:41.808][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:41.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.810][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.811][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:41.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:41.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:41.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:41.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:41.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:41.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:41.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:41.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:41.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:41.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:41.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:41.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:41.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:41.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:41.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:41.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:41.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:41.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:41.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:41.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:41.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:41.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:41.886][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-01-04 16:01:41.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:41.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:41.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.892][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:41.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:41.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.915][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:41.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:41.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:41.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:41.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:41.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:41.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:41.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:41.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.929][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-04 16:01:41.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-04 16:01:41.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.933][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-04 16:01:41.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-04 16:01:41.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.936][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-04 16:01:41.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-04 16:01:41.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.940][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-04 16:01:41.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-04 16:01:41.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:41.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:41.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:41.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:41.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:41.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:41.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:41.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:41.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:41.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:41.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:41.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:41.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:41.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:41.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:41.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:41.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:41.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:41.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:42.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:42.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:42.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:42.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:42.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:42.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.027][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:42.028][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:42.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.030][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:42.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:42.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.052][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.052][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.054][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.065][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:42.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:42.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.068][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:42.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:42.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.072][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:42.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:42.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.096][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:42.097][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:42.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.098][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.099][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:42.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:42.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.109][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:42.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:42.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.113][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:42.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:42.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.116][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:42.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:42.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.120][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:42.121][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:42.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.122][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.123][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:42.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:42.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.143][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.144][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.146][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:42.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:42.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:42.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:42.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:42.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:42.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.167][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:42.168][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:42.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.170][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:42.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:42.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.180][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:42.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:42.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.184][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:42.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:42.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.187][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:42.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:42.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.191][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:42.192][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:42.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.193][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.194][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:42.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:42.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.204][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:01:42.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:42.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.207][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:01:42.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:42.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.211][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:01:42.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:42.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.214][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:01:42.215][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:42.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.217][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.218][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:01:42.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:42.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.228][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:42.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:42.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.231][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:42.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:42.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.235][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:42.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:42.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.238][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:42.239][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:42.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.241][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.242][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:42.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:42.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.251][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:42.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:42.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.255][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:42.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:42.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.258][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:42.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:42.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.262][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:42.263][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:42.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.265][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.265][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:42.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:42.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:42.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:42.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:42.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:42.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:42.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:42.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.286][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:42.287][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:42.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.288][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:42.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:42.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:42.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:42.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.306][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:42.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:42.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:42.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:42.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.314][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:42.314][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:42.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.316][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:42.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:42.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.327][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:42.328][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:42.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.329][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.333][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:42.334][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:42.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.336][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.340][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:42.341][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:42.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.342][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.346][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:42.347][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:42.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.349][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.352][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:42.353][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:42.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.355][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.359][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:42.360][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:42.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.361][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.365][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.366][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.368][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.371][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:42.372][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:42.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.374][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.377][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:01:42.378][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:42.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.380][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.384][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:42.385][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:42.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.386][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.390][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:42.391][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:42.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.392][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.407][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2025-01-04 16:01:42.438][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:01:42.439][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:01:42.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:42.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:42.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:42.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:42.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:42.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:42.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:01:42.450][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:42.451][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:42.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.453][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:42.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:42.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.472][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:42.473][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:42.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.475][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.476][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:42.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:42.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.479][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:42.480][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:42.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.486][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.488][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:42.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:42.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.491][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:42.492][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:42.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.495][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:42.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:42.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.499][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:42.500][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:42.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.502][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.503][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:42.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:42.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.507][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:42.508][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:42.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.510][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.511][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:42.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:42.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.514][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:42.515][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.517][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.518][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:42.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.522][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:42.522][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:42.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.524][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:42.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:42.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.529][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:42.530][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:42.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.531][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:42.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:42.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.536][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:42.537][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:42.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.539][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.540][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:42.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:42.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.543][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:42.544][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:42.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.546][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.547][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:42.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:42.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:42.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:42.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:42.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:42.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:42.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:42.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:42.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:42.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:42.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:42.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:42.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:42.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:42.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:42.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:42.586][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2025-01-04 16:01:42.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:42.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:42.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:42.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:42.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:42.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:42.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:42.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:42.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.626][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-04 16:01:42.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-04 16:01:42.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.629][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-04 16:01:42.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-04 16:01:42.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.633][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-04 16:01:42.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-04 16:01:42.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.636][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-04 16:01:42.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-04 16:01:42.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:42.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:42.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:42.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:42.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:42.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:42.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:42.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:42.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:42.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:42.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:42.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:42.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:42.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:42.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:42.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:42.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:42.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:42.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:42.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:42.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.715][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:42.716][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:42.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.718][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:42.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:42.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.739][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.740][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.741][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:42.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.752][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:42.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:42.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.755][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:42.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:42.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.759][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:42.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:42.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.762][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:42.763][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:42.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.765][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.766][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:42.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:42.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.775][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:42.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:42.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.779][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:42.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:42.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.782][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:42.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:42.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.786][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:42.787][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:42.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.788][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.789][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:42.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:42.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.799][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:42.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.802][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.809][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:42.810][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.812][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.813][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:42.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:42.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:42.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:42.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:42.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:42.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:42.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.833][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:42.834][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:42.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.836][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:42.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:42.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.856][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.857][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.859][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:42.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.869][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:42.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:42.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.873][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:42.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:42.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.876][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:42.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:42.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.880][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:42.881][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:42.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.883][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.883][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:42.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:42.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.897][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:01:42.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:42.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.900][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:01:42.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:42.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.904][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:01:42.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:42.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.907][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:01:42.908][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:42.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.910][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.911][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:01:42.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:42.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.920][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:42.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:42.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.924][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:42.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:42.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.927][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:42.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:42.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.931][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:42.932][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:42.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.933][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.934][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:42.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:42.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.944][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:42.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:42.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.947][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:42.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:42.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.951][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:42.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:42.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.954][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:42.955][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:42.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.957][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.958][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:42.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:42.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.967][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:42.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:42.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:42.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:42.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.974][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:42.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:42.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.978][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:42.979][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:42.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.980][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.981][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:42.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:42.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:42.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:42.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:42.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:42.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:42.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:42.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:42.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:42.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.001][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:43.002][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:43.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.004][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:43.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:43.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.014][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.015][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.017][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.020][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:43.021][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:43.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.023][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.026][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:43.027][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:43.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.029][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.033][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:43.033][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:43.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.035][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.039][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.040][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.041][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.045][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:43.046][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:43.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.048][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.051][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:43.052][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:43.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.054][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.057][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:43.058][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:43.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.060][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.064][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:01:43.064][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:43.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.066][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.070][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:43.071][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:43.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.072][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.076][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:43.077][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:43.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.079][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.082][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2025-01-04 16:01:43.087][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:01:43.089][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:01:43.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:43.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:43.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:43.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:43.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:43.097][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:43.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:01:43.099][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.100][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.102][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.107][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:43.108][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:43.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.109][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.110][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:43.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:43.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.114][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:43.115][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:43.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.117][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.118][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:43.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:43.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.121][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:43.122][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:43.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.124][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:43.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:43.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.128][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.129][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.131][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.136][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:43.137][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:43.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.138][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.139][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:43.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:43.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.143][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:43.144][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:43.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.145][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.146][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:43.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:43.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.150][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:43.151][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:43.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.153][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:43.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:43.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.157][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:43.158][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:43.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.160][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.161][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:43.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:43.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.165][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:43.166][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:43.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.167][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.168][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:43.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:43.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.172][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:43.173][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:43.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.174][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.175][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:43.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:43.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:43.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:43.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:43.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:43.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:43.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:43.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:43.214][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2025-01-04 16:01:43.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:43.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:43.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.219][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:43.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:43.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.226][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:43.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:43.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:43.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:43.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.237][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-04 16:01:43.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-04 16:01:43.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.240][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-04 16:01:43.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-04 16:01:43.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.244][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-04 16:01:43.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-04 16:01:43.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.247][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-04 16:01:43.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-04 16:01:43.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:43.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:43.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:43.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:43.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:43.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:43.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:43.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:43.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.317][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.318][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.319][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.330][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:43.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:43.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.333][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:43.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:43.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.337][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:43.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:43.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.340][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:43.341][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:43.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.343][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.344][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:43.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:43.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.353][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:43.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:43.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:43.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:43.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:43.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:43.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.364][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:43.365][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:43.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.366][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.367][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:43.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:43.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.380][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.384][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.387][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.388][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.390][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.391][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.400][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:43.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:43.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.404][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:43.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:43.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.407][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:43.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:43.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.411][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:43.412][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:43.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.413][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.414][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:43.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:43.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:43.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:43.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:43.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:43.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:43.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:43.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.434][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:43.435][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:43.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.437][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:43.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:43.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:43.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:43.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:43.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:43.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:43.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:43.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.458][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:43.459][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:43.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.460][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:43.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:43.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.471][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:43.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:43.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.474][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:43.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:43.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.478][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:43.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:43.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.481][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:43.482][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:43.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.484][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.485][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:43.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:43.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.498][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:01:43.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:43.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.501][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:01:43.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:43.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.505][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:01:43.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:43.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.508][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:01:43.509][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:43.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.511][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.512][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:01:43.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:43.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.521][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:43.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:43.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.525][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:43.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:43.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.528][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:43.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:43.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.532][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:43.533][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:43.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.535][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.535][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:43.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:43.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.545][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:43.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:43.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.548][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:43.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:43.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.552][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:43.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:43.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.555][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:43.556][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:43.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.558][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.559][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:43.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:43.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.568][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.569][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.571][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.575][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:43.576][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:43.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.577][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.581][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:43.582][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:43.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.584][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.587][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:43.588][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:43.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.590][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.593][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.594][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.596][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.599][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:43.600][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:43.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.602][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.606][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:43.607][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:43.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.608][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.612][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:43.613][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:43.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.615][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.618][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:01:43.619][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:43.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.621][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.624][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:43.625][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:43.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.627][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.630][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:43.631][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:43.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.633][ef$get] fields variable is a list.
biodb.INFO [2025-01-04 16:01:43.639][biodb::testThat]
biodb.INFO [2025-01-04 16:01:43.640][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-01-04 16:01:43.641][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-04 16:01:43.642][biodb::testThat]
biodb.DEBUG[2025-01-04 16:01:43.643][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2025-01-04 16:01:43.650][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2025-01-04 16:01:43.654][cch$loadFileContent] Trying to load 3 files from cache: [3]: "15440, 2528, 7799".
biodb.TRACE[2025-01-04 16:01:43.655][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2025-01-04 16:01:43.657][loadFileContents] Loaded 3 files from cache: [3]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml, /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2025-01-04 16:01:43.658][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:01:43.659][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-01-04 16:01:43.660][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-01-04 16:01:43.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:43.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:43.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:43.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:43.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:43.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:43.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:01:43.672][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.672][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.674][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.679][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:43.680][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:43.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.681][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.683][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:43.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:43.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.686][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:43.687][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:43.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.689][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.690][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:43.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:43.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.693][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:43.694][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:43.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.701][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.702][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:43.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:43.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.705][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.706][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.708][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.709][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.713][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:43.713][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:43.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.715][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.716][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:43.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:43.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.720][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:43.721][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:43.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.722][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.724][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:43.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:43.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.727][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:43.728][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:43.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.730][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:43.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:43.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.734][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:43.735][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:43.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.737][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.738][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:43.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:43.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.742][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:43.743][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:43.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.744][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.745][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:43.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:43.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.749][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:43.750][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:43.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.752][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.753][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:43.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:43.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:43.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:43.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:43.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:43.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:43.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:43.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:43.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:43.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:43.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:43.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:43.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:43.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:43.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:01:43.791][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.792][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.794][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.798][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:43.799][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:43.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.801][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.802][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:43.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:43.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.805][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:43.806][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:43.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.808][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.809][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:43.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:43.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.813][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:43.814][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:43.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.815][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:43.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:43.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.820][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.821][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.823][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.827][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:43.828][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:43.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.830][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.831][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:43.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:43.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.834][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:43.835][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:43.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.837][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.838][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:43.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:43.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.842][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:43.842][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:43.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.844][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:43.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:43.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.849][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:43.850][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:43.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.851][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.852][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:43.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:43.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.856][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:43.857][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:43.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.859][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.860][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:43.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:43.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.863][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:43.864][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:43.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.866][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.867][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:43.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:43.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:43.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:43.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:43.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:43.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:43.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:43.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:43.895][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:43.896][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:43.897][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:43.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:43.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:43.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:43.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:01:43.909][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.910][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.912][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.916][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:43.917][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:43.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.919][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.920][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:43.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:43.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.923][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:43.924][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:43.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.926][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.927][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:43.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:43.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.931][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:43.932][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:43.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.933][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:43.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:43.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.938][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.939][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.940][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:43.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.945][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:43.946][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:43.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.948][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.949][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:43.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:43.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.952][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:43.953][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:43.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.955][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.956][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:43.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:43.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.959][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:43.960][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:43.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.962][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:43.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:43.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.967][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:43.968][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:43.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.969][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.970][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:43.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:43.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.974][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:43.975][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:43.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.977][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.978][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:43.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:43.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.981][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:43.982][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:43.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.984][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.985][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:43.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:43.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:43.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:43.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:43.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:43.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:43.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:43.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:43.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:43.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:44.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:44.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:44.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:44.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:44.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:44.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:44.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:44.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:44.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:44.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:44.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:44.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:44.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:44.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:44.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:44.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:44.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:44.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:44.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:44.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:44.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:44.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:44.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:44.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:44.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:44.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:44.044][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2025-01-04 16:01:44.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-01-04 16:01:44.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-01-04 16:01:44.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-01-04 16:01:44.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-01-04 16:01:44.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-01-04 16:01:44.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-01-04 16:01:44.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-01-04 16:01:44.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-01-04 16:01:44.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-01-04 16:01:44.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-01-04 16:01:44.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-01-04 16:01:44.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-01-04 16:01:44.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-01-04 16:01:44.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-01-04 16:01:44.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-01-04 16:01:44.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-01-04 16:01:44.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-01-04 16:01:44.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-01-04 16:01:44.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-01-04 16:01:44.089][biodb::testThat]
biodb.INFO [2025-01-04 16:01:44.090][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-01-04 16:01:44.091][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-04 16:01:44.091][biodb::testThat]
biodb.TRACE[2025-01-04 16:01:44.094][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:44.095][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:44.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.097][ef$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:44.098][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2025-01-04 16:01:44.123][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:44.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:44.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.127][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:44.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:44.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.130][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:44.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:44.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:44.136][function(conn, opt)] With value "squalene".
biodb.DEBUG[2025-01-04 16:01:44.140][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2025-01-04 16:01:44.158][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:01:44.172][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2025-01-04 16:01:44.173][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:01:44.175][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2025-01-04 16:01:44.195][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:01:44.198][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:01:44.199][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-01-04 16:01:44.200][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:01:44.201][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-01-04 16:01:44.203][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2025-01-04 16:01:44.213][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:44.213][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:44.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.215][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.216][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:44.217][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:44.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.219][ef$get] fields variable is a list.
biodb.INFO [2025-01-04 16:01:44.222][biodb::testThat]
biodb.INFO [2025-01-04 16:01:44.223][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-01-04 16:01:44.224][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-04 16:01:44.224][biodb::testThat]
biodb.TRACE[2025-01-04 16:01:44.245][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:44.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:44.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.248][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:44.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:44.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.252][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:44.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:44.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:44.307][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:01:44.310][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:01:44.311][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-01-04 16:01:44.312][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:01:44.313][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2025-01-04 16:01:44.326][biodb::testThat]
biodb.INFO [2025-01-04 16:01:44.327][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-01-04 16:01:44.328][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-04 16:01:44.329][biodb::testThat]
biodb.TRACE[2025-01-04 16:01:44.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:44.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:44.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.340][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:44.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:44.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:44.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:44.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:44.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:44.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:44.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:44.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:44.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:44.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.358][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-04 16:01:44.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-04 16:01:44.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.361][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-04 16:01:44.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-04 16:01:44.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.365][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-04 16:01:44.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-04 16:01:44.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.368][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-04 16:01:44.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-04 16:01:44.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.380][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:44.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:44.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:44.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:44.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.387][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:44.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:44.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:44.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:44.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:44.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:44.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:44.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:44.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.401][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-04 16:01:44.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-04 16:01:44.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.404][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-01-04 16:01:44.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-01-04 16:01:44.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.408][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-01-04 16:01:44.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-01-04 16:01:44.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:44.411][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-01-04 16:01:44.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-01-04 16:01:44.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:44.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-01-04 16:01:44.419][biodb::testThat]
biodb.INFO [2025-01-04 16:01:44.420][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-01-04 16:01:44.421][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-04 16:01:44.422][biodb::testThat]
biodb.INFO [2025-01-04 16:01:44.429][biodb::testThat]
biodb.INFO [2025-01-04 16:01:44.430][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-01-04 16:01:44.431][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-04 16:01:44.432][biodb::testThat]
biodb.INFO [2025-01-04 16:01:44.440][biodb::testThat]
biodb.INFO [2025-01-04 16:01:44.441][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-01-04 16:01:44.441][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-04 16:01:44.442][biodb::testThat]
biodb.DEBUG[2025-01-04 16:01:44.445][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2025-01-04 16:01:46.803][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2025-01-04 16:01:49.159][biodb::testThat]
biodb.INFO [2025-01-04 16:01:49.161][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-01-04 16:01:49.163][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-04 16:01:49.165][biodb::testThat]
biodb.DEBUG[2025-01-04 16:01:49.837][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2025-01-04 16:01:50.509][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:50.512][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:50.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:50.515][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:50.516][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:50.518][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:50.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:50.520][ef$get] fields variable is a list.
biodb.INFO [2025-01-04 16:01:50.524][biodb::testThat]
biodb.INFO [2025-01-04 16:01:50.525][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-01-04 16:01:50.526][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-04 16:01:50.528][biodb::testThat]
biodb.TRACE[2025-01-04 16:01:50.542][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:50.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:50.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:50.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:50.548][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:50.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:50.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:50.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:50.553][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:50.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:50.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:50.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:50.658][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:01:50.662][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:01:50.663][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-01-04 16:01:50.664][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:01:50.666][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-01-04 16:01:50.724][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:01:50.727][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:01:50.729][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-01-04 16:01:50.730][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:01:50.731][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2025-01-04 16:01:50.743][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-04 16:01:50.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-04 16:01:50.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:50.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:50.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:50.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:50.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:50.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:50.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:50.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:50.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:50.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:50.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:50.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:50.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:50.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:50.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:50.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:50.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:50.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:50.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:50.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:50.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:50.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:50.773][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:01:50.776][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:01:50.777][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-01-04 16:01:50.778][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:01:50.780][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-01-04 16:01:50.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:50.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:50.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:50.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:50.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:50.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:50.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:50.792][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2025-01-04 16:01:50.839][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:01:50.840][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2025-01-04 16:01:50.842][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:01:50.843][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:01:50.844][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:01:50.844][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:01:50.845][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:01:50.846][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:01:50.849][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:50.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:50.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:50.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:50.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:50.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:50.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:50.858][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.DEBUG[2025-01-04 16:01:50.860][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:01:50.861][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:01:50.862][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.TRACE[2025-01-04 16:01:51.238][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288).
biodb.DEBUG[2025-01-04 16:01:51.597][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:01:51.601][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.content"
biodb.TRACE[2025-01-04 16:01:51.633][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.request"
biodb.TRACE[2025-01-04 16:01:51.638][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml"
biodb.DEBUG[2025-01-04 16:01:51.640][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:01:51.642][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:01:51.644][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:01:51.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:51.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:51.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:51.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:51.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:51.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:51.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:01:51.661][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:51.663][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:51.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.665][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:51.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:51.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.671][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:51.672][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:51.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.674][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.675][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:51.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:51.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.679][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:51.680][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:51.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.682][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.683][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:51.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:51.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.687][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:51.688][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:51.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.689][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:51.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:51.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.694][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:51.695][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:51.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.697][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:51.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:51.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.701][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:51.702][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:51.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.704][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.705][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:51.706][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:51.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.708][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.709][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:51.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:51.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.713][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:51.713][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:51.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.715][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:51.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:51.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.720][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:51.721][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:51.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.723][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.724][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:51.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:51.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.727][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:51.728][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:51.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.730][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.731][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:51.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:51.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.742][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:51.743][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:51.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.745][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.746][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:51.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:51.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:51.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:51.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:51.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:51.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:51.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:51.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:51.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:51.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:51.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:51.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:51.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:51.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:51.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:51.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:51.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:51.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:51.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:51.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:51.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:51.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:51.785][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2025-01-04 16:01:51.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:51.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:51.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:51.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:51.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:51.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:51.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:51.805][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:01:51.808][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:01:51.809][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-01-04 16:01:51.810][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:01:51.812][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-01-04 16:01:51.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:51.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:51.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:51.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:51.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:51.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:51.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:01:51.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:51.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:51.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.838][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:51.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:51.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:51.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:51.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:51.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:51.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:51.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:51.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:51.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:51.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:51.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:51.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:51.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:51.854][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2025-01-04 16:01:51.855][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:01:51.856][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2025-01-04 16:01:51.857][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:01:51.858][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:01:51.859][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:01:51.860][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:01:51.861][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:01:51.862][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:01:51.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:51.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:51.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:51.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:51.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:51.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:51.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:51.884][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.DEBUG[2025-01-04 16:01:51.901][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:01:51.902][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:01:51.916][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.TRACE[2025-01-04 16:01:52.287][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892).
biodb.DEBUG[2025-01-04 16:01:52.638][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:01:52.642][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.content"
biodb.TRACE[2025-01-04 16:01:52.649][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.request"
biodb.TRACE[2025-01-04 16:01:52.654][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml"
biodb.DEBUG[2025-01-04 16:01:52.657][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:01:52.659][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:01:52.662][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:01:52.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:52.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:52.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:52.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:52.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:52.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:52.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:01:52.687][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:52.689][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:52.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.692][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:52.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:52.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.700][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:52.701][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:52.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.703][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.705][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:52.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:52.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.710][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:52.711][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:52.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.713][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.715][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:52.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:52.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.719][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:52.720][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:52.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.722][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.723][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:52.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:52.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.727][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:52.728][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:52.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.730][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:52.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:52.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.735][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:52.736][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:52.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.737][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.739][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:52.740][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:52.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.741][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.742][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:52.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:52.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.746][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:52.747][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:52.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.749][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:52.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:52.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.753][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:52.754][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:52.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.756][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.757][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:52.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:52.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.761][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:52.762][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:52.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.763][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.765][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:52.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:52.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.768][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:52.769][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:52.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.771][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.772][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:52.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:52.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:52.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:52.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:52.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:52.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:52.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:52.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:52.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:52.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:52.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:52.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:52.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:52.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:52.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:52.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:52.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:52.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:52.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:52.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:52.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:52.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:52.818][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2025-01-04 16:01:52.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:52.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:52.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:52.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:52.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:52.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:52.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:52.845][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:01:52.848][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:01:52.849][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-01-04 16:01:52.851][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:01:52.852][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-01-04 16:01:52.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:52.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:52.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:52.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:52.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:52.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:52.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:01:52.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:52.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:52.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:52.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:52.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:52.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:52.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:52.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:52.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:52.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:52.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:52.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:52.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:52.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:52.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:52.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:52.883][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2025-01-04 16:01:52.884][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:01:52.885][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2025-01-04 16:01:52.887][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:01:52.887][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:01:52.888][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:01:52.889][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:01:52.890][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:01:52.891][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:01:52.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:52.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:52.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:52.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:52.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:52.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:52.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:52.908][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.DEBUG[2025-01-04 16:01:52.912][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:01:52.913][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:01:52.915][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.TRACE[2025-01-04 16:01:53.288][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747).
biodb.DEBUG[2025-01-04 16:01:53.639][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:01:53.645][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.content"
biodb.TRACE[2025-01-04 16:01:53.651][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.request"
biodb.TRACE[2025-01-04 16:01:53.656][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml"
biodb.DEBUG[2025-01-04 16:01:53.658][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:01:53.661][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:01:53.664][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:01:53.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:53.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:53.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:53.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:53.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:53.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:53.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:01:53.697][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:53.698][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:53.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:53.700][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:53.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:53.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:53.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:53.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:53.706][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:53.707][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:53.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:53.709][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:53.711][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:53.712][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:53.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:53.714][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:53.715][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:53.716][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:53.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:53.718][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:53.719][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:53.720][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:53.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:53.722][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:53.723][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:53.724][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:53.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:53.726][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:53.727][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:53.729][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:53.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:53.730][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:53.732][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:53.733][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:53.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:53.735][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:53.736][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:53.737][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:53.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:53.739][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:53.740][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:53.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:53.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:53.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:53.744][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:53.745][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:53.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:53.747][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:53.749][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:53.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:53.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:53.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:53.769][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:53.770][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:53.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:53.771][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:53.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:53.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:53.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:53.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:53.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:53.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:53.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:53.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:53.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:53.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:53.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:53.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:53.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:53.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:53.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:53.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:53.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:53.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:53.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:53.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:53.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:53.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:53.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:53.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:53.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:53.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:53.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:53.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:53.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:53.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:53.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:53.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:53.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:53.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:53.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:53.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:53.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:53.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:53.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:53.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:53.812][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2025-01-04 16:01:53.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:53.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:53.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:53.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:53.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:53.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:53.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:53.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:53.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:53.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:53.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:53.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:53.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:53.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:53.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:53.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:53.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:53.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:53.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:53.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:53.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:53.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:53.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:53.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:53.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:53.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:53.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:53.843][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2025-01-04 16:01:53.844][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:01:53.846][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2025-01-04 16:01:53.847][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:01:53.848][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:01:53.849][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:01:53.850][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:01:53.851][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:01:53.852][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:01:53.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:53.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:53.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:53.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:53.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:53.862][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:53.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:53.864][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.DEBUG[2025-01-04 16:01:53.867][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:01:53.868][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:01:53.869][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.TRACE[2025-01-04 16:01:54.241][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285).
biodb.DEBUG[2025-01-04 16:01:54.598][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:01:54.602][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.content"
biodb.TRACE[2025-01-04 16:01:54.609][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.request"
biodb.TRACE[2025-01-04 16:01:54.614][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml"
biodb.DEBUG[2025-01-04 16:01:54.617][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:01:54.620][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:01:54.622][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:01:54.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:54.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:54.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:54.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:54.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:54.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:54.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:01:54.648][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:54.650][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:54.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:54.653][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:54.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:54.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:54.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:54.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:54.660][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:54.662][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:54.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:54.664][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:54.665][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:54.667][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:54.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:54.669][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:54.671][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:54.672][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:54.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:54.674][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:54.675][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:54.676][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:54.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:54.678][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:54.680][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:54.681][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:54.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:54.683][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:54.684][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:54.685][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:54.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:54.687][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:54.688][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:54.689][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:54.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:54.691][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:54.692][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:54.693][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:54.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:54.694][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:54.696][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:54.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:54.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:54.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:54.700][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:54.700][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:54.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:54.710][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:54.711][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:54.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:54.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:54.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:54.715][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:54.715][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:54.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:54.717][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:54.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:54.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:54.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:54.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:54.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:54.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:54.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:54.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:54.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:54.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:54.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:54.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:54.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:54.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:54.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:54.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:54.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:54.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:54.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:54.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:54.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:54.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:54.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:54.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:54.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:54.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:54.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:54.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:54.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:54.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:54.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:54.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:54.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:54.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:54.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:54.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:54.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:54.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:54.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:54.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:54.754][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2025-01-04 16:01:54.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:54.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:54.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:54.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:54.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:54.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:54.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:54.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:54.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:54.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:54.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:54.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:54.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:54.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:54.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:54.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:54.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:54.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:54.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:54.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:54.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:54.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:54.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:54.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:54.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:54.780][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:54.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:54.782][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2025-01-04 16:01:54.783][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:01:54.785][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2025-01-04 16:01:54.786][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:01:54.787][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:01:54.788][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:01:54.789][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:01:54.790][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:01:54.790][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:01:54.793][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:54.794][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:54.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:54.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:54.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:54.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:54.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:54.802][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.DEBUG[2025-01-04 16:01:54.805][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:01:54.806][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:01:54.807][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.TRACE[2025-01-04 16:01:55.165][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174).
biodb.DEBUG[2025-01-04 16:01:55.514][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:01:55.516][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.content"
biodb.TRACE[2025-01-04 16:01:55.519][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.request"
biodb.TRACE[2025-01-04 16:01:55.522][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml"
biodb.DEBUG[2025-01-04 16:01:55.523][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:01:55.525][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:01:55.526][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:01:55.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:55.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:55.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:55.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:55.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:55.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:55.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:01:55.538][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:55.539][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:55.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:55.541][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:55.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:55.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:55.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:55.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:55.547][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:55.548][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:55.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:55.549][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:55.551][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:55.552][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:55.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:55.553][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:55.555][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:55.556][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:55.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:55.558][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:55.559][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:55.560][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:55.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:55.562][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:55.563][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:55.564][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:55.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:55.566][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:55.567][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:55.568][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:55.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:55.569][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:55.570][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:55.571][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:55.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:55.573][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:55.574][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:55.575][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:55.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:55.577][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:55.578][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:55.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:55.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:55.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:55.590][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:55.591][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:55.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:55.593][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:55.594][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:55.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:55.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:55.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:55.598][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:55.599][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:55.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:55.600][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:55.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:55.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:55.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:55.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:55.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:55.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:55.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:55.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:55.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:55.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:55.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:55.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:55.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:55.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:55.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:55.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:55.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:55.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:55.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:55.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:55.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:55.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:55.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:55.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:55.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:55.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:55.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:55.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:55.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:55.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:55.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:55.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:55.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:55.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:55.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:55.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:55.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:55.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:55.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:55.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:55.637][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2025-01-04 16:01:55.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:55.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:55.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:55.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:55.641][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:55.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:55.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:55.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:55.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:55.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:55.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:55.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:55.649][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:55.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:55.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:55.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:55.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:55.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:55.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:55.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:55.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:55.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:55.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:55.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:55.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:55.663][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:55.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:55.665][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2025-01-04 16:01:55.666][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:01:55.667][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2025-01-04 16:01:55.668][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:01:55.669][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:01:55.670][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:01:55.671][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:01:55.672][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:01:55.673][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:01:55.676][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:55.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:55.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:55.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:55.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:55.683][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:55.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:55.685][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.DEBUG[2025-01-04 16:01:55.687][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:01:55.688][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:01:55.690][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.TRACE[2025-01-04 16:01:56.077][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441).
biodb.DEBUG[2025-01-04 16:01:56.431][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:01:56.434][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.content"
biodb.TRACE[2025-01-04 16:01:56.440][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.request"
biodb.TRACE[2025-01-04 16:01:56.446][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml"
biodb.DEBUG[2025-01-04 16:01:56.449][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:01:56.451][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:01:56.454][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:01:56.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:56.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:56.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:56.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:56.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:56.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:56.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:01:56.478][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:56.479][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:56.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.482][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:56.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:56.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:56.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:56.489][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:56.490][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:56.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.492][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:56.494][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:56.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:56.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:56.499][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:56.500][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:56.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.502][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:56.503][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:56.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:56.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:56.507][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:56.508][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:56.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.510][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:56.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:56.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:56.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:56.515][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:56.516][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:56.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.518][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:56.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:56.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:56.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:56.556][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:56.557][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:56.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.559][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:56.560][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:56.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:56.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:56.563][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:56.564][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:56.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.566][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:56.567][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:56.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:56.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:56.571][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:56.572][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:56.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.574][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:56.575][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:56.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:56.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:56.578][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:56.579][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:56.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.581][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:56.582][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:56.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:56.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:56.586][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:56.587][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:56.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.588][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:56.590][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:56.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:56.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:56.593][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:56.594][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:56.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.596][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:56.597][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:56.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:56.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:56.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:56.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:56.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:56.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:56.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:56.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:56.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:56.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:56.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:56.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:56.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:56.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:56.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:56.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:56.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:56.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:56.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:56.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:56.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:56.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:56.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:56.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:56.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:56.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:56.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:56.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:56.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:56.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:56.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:56.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:56.636][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2025-01-04 16:01:56.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:56.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:56.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:56.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:56.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:56.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:56.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:56.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:56.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:56.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:56.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:56.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:56.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:56.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:56.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:56.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:56.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:56.657][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2025-01-04 16:01:56.658][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:01:56.660][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2025-01-04 16:01:56.661][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:01:56.662][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:01:56.663][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:01:56.664][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:01:56.665][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:01:56.666][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:01:56.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:56.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:56.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:56.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:56.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:56.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:56.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:56.678][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.DEBUG[2025-01-04 16:01:56.680][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:01:56.681][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:01:56.682][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.TRACE[2025-01-04 16:01:57.072][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442).
biodb.DEBUG[2025-01-04 16:01:57.423][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:01:57.428][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.content"
biodb.TRACE[2025-01-04 16:01:57.435][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.request"
biodb.TRACE[2025-01-04 16:01:57.440][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml"
biodb.DEBUG[2025-01-04 16:01:57.443][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:01:57.446][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:01:57.449][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:01:57.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:57.454][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:57.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:57.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:57.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:57.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:57.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:01:57.475][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:57.476][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:57.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.479][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:57.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:57.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:57.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:57.487][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:57.488][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:57.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.491][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:57.493][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:57.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:57.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:57.506][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:57.507][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:57.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.509][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:57.510][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:57.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:57.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:57.514][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:57.515][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:57.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.517][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:57.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:57.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:57.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:57.522][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:57.523][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:57.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.524][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:57.525][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:57.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:57.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:57.529][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:57.530][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:57.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.532][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:57.533][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:57.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:57.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:57.536][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:57.537][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:57.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.539][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:57.540][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:57.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:57.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:57.543][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:57.544][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:57.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.546][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:57.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:57.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:57.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:57.551][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:57.552][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:57.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.553][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:57.555][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:57.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:57.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:57.558][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:57.559][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:57.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.561][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:57.562][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:57.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:57.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:57.565][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:57.566][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:57.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.568][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:57.569][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:57.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:57.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:57.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:57.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:57.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:57.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:57.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:57.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:57.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:57.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:57.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:57.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:57.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:57.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:57.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:57.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:57.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:57.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:57.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:57.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:57.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:57.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:57.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:57.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:57.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:57.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:57.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:57.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:57.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:57.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:57.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:57.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:57.609][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2025-01-04 16:01:57.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:57.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:57.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:57.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:57.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:57.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:57.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:57.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:57.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:57.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:57.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:57.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:57.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:57.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:57.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:57.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:57.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:57.630][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2025-01-04 16:01:57.631][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:01:57.633][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2025-01-04 16:01:57.634][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:01:57.635][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:01:57.636][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:01:57.637][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:01:57.638][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:01:57.638][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:01:57.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:57.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:57.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:57.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:57.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:57.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:57.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:57.650][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.DEBUG[2025-01-04 16:01:57.653][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:01:57.653][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:01:57.655][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.TRACE[2025-01-04 16:01:58.018][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310).
biodb.DEBUG[2025-01-04 16:01:58.377][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:01:58.382][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.content"
biodb.TRACE[2025-01-04 16:01:58.389][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.request"
biodb.TRACE[2025-01-04 16:01:58.394][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml"
biodb.DEBUG[2025-01-04 16:01:58.397][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:01:58.400][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:01:58.409][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:01:58.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:58.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:58.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:58.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:58.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:58.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:58.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:01:58.438][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:58.439][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:58.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.442][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:58.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:58.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.448][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:58.450][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:58.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.452][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.453][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:58.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:58.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.457][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:58.459][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:58.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.460][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.462][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:58.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:58.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.466][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:58.467][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:58.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.468][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:58.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:58.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.473][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:58.474][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:58.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.476][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.477][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:58.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:58.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.480][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:58.481][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:58.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.483][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.484][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:58.485][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:58.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.487][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.488][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:58.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:58.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.491][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:58.492][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:58.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.494][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:58.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:58.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.499][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:58.500][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:58.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.501][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.502][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:58.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:58.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.506][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:58.507][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:58.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.509][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.510][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:58.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:58.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.513][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:58.514][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:58.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.516][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.517][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:58.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:58.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:58.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:58.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:58.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:58.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:58.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:58.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:58.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:58.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:58.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:58.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:58.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:58.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:58.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:58.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:58.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:58.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:58.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:58.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:58.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:58.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:58.557][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2025-01-04 16:01:58.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:58.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:58.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:58.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:58.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:58.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:58.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:58.569][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:58.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:58.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:58.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:58.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:58.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:58.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:58.578][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2025-01-04 16:01:58.579][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:01:58.580][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2025-01-04 16:01:58.582][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:01:58.583][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml".
biodb.DEBUG[2025-01-04 16:01:58.584][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:01:58.585][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:01:58.586][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:01:58.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:58.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:58.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:58.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:58.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:58.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:58.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:01:58.603][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:58.604][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:58.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.605][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:58.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:58.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.610][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:58.611][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:58.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.613][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.614][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:58.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:58.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.618][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:58.619][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:58.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.620][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.621][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:58.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:58.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.625][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:58.626][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:58.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.628][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.629][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:58.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:58.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.632][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:58.633][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:58.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.635][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:58.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:58.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.639][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:58.640][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:58.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.642][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.643][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:58.644][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:58.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.646][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.647][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:58.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:58.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.650][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:58.651][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:58.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.653][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:58.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:58.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.658][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:58.659][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:58.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.660][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.661][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:58.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:58.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.665][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:58.666][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:58.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.668][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.669][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:58.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:58.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.672][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:58.673][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:58.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.675][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.676][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:58.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:58.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:58.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:58.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:58.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:58.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:58.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:58.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:58.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:58.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:58.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:58.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:58.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:58.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:58.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:58.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:58.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:58.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:58.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:58.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:58.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:58.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:58.722][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2025-01-04 16:01:58.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:58.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:58.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:58.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:58.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:58.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:58.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:58.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:58.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:58.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:58.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:58.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:58.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:58.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:58.754][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2025-01-04 16:01:58.755][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:01:58.758][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2025-01-04 16:01:58.759][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:01:58.761][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml".
biodb.DEBUG[2025-01-04 16:01:58.762][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:01:58.764][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:01:58.765][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:01:58.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:58.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:58.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:58.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:58.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:58.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:58.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:01:58.781][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:58.782][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:58.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.784][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:58.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:58.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.806][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:58.807][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:58.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.809][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.811][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:58.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:58.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.815][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:58.816][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:58.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.818][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.819][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:58.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:58.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.823][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:58.824][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:58.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.826][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:58.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:58.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.831][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:58.832][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:58.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.834][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:58.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:58.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.839][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:58.840][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:58.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.842][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.843][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:58.844][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:58.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.846][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.847][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:58.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:58.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.851][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:58.852][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:58.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.854][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:58.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:58.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.859][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:58.860][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:58.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.862][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:58.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:58.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.867][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:58.868][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:58.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.870][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.871][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:58.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:58.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.875][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:58.876][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:58.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.878][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.879][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:58.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:58.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:58.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:58.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:58.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:58.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:58.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:58.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:58.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:58.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:58.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:58.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:58.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:58.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:58.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:58.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:58.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:58.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:58.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:58.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:58.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:58.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:58.922][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2025-01-04 16:01:58.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:58.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:58.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:58.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:58.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:58.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:58.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:58.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:58.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:58.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:58.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:58.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:58.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:58.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:58.944][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2025-01-04 16:01:58.945][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:01:58.946][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2025-01-04 16:01:58.947][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:01:58.949][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml".
biodb.DEBUG[2025-01-04 16:01:58.950][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:01:58.951][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:01:58.952][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:01:58.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:58.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:58.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:58.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:58.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:58.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:58.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:01:58.963][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:58.964][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:58.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.966][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:58.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:58.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.970][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:58.971][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:58.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.973][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.974][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:58.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:58.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.978][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:58.983][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:58.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.985][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.986][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:58.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:58.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.989][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:58.990][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:58.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.992][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:58.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:58.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:58.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:58.997][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:58.998][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:58.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.000][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:59.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:59.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.004][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:59.005][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:59.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.007][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.008][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:59.009][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.011][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.012][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:59.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.015][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:59.016][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:59.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.018][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:59.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:59.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.022][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:59.023][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:59.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.025][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.026][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:59.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:59.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.030][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:59.031][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:59.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.032][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.033][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:59.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:59.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.037][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:59.038][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:59.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.040][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.041][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:59.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:59.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:59.079][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2025-01-04 16:01:59.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:59.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:59.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:59.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:59.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:59.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:59.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:59.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:59.100][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2025-01-04 16:01:59.101][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:01:59.103][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2025-01-04 16:01:59.104][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:01:59.105][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml".
biodb.DEBUG[2025-01-04 16:01:59.106][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:01:59.107][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:01:59.108][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:01:59.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:59.110][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:59.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:59.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:59.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:59.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:59.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:01:59.120][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.120][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.122][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.127][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:59.128][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:59.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.130][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.131][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:59.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:59.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.134][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:59.135][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:59.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.137][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.138][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:59.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:59.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.142][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:59.143][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:59.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.148][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.150][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:59.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:59.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.153][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:59.154][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:59.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.156][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.157][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:59.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:59.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.161][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:59.162][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:59.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.163][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.164][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:59.165][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.167][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.168][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:59.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.172][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:59.173][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:59.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.174][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:59.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:59.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.179][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:59.180][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:59.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.182][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.183][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:59.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:59.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.186][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:59.187][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:59.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.189][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.190][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:59.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:59.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.194][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:59.195][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:59.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.196][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.197][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:59.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:59.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:59.236][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2025-01-04 16:01:59.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:59.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:59.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:59.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:59.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:59.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:59.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:59.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:59.257][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2025-01-04 16:01:59.258][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:01:59.260][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2025-01-04 16:01:59.261][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:01:59.262][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml".
biodb.DEBUG[2025-01-04 16:01:59.263][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:01:59.264][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:01:59.265][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:01:59.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:59.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:59.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:59.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:59.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:59.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:59.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:01:59.277][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.278][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.280][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.284][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:59.285][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:59.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.287][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.288][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:59.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:59.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.292][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:59.293][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:59.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.294][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.295][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:59.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:59.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.299][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:59.300][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:59.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.302][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.303][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:59.304][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:59.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.305][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.306][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:59.307][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:59.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.313][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.314][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:59.315][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.317][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.318][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:59.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.322][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:59.323][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:59.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.324][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:59.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:59.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.329][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:59.330][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:59.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.332][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.333][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:59.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:59.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.337][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:59.338][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:59.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.339][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.340][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:59.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:59.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.344][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:59.345][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:59.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.346][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:59.383][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2025-01-04 16:01:59.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:59.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:59.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:59.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:59.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:59.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:59.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:59.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:59.403][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2025-01-04 16:01:59.404][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:01:59.406][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2025-01-04 16:01:59.407][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:01:59.408][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml".
biodb.DEBUG[2025-01-04 16:01:59.409][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:01:59.410][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:01:59.411][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:01:59.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:59.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:59.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:59.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:59.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:59.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:59.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:01:59.422][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.423][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.425][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.430][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:59.431][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:59.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.433][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.434][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:59.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:59.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.437][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:59.438][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:59.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.440][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.441][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:59.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:59.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.445][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:59.446][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:59.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.447][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.448][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:59.449][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:59.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.451][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.452][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:59.453][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:59.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.455][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.456][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:59.457][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.458][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.459][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:59.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.463][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:59.464][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:59.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.466][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:59.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:59.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.470][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:59.471][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:59.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.473][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.478][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:59.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:59.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.482][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:59.483][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:59.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.485][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.486][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:59.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:59.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.490][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:59.490][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:59.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.492][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:59.529][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2025-01-04 16:01:59.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:59.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:59.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:59.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:59.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:59.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:59.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:59.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:59.549][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2025-01-04 16:01:59.550][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:01:59.552][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2025-01-04 16:01:59.553][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:01:59.554][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml".
biodb.DEBUG[2025-01-04 16:01:59.555][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:01:59.556][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:01:59.557][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:01:59.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:59.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:59.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:59.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:59.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:59.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:59.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:01:59.569][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.570][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.571][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.576][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:59.577][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:59.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.579][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.580][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:59.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:59.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.584][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:59.585][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:59.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.586][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.587][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:59.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:59.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.591][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:59.592][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:59.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.594][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.595][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:59.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:59.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.598][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:59.599][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:59.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.601][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:59.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:59.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.606][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:59.607][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:59.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.608][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.610][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:59.611][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.612][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.613][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:59.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.617][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:59.618][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:59.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.620][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.621][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:59.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:59.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.624][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:59.625][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:59.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.627][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.628][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:59.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:59.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.632][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:59.633][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:59.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.634][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.635][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:59.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:59.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.643][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:59.644][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:59.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.646][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.647][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:59.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:59.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:59.686][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2025-01-04 16:01:59.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:59.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:59.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:59.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:59.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:59.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:59.705][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:59.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:59.707][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2025-01-04 16:01:59.708][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:01:59.709][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2025-01-04 16:01:59.710][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:01:59.712][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml".
biodb.DEBUG[2025-01-04 16:01:59.713][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:01:59.714][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:01:59.715][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:01:59.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:59.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:59.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:59.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:59.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:59.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:59.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:01:59.726][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.727][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.729][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.733][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:59.734][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:59.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.736][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.737][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:59.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:59.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.741][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:59.742][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:59.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.743][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.745][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:59.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:59.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.748][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:59.749][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:59.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.751][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:59.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:59.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.756][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:59.757][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:59.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.758][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.759][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:59.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:59.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.763][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:59.764][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:59.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.766][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.767][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:59.768][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.770][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.771][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:59.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.774][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:59.775][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:59.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.777][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:59.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:59.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.782][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:59.783][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:59.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.784][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.786][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:59.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:59.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.789][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:59.790][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:59.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.792][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.793][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:59.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:59.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.796][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:59.797][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:59.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.799][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.800][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:59.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:59.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:59.844][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2025-01-04 16:01:59.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:01:59.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:59.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:59.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:59.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:59.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:59.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:59.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:01:59.865][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2025-01-04 16:01:59.866][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:01:59.867][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2025-01-04 16:01:59.868][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:01:59.870][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml".
biodb.DEBUG[2025-01-04 16:01:59.871][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:01:59.872][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:01:59.873][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:01:59.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:01:59.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:01:59.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:01:59.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:01:59.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:01:59.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:01:59.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:01:59.884][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.885][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.887][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.891][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:59.892][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:59.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.894][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.895][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:01:59.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:01:59.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.899][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:59.900][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:59.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.901][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.902][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:01:59.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:01:59.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.906][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:59.907][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:59.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.909][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:01:59.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:01:59.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.913][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:59.914][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:59.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.916][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:01:59.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:01:59.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.921][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:59.922][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:01:59.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.923][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.924][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:59.925][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.927][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.928][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:01:59.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:01:59.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.932][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:59.933][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:59.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.935][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:59.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:01:59.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.939][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:59.940][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:59.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.942][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.943][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:01:59.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:01:59.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.947][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:59.948][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:59.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.949][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.950][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:01:59.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:01:59.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.954][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:59.955][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:59.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.957][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.958][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:01:59.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:01:59.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:01:59.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:01:59.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:01:59.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:01:59.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:01:59.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:00.002][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2025-01-04 16:02:00.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:00.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:00.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:00.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:00.019][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:00.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:00.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:00.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:00.022][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2025-01-04 16:02:00.023][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:00.025][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2025-01-04 16:02:00.026][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:02:00.027][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml".
biodb.DEBUG[2025-01-04 16:02:00.028][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:00.029][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:00.030][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:00.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:00.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:00.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:00.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:00.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:00.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:00.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:00.042][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.043][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.045][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.050][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:00.050][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:00.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.052][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.053][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:00.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:00.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.057][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:00.058][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:00.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.060][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.061][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:00.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:00.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.064][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:00.065][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:00.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.067][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.068][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:00.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:00.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.071][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:00.072][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:00.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.074][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:00.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:00.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.079][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:00.080][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:00.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.081][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.083][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:00.084][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.085][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.086][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:00.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.090][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:00.091][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:00.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.093][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:00.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:00.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.097][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:00.098][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:00.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.100][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.101][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:00.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:00.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.105][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:00.106][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:00.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.107][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.108][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:00.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:00.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.112][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:00.113][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:00.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.115][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.116][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:00.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:00.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:00.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:00.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:00.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:00.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:00.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:00.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:00.159][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2025-01-04 16:02:00.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:00.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:00.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:00.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:00.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:00.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:00.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:00.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:00.180][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2025-01-04 16:02:00.181][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:00.182][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2025-01-04 16:02:00.183][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:02:00.185][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml".
biodb.DEBUG[2025-01-04 16:02:00.186][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:00.187][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:00.188][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:00.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:00.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:00.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:00.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:00.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:00.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:00.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:00.199][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.200][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.202][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.207][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:00.207][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:00.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.209][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.210][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:00.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:00.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.214][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:00.215][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:00.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.217][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.218][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:00.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:00.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.221][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:00.222][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:00.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.224][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.225][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:00.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:00.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.229][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:00.229][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:00.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.231][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.232][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:00.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:00.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.236][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:00.237][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:00.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.238][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.240][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:00.241][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.242][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.243][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:00.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.247][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:00.248][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:00.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.250][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:00.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:00.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.254][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:00.255][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:00.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.257][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.258][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:00.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:00.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.262][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:00.263][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:00.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.265][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.266][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:00.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:00.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.269][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:00.270][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:00.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.272][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.273][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:00.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:00.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:00.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:00.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:00.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:00.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:00.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:00.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:00.317][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2025-01-04 16:02:00.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:00.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:00.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:00.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:00.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:00.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:00.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:00.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:00.337][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2025-01-04 16:02:00.338][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:00.340][cch$loadFileContent] Trying to load 1 files from cache: [1]: "198655".
biodb.TRACE[2025-01-04 16:02:00.341][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:02:00.342][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml".
biodb.DEBUG[2025-01-04 16:02:00.343][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:00.344][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:00.345][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:00.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:00.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:00.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:00.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:00.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:00.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:00.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:00.357][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.358][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.359][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.364][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:00.365][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:00.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.367][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.368][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:00.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:00.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.371][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:00.372][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:00.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.374][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.375][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:00.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:00.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.379][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:00.380][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:00.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.382][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:00.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:00.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.386][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:00.387][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:00.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.389][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:00.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:00.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.394][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:00.395][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:00.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.396][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.397][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:00.398][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.400][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.401][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:00.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.405][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:00.406][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:00.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.407][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:00.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:00.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.412][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:00.413][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:00.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.415][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.416][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:00.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:00.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.420][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:00.421][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:00.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.422][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.423][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:00.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:00.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.427][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:00.428][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:00.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.430][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.431][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:00.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:00.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:00.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:00.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:00.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:00.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:00.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:00.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:00.474][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2025-01-04 16:02:00.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:00.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:00.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:00.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:00.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:00.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:00.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:00.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:00.495][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2025-01-04 16:02:00.496][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:00.498][cch$loadFileContent] Trying to load 1 files from cache: [1]: "215045".
biodb.TRACE[2025-01-04 16:02:00.499][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:02:00.500][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml".
biodb.DEBUG[2025-01-04 16:02:00.501][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:00.502][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:00.503][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:00.505][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:00.506][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:00.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:00.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:00.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:00.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:00.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:00.515][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.516][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.517][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.522][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:00.523][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:00.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.525][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.526][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:00.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:00.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.529][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:00.530][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:00.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.532][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.533][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:00.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:00.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.537][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:00.538][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:00.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.539][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.540][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:00.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:00.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.544][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:00.545][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:00.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.547][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:00.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:00.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.551][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:00.552][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:00.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.554][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.555][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:00.556][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.558][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.559][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:00.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.562][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:00.563][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:00.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.565][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:00.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:00.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.570][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:00.570][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:00.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.572][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.573][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:00.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:00.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.577][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:00.578][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:00.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.580][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.581][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:00.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:00.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.584][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:00.585][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:00.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.587][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.588][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:00.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:00.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:00.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:00.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:00.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:00.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:00.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:00.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:00.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:00.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:00.632][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2025-01-04 16:02:00.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:00.658][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:00.661][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:02:00.662][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-01-04 16:02:00.663][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:02:00.665][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-01-04 16:02:00.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:00.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:00.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:00.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:00.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:00.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:00.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:00.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:00.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:00.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:00.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:00.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:00.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:00.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:00.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:00.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:00.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:00.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:00.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:00.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:00.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:00.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:00.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:00.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:00.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:00.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:00.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:00.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:00.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:00.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:00.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:00.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:00.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:00.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:00.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:00.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:00.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:00.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:00.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:00.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:00.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:00.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:00.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:00.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:00.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:00.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:00.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:00.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:00.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:00.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:00.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:00.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:00.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:00.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:00.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:00.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:00.829][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:00.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:00.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:00.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:00.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:00.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:00.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:00.838][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:00.849][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:00.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:00.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:00.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:00.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:00.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:00.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:00.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:00.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:00.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:00.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:00.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:00.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:00.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:00.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:00.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:00.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:00.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:00.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:00.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:00.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:00.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:00.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:00.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:00.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:00.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:00.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:00.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:00.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:00.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:00.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:00.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:00.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:00.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:00.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:00.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:00.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:00.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:00.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:00.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:00.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:00.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:00.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:00.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:00.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:00.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:00.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:00.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:00.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:00.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:00.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:00.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:00.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:00.977][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:00.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:00.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:00.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:00.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:00.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:00.990][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:00.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:00.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:00.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:00.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:00.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:00.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:00.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:01.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:01.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:01.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:01.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:01.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:01.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:01.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:01.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:01.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:01.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:01.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:01.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:01.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:01.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:01.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:01.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:01.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:01.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:01.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:01.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:01.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:01.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:01.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:01.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:01.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:01.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:01.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:01.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:01.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:01.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:01.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:01.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:01.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:01.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:01.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:01.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:01.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:01.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:01.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:01.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:01.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:01.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:01.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:01.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:01.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:01.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:01.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:01.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:01.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:01.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:01.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:01.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:01.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:01.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:01.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:01.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:01.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:01.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:01.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:01.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:01.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:01.144][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:01.147][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:02:01.148][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c5171beada848a87ef2ffa10427d9be3".
biodb.TRACE[2025-01-04 16:02:01.149][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:02:01.151][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content".
biodb.DEBUG[2025-01-04 16:02:01.154][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:01.156][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:02:01.157][cch$loadFileContent] Trying to load 1 files from cache: [1]: "750e63ff76a843f016511fa71c89113e".
biodb.TRACE[2025-01-04 16:02:01.159][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:02:01.160][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content".
biodb.DEBUG[2025-01-04 16:02:01.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:01.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:01.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:01.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:01.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:01.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:01.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:01.171][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2025-01-04 16:02:01.172][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:01.173][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2025-01-04 16:02:01.174][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:02:01.176][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml".
biodb.DEBUG[2025-01-04 16:02:01.177][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:01.178][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:01.179][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:01.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:01.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:01.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:01.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:01.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:01.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:01.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:01.190][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:01.191][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:01.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.193][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:01.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:01.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.197][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:01.198][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:01.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.200][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.201][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:01.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:01.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.205][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:01.206][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:01.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.207][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.209][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:01.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:01.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.212][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:01.213][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:01.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.215][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:01.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:01.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.220][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:01.221][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:01.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.222][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:01.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:01.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.227][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:01.228][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:01.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.230][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.231][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:01.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:01.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.234][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:01.235][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:01.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.237][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.238][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:01.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:01.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.242][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.243][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.244][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.249][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:01.250][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:01.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.252][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.253][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:01.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:01.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.257][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:01.257][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:01.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.259][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.260][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:01.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:01.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.264][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:01.265][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:01.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.266][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.267][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:01.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:01.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:01.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:01.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:01.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:01.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:01.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:01.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:01.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:01.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:01.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:01.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:01.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:01.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:01.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:01.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:01.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:01.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:01.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:01.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:01.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:01.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:01.312][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2025-01-04 16:02:01.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:01.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:01.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:01.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:01.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:01.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:01.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:01.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:01.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:01.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:01.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:01.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:01.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:01.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:01.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:01.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:01.354][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2025-01-04 16:02:01.355][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:01.356][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2025-01-04 16:02:01.358][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:02:01.359][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml".
biodb.DEBUG[2025-01-04 16:02:01.360][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:01.361][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:01.362][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:01.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:01.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:01.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:01.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:01.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:01.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:01.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:01.373][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:01.374][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:01.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.376][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:01.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:01.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.381][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:01.382][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:01.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.383][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.385][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:01.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:01.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.388][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:01.389][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:01.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.391][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.392][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:01.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:01.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.396][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:01.397][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:01.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.398][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:01.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:01.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.403][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:01.404][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:01.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.406][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:01.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:01.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.411][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:01.412][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:01.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.413][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.414][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:01.415][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:01.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.417][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.418][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:01.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:01.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.422][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.423][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.424][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.429][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:01.430][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:01.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.432][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.433][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:01.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:01.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.437][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:01.438][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:01.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.444][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.445][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:01.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:01.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.449][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:01.450][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:01.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.451][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.452][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:01.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:01.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:01.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:01.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:01.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:01.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:01.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:01.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:01.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:01.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:01.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:01.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:01.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:01.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:01.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:01.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:01.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:01.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:01.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:01.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:01.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:01.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:01.491][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2025-01-04 16:02:01.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:01.518][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:01.521][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:02:01.522][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-01-04 16:02:01.523][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:02:01.524][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-01-04 16:02:01.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:01.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:01.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:01.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:01.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:01.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:01.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:01.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:01.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:01.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:01.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:01.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:01.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:01.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:01.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:01.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:01.573][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:01.574][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:01.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:01.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:01.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:01.580][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:01.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:01.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.585][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:01.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:01.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:01.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:01.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:01.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:01.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:01.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:01.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:01.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:01.636][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:01.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:01.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:01.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:01.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:01.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:01.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:01.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:01.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:01.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:01.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:01.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:01.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:01.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:01.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:01.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:01.675][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:01.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:01.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:01.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:01.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:01.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:01.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:01.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:01.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:01.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:01.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:01.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:01.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:01.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:01.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:01.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:01.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:01.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:01.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:01.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:01.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:01.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:01.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:01.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:01.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:01.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:01.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:01.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:01.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:01.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:01.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:01.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:01.753][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:01.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:01.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:01.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:01.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:01.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:01.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:01.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:01.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:01.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:01.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:01.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:01.784][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:01.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:01.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:01.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:01.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:01.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:01.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:01.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:01.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:01.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:01.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:01.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:01.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:01.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:01.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:01.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:01.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:01.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:01.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:01.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:01.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:01.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:01.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:01.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:01.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:01.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:01.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:01.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:01.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:01.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:01.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:01.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:01.862][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:01.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:01.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:01.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:01.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:01.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:01.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:01.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:01.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:01.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:01.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:01.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:01.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:01.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:01.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:01.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:01.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:01.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:01.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:01.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:01.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:01.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:01.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:01.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:01.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:01.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:01.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:01.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:01.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:01.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:01.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:01.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:01.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:01.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:01.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:01.972][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:01.975][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:02:01.976][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2025-01-04 16:02:01.977][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:02:01.979][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2025-01-04 16:02:01.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:01.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:01.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:01.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:01.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:01.988][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:01.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:01.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:01.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:01.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:01.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:02.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:02.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:02.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:02.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:02.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:02.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:02.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:02.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:02.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:02.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:02.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:02.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:02.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:02.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:02.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:02.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:02.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:02.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:02.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:02.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:02.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:02.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:02.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:02.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:02.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:02.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:02.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:02.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:02.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:02.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:02.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:02.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:02.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:02.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:02.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:02.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:02.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:02.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:02.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:02.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:02.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:02.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:02.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:02.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:02.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:02.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:02.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:02.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:02.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:02.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:02.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:02.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:02.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:02.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:02.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:02.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:02.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:02.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:02.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:02.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:02.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:02.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:02.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:02.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:02.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:02.184][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:02.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:02.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:02.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:02.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:02.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:02.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:02.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:02.204][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:02.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:02.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:02.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:02.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:02.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:02.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:02.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:02.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:02.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:02.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:02.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:02.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:02.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:02.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:02.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:02.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:02.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:02.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:02.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:02.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:02.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:02.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:02.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:02.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:02.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:02.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:02.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:02.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:02.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:02.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:02.285][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:02.286][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:02.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:02.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:02.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:02.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:02.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:02.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:02.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:02.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:02.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:02.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:02.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:02.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:02.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:02.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:02.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:02.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:02.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:02.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:02.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:02.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:02.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:02.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:02.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:02.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:02.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:02.348][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:02.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:02.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:02.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:02.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:02.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:02.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:02.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:02.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:02.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:02.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:02.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:02.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:02.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:02.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:02.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:02.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:02.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:02.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:02.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:02.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.394][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:02.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.412][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-01-04 16:02:02.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-01-04 16:02:02.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-01-04 16:02:02.426][biodb::testThat]
biodb.INFO [2025-01-04 16:02:02.427][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-01-04 16:02:02.428][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-04 16:02:02.429][biodb::testThat]
biodb.TRACE[2025-01-04 16:02:02.431][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-04 16:02:02.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-04 16:02:02.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.435][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-04 16:02:02.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-04 16:02:02.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.439][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-04 16:02:02.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-04 16:02:02.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.453][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:02.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:02.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:02.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:02.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:02.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:02.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:02.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:02.498][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:02.501][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:02:02.502][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-01-04 16:02:02.503][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:02:02.504][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-01-04 16:02:02.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:02.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:02.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:02.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:02.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:02.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:02.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:02.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:02.526][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:02.529][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:02:02.530][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-01-04 16:02:02.531][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:02:02.532][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-01-04 16:02:02.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:02.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:02.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:02.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:02.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:02.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:02.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:02.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:02.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:02.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:02.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:02.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:02.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:02.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:02.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:02.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.570][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:02.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:02.573][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:02:02.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:02.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:02.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:02.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:02.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:02.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:02.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:02.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.596][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:02.597][private$selectFields]
biodb.TRACE[2025-01-04 16:02:02.598][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:02.598][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:02.599][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:02.600][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.601][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.603][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.604][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.605][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.606][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.607][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:02.608][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:02.609][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.610][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.612][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.613][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:02.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.633][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-01-04 16:02:02.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:02.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:02.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:02.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:02.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:02.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:02.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:02.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.650][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:02.651][private$selectFields]
biodb.TRACE[2025-01-04 16:02:02.651][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:02.652][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:02.653][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:02.654][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.655][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.657][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.658][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.658][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.660][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.661][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:02.662][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:02.663][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.664][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.665][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.666][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:02.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.678][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-01-04 16:02:02.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:02.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:02.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:02.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:02.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:02.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:02.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:02.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.695][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:02.696][private$selectFields]
biodb.TRACE[2025-01-04 16:02:02.697][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:02.698][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:02.699][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:02.700][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.701][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.702][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.703][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.704][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.706][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.707][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:02.708][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:02.709][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.710][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.711][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.712][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:02.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:02.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:02.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:02.724][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-01-04 16:02:02.725][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:02:02.726][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:02:02.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:02.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:02.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:02.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:02.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:02.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:02.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:02.739][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:02.742][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:02.743][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:02.745][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-01-04 16:02:03.101][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-01-04 16:02:03.459][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:03.469][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content"
biodb.TRACE[2025-01-04 16:02:03.479][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.request"
biodb.DEBUG[2025-01-04 16:02:03.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:03.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:03.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:03.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:03.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:03.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:03.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:03.508][private$loadEntries] Creating entries from ids [1]: "113227".
biodb.DEBUG[2025-01-04 16:02:03.510][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:03.512][cch$loadFileContent] Trying to load 1 files from cache: [1]: "113227".
biodb.TRACE[2025-01-04 16:02:03.514][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:03.516][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:03.517][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:03.518][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:03.520][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:03.521][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:03.524][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:03.525][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:03.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:03.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:03.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:03.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:03.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:03.535][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.DEBUG[2025-01-04 16:02:03.538][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:03.539][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:03.540][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
biodb.TRACE[2025-01-04 16:02:03.911][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227).
biodb.DEBUG[2025-01-04 16:02:04.261][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:04.266][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.content"
biodb.TRACE[2025-01-04 16:02:04.273][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ed496dac459a2ba62e671edbcae22326.request"
biodb.TRACE[2025-01-04 16:02:04.279][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/113227.xml"
biodb.DEBUG[2025-01-04 16:02:04.282][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:04.285][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:04.287][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:04.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:04.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:04.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:04.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:04.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:04.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:04.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:04.315][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:04.316][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:04.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.319][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:04.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:04.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:04.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:04.327][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:04.329][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:04.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.331][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:04.333][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:04.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:04.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:04.338][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:04.339][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:04.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.341][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:04.343][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:04.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:04.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:04.347][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:04.348][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:04.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.350][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:04.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:04.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:04.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:04.356][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:04.357][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:04.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.359][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:04.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:04.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:04.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:04.364][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:04.365][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:04.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.367][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:04.368][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:04.369][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:04.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.371][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:04.372][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:04.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:04.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:04.376][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:04.377][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:04.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.379][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:04.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:04.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:04.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:04.384][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:04.386][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:04.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.387][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:04.389][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:04.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:04.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:04.393][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:04.394][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:04.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.396][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:04.397][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:04.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:04.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:04.401][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:04.402][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:04.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.404][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:04.405][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:04.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:04.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:04.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:04.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:04.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:04.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:04.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:04.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:04.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:04.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:04.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:04.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:04.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:04.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:04.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:04.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:04.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:04.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:04.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:04.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:04.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:04.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:04.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:04.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:04.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:04.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:04.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:04.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:04.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:04.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:04.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:04.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:04.463][self$createEntryFromContent] Accession numbers: 113227.
biodb.TRACE[2025-01-04 16:02:04.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:04.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:04.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:04.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:04.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:04.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:04.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:04.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:04.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:04.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:04.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:04.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:04.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:04.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:04.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:04.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:04.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:04.484][private$loadEntries] Creating entries from ids [1]: "169712".
biodb.DEBUG[2025-01-04 16:02:04.485][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:04.486][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169712".
biodb.TRACE[2025-01-04 16:02:04.487][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:04.488][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:04.489][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:04.490][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:04.491][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:04.492][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:04.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:04.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:04.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:04.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:04.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:04.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:04.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:04.504][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.DEBUG[2025-01-04 16:02:04.506][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:04.507][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:04.508][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
biodb.TRACE[2025-01-04 16:02:04.883][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712).
biodb.DEBUG[2025-01-04 16:02:05.227][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:05.232][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.content"
biodb.TRACE[2025-01-04 16:02:05.239][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6e52d7b9d801aec68d97cc03bd4acc90.request"
biodb.TRACE[2025-01-04 16:02:05.244][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169712.xml"
biodb.DEBUG[2025-01-04 16:02:05.247][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:05.250][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:05.252][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:05.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:05.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:05.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:05.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:05.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:05.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:05.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:05.277][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:05.279][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:05.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.282][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:05.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:05.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:05.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:05.290][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:05.291][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:05.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.294][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:05.295][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:05.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:05.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:05.300][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:05.301][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:05.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.303][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:05.305][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:05.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:05.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:05.309][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:05.310][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:05.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.312][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:05.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:05.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:05.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:05.317][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:05.318][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:05.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.320][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:05.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:05.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:05.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:05.325][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:05.326][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:05.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.327][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:05.328][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:05.329][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:05.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.331][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:05.332][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:05.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:05.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:05.336][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:05.337][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:05.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.338][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:05.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:05.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:05.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:05.343][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:05.344][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:05.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.346][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:05.347][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:05.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:05.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:05.351][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:05.351][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:05.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.353][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:05.354][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:05.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:05.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:05.365][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:05.366][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:05.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.368][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:05.370][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:05.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:05.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:05.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:05.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:05.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:05.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:05.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:05.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:05.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:05.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:05.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:05.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:05.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:05.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:05.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:05.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:05.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:05.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:05.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:05.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:05.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:05.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:05.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:05.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:05.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:05.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:05.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:05.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:05.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:05.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:05.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:05.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:05.409][self$createEntryFromContent] Accession numbers: 169712.
biodb.TRACE[2025-01-04 16:02:05.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:05.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:05.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:05.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:05.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:05.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:05.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:05.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:05.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:05.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:05.421][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:05.424][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:05.425][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:05.427][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-01-04 16:02:05.778][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-01-04 16:02:06.134][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:06.137][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content"
biodb.TRACE[2025-01-04 16:02:06.143][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.request"
biodb.DEBUG[2025-01-04 16:02:06.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:06.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:06.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:06.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:06.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:06.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:06.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:06.163][private$loadEntries] Creating entries from ids [1]: "4781".
biodb.DEBUG[2025-01-04 16:02:06.165][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:06.167][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4781".
biodb.TRACE[2025-01-04 16:02:06.169][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:06.170][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:06.172][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:06.174][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:06.175][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:06.176][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:06.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:06.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:06.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:06.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:06.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:06.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:06.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:06.196][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.DEBUG[2025-01-04 16:02:06.201][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:06.202][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:06.205][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
biodb.TRACE[2025-01-04 16:02:06.599][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781).
biodb.DEBUG[2025-01-04 16:02:07.040][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:07.044][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.content"
biodb.TRACE[2025-01-04 16:02:07.052][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e4869054c906476bc1e4ece10c7e53cc.request"
biodb.TRACE[2025-01-04 16:02:07.057][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4781.xml"
biodb.DEBUG[2025-01-04 16:02:07.060][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:07.062][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:07.065][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:07.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:07.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:07.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:07.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:07.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:07.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:07.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:07.091][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:07.093][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:07.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.096][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:07.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:07.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:07.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:07.103][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:07.105][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:07.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.107][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:07.109][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:07.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:07.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:07.114][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:07.115][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:07.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.117][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:07.119][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:07.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:07.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:07.123][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:07.124][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:07.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.126][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:07.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:07.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:07.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:07.141][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:07.142][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:07.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.144][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:07.145][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:07.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:07.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:07.149][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:07.150][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:07.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.152][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:07.153][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:07.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:07.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:07.157][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:07.158][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:07.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.159][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:07.160][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:07.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:07.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:07.164][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:07.165][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:07.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.167][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:07.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:07.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:07.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:07.171][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:07.172][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:07.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.174][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:07.175][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:07.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:07.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:07.179][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:07.180][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:07.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.181][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:07.183][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:07.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:07.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:07.186][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:07.187][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:07.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.189][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:07.190][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:07.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:07.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:07.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:07.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:07.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:07.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:07.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:07.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:07.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:07.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:07.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:07.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:07.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:07.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:07.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:07.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:07.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:07.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:07.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:07.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:07.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:07.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:07.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:07.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:07.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:07.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:07.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:07.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:07.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:07.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:07.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:07.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:07.229][self$createEntryFromContent] Accession numbers: 4781.
biodb.TRACE[2025-01-04 16:02:07.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:07.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:07.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:07.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:07.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:07.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:07.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:07.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:07.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:07.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:07.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:07.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:07.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:07.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:07.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:07.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:07.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:07.250][private$loadEntries] Creating entries from ids [1]: "16587".
biodb.DEBUG[2025-01-04 16:02:07.251][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:07.252][cch$loadFileContent] Trying to load 1 files from cache: [1]: "16587".
biodb.TRACE[2025-01-04 16:02:07.254][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:07.255][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:07.255][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:07.256][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:07.257][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:07.258][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:07.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:07.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:07.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:07.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:07.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:07.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:07.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:07.270][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.DEBUG[2025-01-04 16:02:07.272][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:07.273][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:07.275][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
biodb.TRACE[2025-01-04 16:02:08.335][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587).
biodb.DEBUG[2025-01-04 16:02:08.705][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:08.709][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.content"
biodb.TRACE[2025-01-04 16:02:08.716][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6012905c0932919c069ecb5afc0b487b.request"
biodb.TRACE[2025-01-04 16:02:08.721][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/16587.xml"
biodb.DEBUG[2025-01-04 16:02:08.724][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:08.726][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:08.729][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:08.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:08.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:08.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:08.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:08.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:08.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:08.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:08.754][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:08.762][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:08.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.769][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:08.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:08.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:08.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:08.776][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:08.777][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:08.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.780][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:08.781][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:08.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:08.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:08.785][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:08.786][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:08.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.788][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:08.790][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:08.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:08.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:08.794][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:08.795][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:08.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.796][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:08.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:08.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:08.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:08.801][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:08.802][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:08.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.804][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:08.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:08.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:08.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:08.808][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:08.809][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:08.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.811][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:08.812][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:08.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:08.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:08.816][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:08.817][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:08.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.818][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:08.819][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:08.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:08.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:08.823][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:08.824][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:08.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.826][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:08.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:08.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:08.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:08.830][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:08.831][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:08.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.833][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:08.834][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:08.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:08.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:08.838][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:08.839][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:08.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.841][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:08.842][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:08.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:08.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:08.845][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:08.846][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:08.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.848][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:08.849][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:08.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:08.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:08.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:08.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:08.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:08.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:08.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:08.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:08.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:08.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:08.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:08.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:08.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:08.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:08.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:08.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:08.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:08.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:08.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:08.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:08.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:08.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:08.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:08.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:08.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:08.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:08.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:08.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:08.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:08.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:08.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:08.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:08.888][self$createEntryFromContent] Accession numbers: 16587.
biodb.TRACE[2025-01-04 16:02:08.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:08.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:08.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:08.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:08.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:08.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:08.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:08.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:08.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:08.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:08.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:08.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:08.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:08.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:08.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:08.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:08.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:08.909][private$loadEntries] Creating entries from ids [1]: "19804".
biodb.DEBUG[2025-01-04 16:02:08.910][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:08.911][cch$loadFileContent] Trying to load 1 files from cache: [1]: "19804".
biodb.TRACE[2025-01-04 16:02:08.913][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:08.913][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:08.914][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:08.915][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:08.916][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:08.917][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:08.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:08.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:08.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:08.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:08.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:08.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:08.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:08.929][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.DEBUG[2025-01-04 16:02:08.936][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:08.937][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:08.938][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
biodb.TRACE[2025-01-04 16:02:09.304][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804).
biodb.DEBUG[2025-01-04 16:02:09.662][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:09.666][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.content"
biodb.TRACE[2025-01-04 16:02:09.673][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef7e014212775cbaa9299e60f32b2bcd.request"
biodb.TRACE[2025-01-04 16:02:09.678][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19804.xml"
biodb.DEBUG[2025-01-04 16:02:09.681][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:09.684][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:09.687][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:09.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:09.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:09.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:09.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:09.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:09.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:09.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:09.712][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:09.714][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:09.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.717][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:09.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:09.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.724][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:09.726][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:09.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.728][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.730][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:09.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:09.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.735][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:09.736][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:09.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.738][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.740][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:09.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:09.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.744][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:09.745][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:09.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.747][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.748][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:09.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:09.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.752][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:09.753][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:09.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.755][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:09.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:09.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.759][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:09.760][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:09.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.762][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.763][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:09.764][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:09.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.766][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.767][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:09.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:09.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.770][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:09.771][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:09.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.773][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:09.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:09.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.778][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:09.779][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:09.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.781][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.782][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:09.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:09.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.785][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:09.786][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:09.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.788][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.789][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:09.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:09.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.793][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:09.794][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:09.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.795][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.797][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:09.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:09.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:09.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:09.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:09.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:09.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:09.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:09.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:09.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:09.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:09.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:09.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:09.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:09.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:09.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:09.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:09.836][self$createEntryFromContent] Accession numbers: 19804.
biodb.TRACE[2025-01-04 16:02:09.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:09.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:09.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.840][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:09.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:09.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:09.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:09.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:09.878][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:02:09.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:09.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:09.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:09.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:09.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:09.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:09.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:09.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.917][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:09.918][private$selectFields]
biodb.TRACE[2025-01-04 16:02:09.919][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:09.920][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:09.920][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:09.921][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.922][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.924][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.925][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.926][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.927][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.928][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:09.929][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:09.930][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.931][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.933][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.934][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:09.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.945][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-01-04 16:02:09.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:09.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:09.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:09.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:09.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:09.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:09.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:09.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.963][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:09.964][private$selectFields]
biodb.TRACE[2025-01-04 16:02:09.964][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:09.965][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:09.966][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:09.967][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.968][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.970][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.971][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.972][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.973][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.974][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:09.975][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:09.976][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.977][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.979][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.979][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:09.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:09.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:09.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:09.991][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-01-04 16:02:09.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:09.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:09.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:09.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:09.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:09.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:10.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:10.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:10.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:10.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:10.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:10.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:10.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:10.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:10.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:10.013][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:10.014][private$selectFields]
biodb.TRACE[2025-01-04 16:02:10.015][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:10.016][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:10.017][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:10.017][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:10.018][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:10.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:10.020][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:10.021][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:10.022][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:10.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:10.024][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:10.025][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:10.025][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:10.026][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:10.027][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:10.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:10.029][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:10.030][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:10.031][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:10.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:10.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:10.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:10.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:10.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:10.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:10.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:10.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:10.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:10.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:10.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:10.042][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-01-04 16:02:10.042][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:02:10.043][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:02:10.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:10.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:10.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:10.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:10.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:10.052][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:10.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:10.056][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:10.058][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:10.059][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:10.061][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-01-04 16:02:10.404][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-01-04 16:02:10.752][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:10.756][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content"
biodb.TRACE[2025-01-04 16:02:10.764][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.request"
biodb.DEBUG[2025-01-04 16:02:10.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:10.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:10.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:10.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:10.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:10.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:10.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:10.792][private$loadEntries] Creating entries from ids [1]: "159630".
biodb.DEBUG[2025-01-04 16:02:10.794][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:10.797][cch$loadFileContent] Trying to load 1 files from cache: [1]: "159630".
biodb.TRACE[2025-01-04 16:02:10.799][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:10.801][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:10.802][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:10.804][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:10.806][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:10.807][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:10.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:10.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:10.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:10.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:10.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:10.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:10.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:10.824][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.DEBUG[2025-01-04 16:02:10.827][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:10.828][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:10.830][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
biodb.TRACE[2025-01-04 16:02:11.232][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630).
biodb.DEBUG[2025-01-04 16:02:11.594][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:11.598][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.content"
biodb.TRACE[2025-01-04 16:02:11.605][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f9497c6792bdb2528746e6a81b02589e.request"
biodb.TRACE[2025-01-04 16:02:11.610][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/159630.xml"
biodb.DEBUG[2025-01-04 16:02:11.613][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:11.616][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:11.618][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:11.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:11.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:11.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:11.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:11.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:11.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:11.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:11.644][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:11.645][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:11.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.649][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:11.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:11.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:11.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:11.656][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:11.658][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:11.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.660][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:11.662][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:11.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:11.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:11.667][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:11.668][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:11.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.670][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:11.672][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:11.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:11.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:11.676][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:11.677][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:11.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.679][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:11.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:11.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:11.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:11.684][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:11.685][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:11.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.687][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:11.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:11.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:11.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:11.692][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:11.693][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:11.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.699][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:11.707][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:11.708][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:11.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.710][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:11.711][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:11.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:11.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:11.715][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:11.716][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:11.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.717][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:11.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:11.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:11.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:11.722][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:11.723][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:11.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.725][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:11.726][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:11.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:11.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:11.730][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:11.731][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:11.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.732][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:11.733][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:11.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:11.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:11.737][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:11.738][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:11.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.740][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:11.741][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:11.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:11.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:11.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:11.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:11.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:11.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:11.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:11.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:11.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:11.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:11.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:11.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:11.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:11.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:11.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:11.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:11.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:11.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:11.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:11.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:11.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:11.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:11.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:11.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:11.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:11.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:11.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:11.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:11.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:11.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:11.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:11.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:11.780][self$createEntryFromContent] Accession numbers: 159630.
biodb.TRACE[2025-01-04 16:02:11.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:11.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:11.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:11.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:11.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:11.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:11.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:11.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:11.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:11.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:11.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:11.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:11.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:11.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:11.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:11.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:11.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:11.801][private$loadEntries] Creating entries from ids [1]: "160202".
biodb.DEBUG[2025-01-04 16:02:11.802][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:11.803][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160202".
biodb.TRACE[2025-01-04 16:02:11.805][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:11.806][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:11.806][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:11.807][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:11.808][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:11.809][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:11.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:11.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:11.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:11.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:11.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:11.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:11.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:11.821][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.DEBUG[2025-01-04 16:02:11.823][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:11.824][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:11.825][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
biodb.TRACE[2025-01-04 16:02:12.208][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202).
biodb.DEBUG[2025-01-04 16:02:12.557][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:12.560][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.content"
biodb.TRACE[2025-01-04 16:02:12.566][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1de9586ccaafdf8e637928dc3e313d63.request"
biodb.TRACE[2025-01-04 16:02:12.569][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160202.xml"
biodb.DEBUG[2025-01-04 16:02:12.571][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:12.573][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:12.575][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:12.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:12.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:12.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:12.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:12.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:12.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:12.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:12.595][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:12.596][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:12.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.599][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:12.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:12.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:12.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:12.607][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:12.608][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:12.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.611][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:12.613][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:12.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:12.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:12.635][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:12.637][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:12.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.641][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:12.643][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:12.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:12.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:12.649][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:12.651][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:12.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.653][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:12.655][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:12.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:12.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:12.661][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:12.663][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:12.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.666][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:12.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:12.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:12.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:12.672][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:12.673][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:12.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.674][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:12.676][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:12.677][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:12.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.679][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:12.680][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:12.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:12.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:12.684][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:12.685][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:12.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.686][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:12.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:12.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:12.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:12.692][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:12.693][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:12.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.694][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:12.696][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:12.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:12.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:12.700][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:12.701][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:12.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.703][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:12.704][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:12.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:12.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:12.708][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:12.709][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:12.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.711][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:12.712][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:12.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:12.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:12.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:12.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:12.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:12.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:12.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:12.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:12.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:12.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:12.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:12.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:12.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:12.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:12.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:12.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:12.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:12.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:12.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:12.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:12.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:12.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:12.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:12.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:12.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:12.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:12.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:12.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:12.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:12.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:12.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:12.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:12.765][self$createEntryFromContent] Accession numbers: 160202.
biodb.TRACE[2025-01-04 16:02:12.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:12.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:12.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:12.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:12.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:12.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:12.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:12.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:12.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:12.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:12.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:12.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:12.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:12.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:12.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:12.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:12.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:12.793][private$loadEntries] Creating entries from ids [1]: "160393".
biodb.DEBUG[2025-01-04 16:02:12.794][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:12.796][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160393".
biodb.TRACE[2025-01-04 16:02:12.797][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:12.799][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:12.800][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:12.801][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:12.802][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:12.803][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:12.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:12.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:12.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:12.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:12.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:12.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:12.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:12.817][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.DEBUG[2025-01-04 16:02:12.820][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:12.821][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:12.823][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
biodb.TRACE[2025-01-04 16:02:13.218][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393).
biodb.DEBUG[2025-01-04 16:02:13.573][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:13.578][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.content"
biodb.TRACE[2025-01-04 16:02:13.585][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e0266c32050b31cda3d5e01c2d907fcd.request"
biodb.TRACE[2025-01-04 16:02:13.591][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160393.xml"
biodb.DEBUG[2025-01-04 16:02:13.594][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:13.598][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:13.634][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:13.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:13.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:13.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:13.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:13.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:13.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:13.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:13.653][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:13.654][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:13.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.656][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:13.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:13.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:13.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:13.662][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:13.663][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:13.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.665][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:13.666][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:13.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:13.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:13.670][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:13.671][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:13.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.673][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:13.675][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:13.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:13.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:13.679][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:13.680][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:13.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.681][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:13.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:13.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:13.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:13.687][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:13.688][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:13.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.689][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:13.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:13.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:13.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:13.694][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:13.695][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:13.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.697][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:13.698][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:13.700][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:13.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.701][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:13.702][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:13.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:13.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:13.706][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:13.707][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:13.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.709][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:13.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:13.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:13.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:13.714][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:13.715][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:13.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.717][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:13.718][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:13.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:13.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:13.722][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:13.723][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:13.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.725][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:13.726][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:13.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:13.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:13.730][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:13.731][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:13.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.733][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:13.734][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:13.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:13.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:13.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:13.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:13.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:13.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:13.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:13.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:13.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:13.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:13.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:13.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:13.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:13.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:13.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:13.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:13.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:13.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:13.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:13.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:13.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:13.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:13.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:13.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:13.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:13.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:13.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:13.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:13.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:13.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:13.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:13.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:13.774][self$createEntryFromContent] Accession numbers: 160393.
biodb.TRACE[2025-01-04 16:02:13.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:13.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:13.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:13.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:13.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:13.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:13.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:13.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:13.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:13.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:13.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:13.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:13.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:13.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:13.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:13.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:13.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:13.795][private$loadEntries] Creating entries from ids [1]: "160991".
biodb.DEBUG[2025-01-04 16:02:13.796][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:13.797][cch$loadFileContent] Trying to load 1 files from cache: [1]: "160991".
biodb.TRACE[2025-01-04 16:02:13.798][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:13.799][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:13.800][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:13.801][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:13.802][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:13.803][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:13.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:13.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:13.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:13.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:13.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:13.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:13.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:13.820][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.DEBUG[2025-01-04 16:02:13.822][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:13.823][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:13.824][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
biodb.TRACE[2025-01-04 16:02:14.205][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991).
biodb.DEBUG[2025-01-04 16:02:14.599][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:14.603][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.content"
biodb.TRACE[2025-01-04 16:02:14.610][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6bad8d3e957240d90a71edc1329f8f37.request"
biodb.TRACE[2025-01-04 16:02:14.615][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/160991.xml"
biodb.DEBUG[2025-01-04 16:02:14.618][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:14.621][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:14.623][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:14.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:14.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:14.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:14.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:14.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:14.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:14.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:14.649][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:14.651][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:14.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.654][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:14.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:14.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:14.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:14.661][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:14.663][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:14.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.665][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:14.667][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:14.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:14.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:14.672][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:14.673][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:14.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.675][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:14.677][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:14.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:14.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:14.681][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:14.682][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:14.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.684][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:14.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:14.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:14.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:14.689][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:14.690][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:14.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.692][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:14.693][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:14.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:14.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:14.697][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:14.698][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:14.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.700][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:14.701][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:14.702][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:14.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.703][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:14.704][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:14.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:14.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:14.708][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:14.709][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:14.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.711][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:14.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:14.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:14.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:14.715][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:14.716][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:14.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.718][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:14.719][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:14.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:14.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:14.723][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:14.724][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:14.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.726][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:14.727][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:14.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:14.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:14.731][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:14.731][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:14.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.733][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:14.734][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:14.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:14.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:14.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:14.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:14.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:14.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:14.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:14.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:14.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:14.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:14.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:14.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:14.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:14.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:14.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:14.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:14.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:14.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:14.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:14.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:14.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:14.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:14.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:14.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:14.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:14.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:14.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:14.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:14.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:14.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:14.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:14.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:14.774][self$createEntryFromContent] Accession numbers: 160991.
biodb.TRACE[2025-01-04 16:02:14.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:14.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:14.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:14.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:14.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:14.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:14.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:14.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:14.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:14.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:14.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:14.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:14.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:14.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:14.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:14.802][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:14.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:14.804][private$loadEntries] Creating entries from ids [1]: "164975".
biodb.DEBUG[2025-01-04 16:02:14.804][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:14.806][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164975".
biodb.TRACE[2025-01-04 16:02:14.807][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:14.808][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:14.809][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:14.810][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:14.811][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:14.812][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:14.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:14.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:14.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:14.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:14.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:14.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:14.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:14.823][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.DEBUG[2025-01-04 16:02:14.826][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:14.827][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:14.828][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
biodb.TRACE[2025-01-04 16:02:15.200][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975).
biodb.DEBUG[2025-01-04 16:02:15.551][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:15.555][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.content"
biodb.TRACE[2025-01-04 16:02:15.562][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b1cbfaf7aef2d62dc8db3306c1521943.request"
biodb.TRACE[2025-01-04 16:02:15.567][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164975.xml"
biodb.DEBUG[2025-01-04 16:02:15.570][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:15.573][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:15.575][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:15.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:15.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:15.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:15.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:15.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:15.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:15.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:15.601][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:15.603][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:15.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.606][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:15.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:15.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:15.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:15.614][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:15.615][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:15.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.617][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:15.619][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:15.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:15.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:15.624][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:15.625][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:15.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.627][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:15.629][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:15.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:15.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:15.633][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:15.634][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:15.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.636][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:15.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:15.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:15.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:15.641][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:15.642][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:15.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.644][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:15.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:15.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:15.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:15.649][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:15.650][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:15.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.651][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:15.652][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:15.653][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:15.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.655][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:15.656][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:15.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:15.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:15.660][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:15.661][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:15.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.663][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:15.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:15.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:15.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:15.668][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:15.668][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:15.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.670][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:15.672][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:15.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:15.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:15.675][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:15.676][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:15.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.678][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:15.679][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:15.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:15.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:15.683][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:15.684][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:15.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.685][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:15.686][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:15.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:15.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:15.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:15.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:15.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:15.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:15.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:15.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:15.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:15.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:15.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:15.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:15.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:15.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:15.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:15.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:15.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:15.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:15.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:15.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:15.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:15.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:15.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:15.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:15.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:15.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:15.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:15.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:15.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:15.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:15.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:15.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:15.736][self$createEntryFromContent] Accession numbers: 164975.
biodb.TRACE[2025-01-04 16:02:15.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:15.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:15.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:15.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:15.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:15.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:15.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:15.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:15.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:15.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:15.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:15.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:15.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:15.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:15.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:15.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:15.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:15.756][private$loadEntries] Creating entries from ids [1]: "164994".
biodb.DEBUG[2025-01-04 16:02:15.757][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:15.759][cch$loadFileContent] Trying to load 1 files from cache: [1]: "164994".
biodb.TRACE[2025-01-04 16:02:15.760][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:15.761][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:15.762][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:15.763][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:15.764][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:15.765][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:15.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:15.768][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:15.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:15.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:15.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:15.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:15.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:15.776][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.DEBUG[2025-01-04 16:02:15.779][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:15.779][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:15.781][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
biodb.TRACE[2025-01-04 16:02:16.149][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994).
biodb.DEBUG[2025-01-04 16:02:16.499][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:16.502][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.content"
biodb.TRACE[2025-01-04 16:02:16.508][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c2789f33696a1a62a1d6cd81e3041cd1.request"
biodb.TRACE[2025-01-04 16:02:16.511][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/164994.xml"
biodb.DEBUG[2025-01-04 16:02:16.513][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:16.515][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:16.517][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:16.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:16.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:16.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:16.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:16.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:16.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:16.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:16.537][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:16.538][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:16.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.541][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:16.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:16.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:16.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:16.549][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:16.551][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:16.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.554][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:16.556][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:16.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:16.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:16.562][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:16.564][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:16.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.566][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:16.569][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:16.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:16.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:16.575][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:16.576][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:16.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.579][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:16.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:16.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:16.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:16.587][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:16.589][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:16.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.592][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:16.594][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:16.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:16.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:16.600][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:16.601][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:16.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.605][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:16.607][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:16.608][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:16.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.610][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:16.611][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:16.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:16.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:16.615][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:16.616][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:16.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.617][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:16.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:16.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:16.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:16.623][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:16.624][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:16.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.625][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:16.627][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:16.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:16.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:16.631][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:16.632][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:16.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.799][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:16.801][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:16.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:16.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:16.804][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:16.805][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:16.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.807][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:16.808][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:16.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:16.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:16.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:16.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:16.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:16.815][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:16.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:16.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:16.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:16.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:16.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:16.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:16.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:16.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:16.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:16.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:16.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:16.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:16.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:16.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:16.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:16.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:16.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:16.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:16.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:16.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:16.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:16.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:16.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:16.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:16.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:16.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:16.847][self$createEntryFromContent] Accession numbers: 164994.
biodb.TRACE[2025-01-04 16:02:16.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:16.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:16.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:16.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:16.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:16.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:16.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:16.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:16.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:16.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:16.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:16.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:16.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:16.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:16.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:16.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:16.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:16.868][private$loadEntries] Creating entries from ids [1]: "169251".
biodb.DEBUG[2025-01-04 16:02:16.868][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:16.870][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169251".
biodb.TRACE[2025-01-04 16:02:16.871][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:16.872][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:16.873][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:16.874][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:16.875][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:16.875][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:16.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:16.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:16.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:16.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:16.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:16.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:16.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:16.887][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.DEBUG[2025-01-04 16:02:16.889][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:16.890][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:16.891][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
biodb.TRACE[2025-01-04 16:02:17.289][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251).
biodb.DEBUG[2025-01-04 16:02:17.670][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:17.674][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.content"
biodb.TRACE[2025-01-04 16:02:17.681][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/06c85ce8d5c9a410c27ad425a575abe7.request"
biodb.TRACE[2025-01-04 16:02:17.686][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169251.xml"
biodb.DEBUG[2025-01-04 16:02:17.689][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:17.692][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:17.694][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:17.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:17.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:17.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:17.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:17.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:17.714][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:17.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:17.720][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:17.722][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:17.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.725][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:17.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:17.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:17.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:17.733][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:17.734][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:17.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.737][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:17.738][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:17.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:17.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:17.743][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:17.745][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:17.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.747][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:17.748][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:17.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:17.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:17.753][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:17.754][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:17.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.756][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:17.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:17.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:17.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:17.761][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:17.762][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:17.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.764][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:17.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:17.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:17.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:17.769][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:17.769][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:17.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.771][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:17.772][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:17.773][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:17.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.775][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:17.776][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:17.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:17.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:17.787][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:17.788][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:17.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.789][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:17.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:17.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:17.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:17.794][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:17.795][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:17.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.797][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:17.798][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:17.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:17.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:17.801][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:17.802][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:17.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.804][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:17.805][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:17.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:17.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:17.809][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:17.809][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:17.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.811][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:17.812][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:17.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:17.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:17.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:17.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:17.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:17.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:17.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:17.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:17.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:17.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:17.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:17.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:17.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:17.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:17.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:17.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:17.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:17.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:17.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:17.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:17.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:17.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:17.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:17.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:17.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:17.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:17.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:17.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:17.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:17.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:17.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:17.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:17.850][self$createEntryFromContent] Accession numbers: 169251.
biodb.TRACE[2025-01-04 16:02:17.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:17.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:17.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:17.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:17.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:17.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:17.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:17.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:17.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:17.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:17.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:17.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:17.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:17.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:17.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:17.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:17.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:17.871][private$loadEntries] Creating entries from ids [1]: "224261".
biodb.DEBUG[2025-01-04 16:02:17.872][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:17.873][cch$loadFileContent] Trying to load 1 files from cache: [1]: "224261".
biodb.TRACE[2025-01-04 16:02:17.874][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:17.875][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:17.876][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:17.877][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:17.878][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:17.879][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:17.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:17.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:17.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:17.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:17.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:17.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:17.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:17.890][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261".
biodb.DEBUG[2025-01-04 16:02:17.892][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:17.893][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:17.894][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261".
biodb.TRACE[2025-01-04 16:02:18.280][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261).
biodb.DEBUG[2025-01-04 16:02:18.626][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:18.631][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7ba99c29fa5d3888a543698650c3997e.content"
biodb.TRACE[2025-01-04 16:02:18.638][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7ba99c29fa5d3888a543698650c3997e.request"
biodb.TRACE[2025-01-04 16:02:18.643][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/224261.xml"
biodb.DEBUG[2025-01-04 16:02:18.646][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:18.648][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:18.651][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:18.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:18.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:18.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:18.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:18.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:18.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:18.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:18.676][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:18.678][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:18.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.681][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:18.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:18.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:18.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:18.689][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:18.690][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:18.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.692][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:18.694][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:18.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:18.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:18.699][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:18.700][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:18.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.702][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:18.704][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:18.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:18.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:18.708][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:18.709][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:18.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.719][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:18.720][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:18.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:18.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:18.723][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:18.724][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:18.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.726][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:18.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:18.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:18.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:18.731][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:18.732][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:18.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.733][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:18.734][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:18.735][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:18.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.737][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:18.738][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:18.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:18.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:18.742][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:18.743][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:18.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.744][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:18.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:18.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:18.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:18.749][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:18.750][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:18.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.751][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:18.753][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:18.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:18.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:18.756][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:18.757][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:18.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.759][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:18.760][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:18.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:18.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:18.763][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:18.764][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:18.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.766][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:18.767][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:18.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:18.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:18.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:18.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:18.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:18.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:18.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:18.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:18.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:18.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:18.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:18.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:18.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:18.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:18.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:18.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:18.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:18.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:18.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:18.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:18.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:18.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:18.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:18.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:18.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:18.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:18.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:18.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:18.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:18.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:18.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:18.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:18.806][self$createEntryFromContent] Accession numbers: 224261.
biodb.TRACE[2025-01-04 16:02:18.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:18.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:18.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:18.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:18.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:18.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:18.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:18.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:18.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:18.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:18.818][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:18.821][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:18.821][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:18.823][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-01-04 16:02:19.171][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-01-04 16:02:19.518][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:19.523][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content"
biodb.TRACE[2025-01-04 16:02:19.531][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.request"
biodb.DEBUG[2025-01-04 16:02:19.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:19.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:19.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:19.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:19.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:19.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:19.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:19.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:19.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:19.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:19.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:19.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:19.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:19.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:19.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:19.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:19.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:19.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:19.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:19.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:19.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:19.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:19.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:19.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:19.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:19.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:19.591][private$loadEntries] Creating entries from ids [1]: "71954".
biodb.DEBUG[2025-01-04 16:02:19.592][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:19.594][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71954".
biodb.TRACE[2025-01-04 16:02:19.596][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:19.597][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:19.598][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:19.599][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:19.600][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:19.601][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:19.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:19.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:19.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:19.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:19.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:19.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:19.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:19.621][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.DEBUG[2025-01-04 16:02:19.623][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:19.624][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:19.625][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
biodb.TRACE[2025-01-04 16:02:20.202][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954).
biodb.DEBUG[2025-01-04 16:02:20.559][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:20.564][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.content"
biodb.TRACE[2025-01-04 16:02:20.570][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58f24f0de3d9b6c69a2b349522c5c9b3.request"
biodb.TRACE[2025-01-04 16:02:20.576][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71954.xml"
biodb.DEBUG[2025-01-04 16:02:20.578][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:20.581][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:20.584][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:20.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:20.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:20.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:20.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:20.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:20.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:20.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:20.609][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:20.611][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:20.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.614][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:20.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:20.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:20.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:20.622][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:20.623][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:20.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.626][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:20.627][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:20.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:20.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:20.632][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:20.633][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:20.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.635][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:20.637][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:20.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:20.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:20.641][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:20.642][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:20.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.644][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:20.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:20.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:20.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:20.649][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:20.650][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:20.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.651][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:20.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:20.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:20.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:20.656][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:20.657][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:20.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.659][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:20.660][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:20.661][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:20.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.662][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:20.663][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:20.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:20.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:20.667][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:20.668][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:20.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.669][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:20.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:20.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:20.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:20.674][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:20.675][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:20.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.677][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:20.678][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:20.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:20.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:20.681][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:20.682][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:20.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.684][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:20.685][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:20.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:20.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:20.688][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:20.689][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:20.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.691][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:20.692][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:20.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:20.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:20.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:20.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:20.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:20.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:20.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:20.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:20.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:20.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:20.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:20.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:20.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:20.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:20.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:20.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:20.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:20.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:20.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:20.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:20.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:20.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:20.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:20.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:20.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:20.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:20.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:20.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:20.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:20.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:20.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:20.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:20.731][self$createEntryFromContent] Accession numbers: 71954.
biodb.TRACE[2025-01-04 16:02:20.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:20.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:20.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:20.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:20.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:20.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:20.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:20.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:20.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:20.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:20.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:20.744][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:20.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:20.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:20.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:20.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:20.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:20.759][private$loadEntries] Creating entries from ids [1]: "197612".
biodb.DEBUG[2025-01-04 16:02:20.760][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:20.762][cch$loadFileContent] Trying to load 1 files from cache: [1]: "197612".
biodb.TRACE[2025-01-04 16:02:20.763][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:20.764][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:20.765][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:20.766][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:20.766][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:20.767][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:20.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:20.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:20.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:20.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:20.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:20.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:20.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:20.779][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612".
biodb.DEBUG[2025-01-04 16:02:20.781][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:20.782][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:20.783][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612".
biodb.TRACE[2025-01-04 16:02:21.159][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612).
biodb.DEBUG[2025-01-04 16:02:21.518][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:21.523][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d602b140c80212c04a1a2ba98ef7dc4f.content"
biodb.TRACE[2025-01-04 16:02:21.530][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d602b140c80212c04a1a2ba98ef7dc4f.request"
biodb.TRACE[2025-01-04 16:02:21.535][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/197612.xml"
biodb.DEBUG[2025-01-04 16:02:21.538][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:21.541][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:21.543][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:21.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:21.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:21.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:21.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:21.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:21.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:21.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:21.569][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:21.571][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:21.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.574][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:21.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:21.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.582][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:21.583][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:21.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.586][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.587][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:21.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:21.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.592][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:21.594][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:21.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.596][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.597][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:21.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:21.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.602][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:21.603][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:21.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.605][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:21.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:21.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.610][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:21.611][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:21.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.613][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.614][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:21.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:21.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.618][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:21.618][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:21.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.620][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.621][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:21.622][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:21.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.624][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.625][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:21.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:21.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.629][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:21.630][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:21.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.632][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:21.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:21.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.637][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:21.637][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:21.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.639][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.641][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:21.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:21.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.644][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:21.645][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:21.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.647][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.648][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:21.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:21.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.652][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:21.653][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:21.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.655][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.656][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:21.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:21.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:21.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:21.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:21.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:21.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:21.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:21.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:21.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:21.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:21.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:21.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:21.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:21.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:21.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:21.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:21.708][self$createEntryFromContent] Accession numbers: 197612.
biodb.TRACE[2025-01-04 16:02:21.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:21.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:21.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:21.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:21.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:21.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:21.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:21.721][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:02:21.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:21.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:21.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:21.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:21.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:21.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:21.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:21.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.741][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:21.742][private$selectFields]
biodb.TRACE[2025-01-04 16:02:21.742][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:21.743][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:21.744][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:21.745][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.746][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.748][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.748][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.749][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.751][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.752][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:21.753][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:21.754][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.755][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.756][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.757][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:21.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.769][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-01-04 16:02:21.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:21.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:21.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:21.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:21.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:21.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:21.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:21.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.785][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:21.786][private$selectFields]
biodb.TRACE[2025-01-04 16:02:21.787][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:21.788][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:21.789][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:21.790][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.790][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.792][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.793][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.794][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.796][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.796][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:21.797][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:21.798][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.799][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.801][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.802][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:21.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.813][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-01-04 16:02:21.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:21.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:21.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:21.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:21.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:21.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:21.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:21.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.830][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:21.831][private$selectFields]
biodb.TRACE[2025-01-04 16:02:21.832][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:21.833][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:21.834][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:21.835][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.836][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.837][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.838][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.839][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.841][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.842][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:21.843][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:21.843][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.844][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.846][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.847][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:21.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:21.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.859][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-01-04 16:02:21.860][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:02:21.861][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-01-04 16:02:21.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:21.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:21.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:21.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:21.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:21.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:21.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:21.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:21.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:21.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:21.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:21.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:21.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:21.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:21.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:21.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:21.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:21.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:21.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:21.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:21.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:21.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:21.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:21.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:21.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:21.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:21.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:21.962][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:21.963][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:21.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:21.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:21.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:21.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:21.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:21.973][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:21.976][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:02:21.977][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-01-04 16:02:21.978][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:02:21.979][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-01-04 16:02:21.982][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:21.985][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:02:21.986][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-01-04 16:02:21.987][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:02:21.988][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-01-04 16:02:21.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:21.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:21.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:21.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:21.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:21.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:21.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:21.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:22.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:22.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:22.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:22.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:22.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:22.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:22.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:22.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:22.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:22.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:22.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:22.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:22.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:22.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:22.020][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:22.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:22.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:22.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:22.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:22.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:22.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:22.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:22.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:22.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:22.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:22.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:22.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:22.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:22.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:22.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:22.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:22.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:22.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:22.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:22.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:22.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:22.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:22.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:22.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:22.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:22.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:22.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:22.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:22.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:22.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:22.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:22.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:22.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:22.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:22.053][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:02:22.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:22.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:22.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:22.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:22.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:22.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:22.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:22.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:22.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:22.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:22.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:22.070][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:22.071][private$selectFields]
biodb.TRACE[2025-01-04 16:02:22.072][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:22.073][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:22.074][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:22.074][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.075][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:22.077][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:22.078][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.079][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:22.080][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:22.081][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:22.082][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:22.083][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.084][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:22.086][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:22.086][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:22.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:22.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:22.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:22.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:22.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:22.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:22.098][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-01-04 16:02:22.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:22.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:22.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:22.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:22.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:22.106][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:22.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:22.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:22.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:22.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:22.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:22.143][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:22.144][private$selectFields]
biodb.TRACE[2025-01-04 16:02:22.145][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:22.146][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:22.147][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:22.148][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.149][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:22.150][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:22.151][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.152][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:22.154][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:22.155][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:22.167][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:22.168][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.169][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:22.171][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:22.172][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:22.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:22.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:22.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:22.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:22.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:22.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:22.183][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-01-04 16:02:22.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:22.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:22.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:22.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:22.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:22.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:22.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:22.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:22.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:22.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:22.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:22.200][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:22.201][private$selectFields]
biodb.TRACE[2025-01-04 16:02:22.202][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:22.202][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:22.203][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:22.204][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.205][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:22.207][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:22.208][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.208][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:22.210][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:22.211][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:22.212][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:22.213][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.214][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:22.215][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:22.216][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:22.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:22.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:22.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:22.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:22.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:22.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:22.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:22.228][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-01-04 16:02:22.228][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:02:22.229][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:02:22.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:22.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:22.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:22.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:22.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:22.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:22.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:22.241][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:22.244][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:22.245][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:22.247][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-01-04 16:02:22.610][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-01-04 16:02:22.958][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:22.963][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content"
biodb.TRACE[2025-01-04 16:02:22.971][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.request"
biodb.DEBUG[2025-01-04 16:02:22.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:22.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:22.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:22.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:22.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:22.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:22.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:22.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:23.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:23.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:23.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:23.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:23.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:23.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:23.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:23.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:23.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:23.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:23.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:23.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:23.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:23.031][private$loadEntries] Creating entries from ids [1]: "91601".
biodb.DEBUG[2025-01-04 16:02:23.032][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:23.034][cch$loadFileContent] Trying to load 1 files from cache: [1]: "91601".
biodb.TRACE[2025-01-04 16:02:23.035][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:23.036][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:23.037][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:23.039][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:23.040][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:23.041][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:23.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:23.044][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:23.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:23.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:23.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:23.051][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:23.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:23.053][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.DEBUG[2025-01-04 16:02:23.055][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:23.056][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:23.057][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
biodb.TRACE[2025-01-04 16:02:23.436][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601).
biodb.DEBUG[2025-01-04 16:02:23.780][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:23.784][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.content"
biodb.TRACE[2025-01-04 16:02:23.791][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aa7bc0b3048e5fb322307698a3f56fa6.request"
biodb.TRACE[2025-01-04 16:02:23.796][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91601.xml"
biodb.DEBUG[2025-01-04 16:02:23.799][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:23.801][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:23.804][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:23.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:23.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:23.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:23.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:23.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:23.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:23.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:23.842][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:23.843][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:23.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.846][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:23.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:23.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.852][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:23.854][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:23.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.856][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.857][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:23.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:23.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.861][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:23.862][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:23.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.864][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.865][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:23.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:23.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.869][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:23.870][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:23.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.872][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.873][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:23.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:23.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.877][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:23.878][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:23.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.879][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.880][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:23.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:23.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.884][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:23.885][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:23.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.886][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.887][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:23.888][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:23.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.890][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.891][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:23.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:23.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.894][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:23.895][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:23.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.897][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:23.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:23.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.902][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:23.903][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:23.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.904][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.905][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:23.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:23.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.909][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:23.910][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:23.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.912][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.913][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:23.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:23.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.916][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:23.917][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:23.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.919][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.920][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:23.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:23.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:23.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:23.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:23.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:23.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:23.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:23.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:23.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:23.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:23.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:23.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:23.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:23.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:23.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:23.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:23.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:23.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:23.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:23.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:23.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:23.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:23.958][self$createEntryFromContent] Accession numbers: 91601.
biodb.TRACE[2025-01-04 16:02:23.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:23.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:23.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:23.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:23.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:23.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:23.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:23.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:23.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:23.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:23.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:23.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:23.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:23.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:23.977][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:23.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:23.979][private$loadEntries] Creating entries from ids [1]: "95147".
biodb.DEBUG[2025-01-04 16:02:23.980][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:23.982][cch$loadFileContent] Trying to load 1 files from cache: [1]: "95147".
biodb.TRACE[2025-01-04 16:02:23.983][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:23.984][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:23.985][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:23.986][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:23.987][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:23.987][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:23.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:23.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:23.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:23.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:24.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:24.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:24.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:24.003][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.DEBUG[2025-01-04 16:02:24.005][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:24.006][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:24.007][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
biodb.TRACE[2025-01-04 16:02:24.365][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147).
biodb.DEBUG[2025-01-04 16:02:24.716][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:24.720][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.content"
biodb.TRACE[2025-01-04 16:02:24.727][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5dbc153d74635342b8ea0e83790c39e.request"
biodb.TRACE[2025-01-04 16:02:24.732][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/95147.xml"
biodb.DEBUG[2025-01-04 16:02:24.735][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:24.737][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:24.740][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:24.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:24.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:24.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:24.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:24.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:24.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:24.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:24.765][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:24.767][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:24.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.770][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:24.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:24.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.777][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:24.779][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:24.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.781][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.783][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:24.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:24.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.788][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:24.789][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:24.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.791][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.792][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:24.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:24.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.797][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:24.798][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:24.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.800][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.801][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:24.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:24.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.805][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:24.806][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:24.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.807][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.808][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:24.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:24.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.812][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:24.813][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:24.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.815][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.816][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:24.817][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:24.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.818][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.819][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:24.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:24.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.823][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:24.824][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:24.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.825][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:24.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:24.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.830][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:24.831][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:24.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.832][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.834][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:24.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:24.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.837][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:24.838][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:24.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.840][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.841][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:24.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:24.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.844][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:24.845][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:24.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.847][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.848][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:24.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:24.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:24.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:24.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:24.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:24.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:24.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:24.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:24.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:24.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:24.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:24.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:24.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:24.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:24.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:24.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:24.887][self$createEntryFromContent] Accession numbers: 95147.
biodb.TRACE[2025-01-04 16:02:24.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:24.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:24.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:24.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:24.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:24.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:24.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:24.898][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:02:24.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:24.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:24.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:24.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:24.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:24.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:24.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:24.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.923][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:24.923][private$selectFields]
biodb.TRACE[2025-01-04 16:02:24.924][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:24.925][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:24.926][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:24.927][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.928][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.929][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.930][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.931][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.933][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.934][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:24.935][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:24.935][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.936][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.938][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.939][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:24.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.950][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-01-04 16:02:24.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:24.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:24.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:24.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:24.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:24.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:24.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:24.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.967][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:24.968][private$selectFields]
biodb.TRACE[2025-01-04 16:02:24.969][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:24.970][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:24.970][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:24.971][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.972][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.974][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.975][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.976][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.977][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.978][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:24.979][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:24.980][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.981][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.982][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.983][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:24.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:24.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:24.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:24.995][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-01-04 16:02:24.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:24.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:24.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:25.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:25.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:25.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:25.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:25.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:25.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:25.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:25.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:25.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:25.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:25.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:25.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:25.011][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:25.012][private$selectFields]
biodb.TRACE[2025-01-04 16:02:25.013][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:25.014][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:25.015][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:25.015][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:25.016][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:25.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:25.018][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:25.019][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:25.020][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:25.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:25.022][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:25.022][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:25.023][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:25.024][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:25.025][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:25.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:25.027][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:25.028][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:25.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:25.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:25.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:25.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:25.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:25.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:25.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:25.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:25.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:25.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:25.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:25.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:25.040][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-01-04 16:02:25.040][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:02:25.041][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:02:25.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:25.044][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:25.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:25.048][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:25.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:25.050][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:25.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:25.053][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:25.056][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:25.057][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:25.059][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-01-04 16:02:25.412][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-01-04 16:02:25.784][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:25.788][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content"
biodb.TRACE[2025-01-04 16:02:25.796][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.request"
biodb.DEBUG[2025-01-04 16:02:25.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:25.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:25.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:25.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:25.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:25.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:25.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:25.823][private$loadEntries] Creating entries from ids [1]: "636".
biodb.DEBUG[2025-01-04 16:02:25.825][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:25.828][cch$loadFileContent] Trying to load 1 files from cache: [1]: "636".
biodb.TRACE[2025-01-04 16:02:25.831][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:25.832][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:25.834][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:25.836][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:25.838][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:25.839][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:25.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:25.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:25.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:25.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:25.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:25.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:25.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:25.856][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.DEBUG[2025-01-04 16:02:25.859][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:25.860][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:25.861][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
biodb.TRACE[2025-01-04 16:02:26.242][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636).
biodb.DEBUG[2025-01-04 16:02:26.611][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:26.614][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.content"
biodb.TRACE[2025-01-04 16:02:26.617][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ccb008951a89970d7f0e2dfe6ae3860d.request"
biodb.TRACE[2025-01-04 16:02:26.620][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/636.xml"
biodb.DEBUG[2025-01-04 16:02:26.621][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:26.622][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:26.623][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:26.625][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:26.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:26.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:26.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:26.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:26.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:26.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:26.637][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:26.638][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:26.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.640][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:26.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:26.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:26.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:26.645][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:26.646][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:26.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.648][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:26.649][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:26.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:26.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:26.653][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:26.654][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:26.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.656][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:26.657][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:26.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:26.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:26.661][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:26.662][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:26.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.664][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:26.665][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:26.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:26.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:26.669][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:26.670][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:26.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.671][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:26.673][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:26.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:26.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:26.676][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:26.677][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:26.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.679][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:26.680][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:26.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:26.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:26.684][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:26.685][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:26.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.687][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:26.688][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:26.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:26.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:26.692][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:26.693][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:26.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.694][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:26.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:26.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:26.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:26.700][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:26.701][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:26.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.702][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:26.704][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:26.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:26.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:26.708][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:26.709][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:26.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.710][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:26.712][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:26.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:26.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:26.716][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:26.717][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:26.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.718][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:26.720][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:26.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:26.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:26.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:26.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:26.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:26.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:26.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:26.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:26.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:26.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:26.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:26.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:26.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:26.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:26.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:26.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:26.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:26.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:26.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:26.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:26.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:26.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:26.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:26.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:26.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:26.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:26.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:26.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:26.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:26.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:26.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:26.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:26.773][self$createEntryFromContent] Accession numbers: 636.
biodb.TRACE[2025-01-04 16:02:26.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:26.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:26.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:26.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:26.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:26.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:26.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:26.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:26.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:26.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:26.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:26.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:26.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:26.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:26.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:26.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:26.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:26.796][private$loadEntries] Creating entries from ids [1]: "64199".
biodb.DEBUG[2025-01-04 16:02:26.797][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:26.798][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64199".
biodb.TRACE[2025-01-04 16:02:26.800][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:26.801][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:26.802][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:26.803][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:26.804][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:26.804][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:26.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:26.808][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:26.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:26.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:26.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:26.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:26.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:26.817][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.DEBUG[2025-01-04 16:02:26.820][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:26.820][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:26.822][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
biodb.TRACE[2025-01-04 16:02:27.197][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199).
biodb.DEBUG[2025-01-04 16:02:27.556][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:27.561][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.content"
biodb.TRACE[2025-01-04 16:02:27.568][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a31cc2b07404761abdda19d4ffeaa880.request"
biodb.TRACE[2025-01-04 16:02:27.574][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64199.xml"
biodb.DEBUG[2025-01-04 16:02:27.577][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:27.579][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:27.582][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:27.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:27.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:27.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:27.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:27.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:27.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:27.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:27.608][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:27.610][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:27.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.613][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:27.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:27.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:27.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:27.621][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:27.622][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:27.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.624][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:27.626][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:27.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:27.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:27.631][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:27.632][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:27.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.634][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:27.636][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:27.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:27.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:27.640][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:27.641][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:27.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.643][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:27.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:27.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:27.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:27.649][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:27.650][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:27.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.652][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:27.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:27.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:27.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:27.657][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:27.658][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:27.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.660][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:27.661][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:27.662][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:27.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.664][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:27.665][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:27.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:27.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:27.669][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:27.670][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:27.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.672][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:27.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:27.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:27.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:27.677][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:27.678][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:27.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.680][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:27.681][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:27.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:27.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:27.685][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:27.686][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:27.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.688][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:27.689][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:27.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:27.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:27.703][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:27.704][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:27.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.706][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:27.707][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:27.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:27.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:27.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:27.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:27.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:27.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:27.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:27.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:27.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:27.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:27.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:27.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:27.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:27.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:27.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:27.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:27.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:27.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:27.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:27.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:27.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:27.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:27.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:27.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:27.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:27.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:27.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:27.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:27.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:27.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:27.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:27.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:27.749][self$createEntryFromContent] Accession numbers: 64199.
biodb.TRACE[2025-01-04 16:02:27.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:27.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:27.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:27.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:27.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:27.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:27.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:27.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:27.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:27.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:27.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:27.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:27.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:27.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:27.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:27.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:27.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:27.771][private$loadEntries] Creating entries from ids [1]: "65648".
biodb.DEBUG[2025-01-04 16:02:27.772][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:27.774][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65648".
biodb.TRACE[2025-01-04 16:02:27.775][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:27.776][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:27.777][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:27.778][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:27.779][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:27.780][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:27.783][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:27.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:27.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:27.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:27.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:27.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:27.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:27.793][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.DEBUG[2025-01-04 16:02:27.795][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:27.796][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:27.797][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
biodb.TRACE[2025-01-04 16:02:28.177][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648).
biodb.DEBUG[2025-01-04 16:02:28.554][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:28.557][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.content"
biodb.TRACE[2025-01-04 16:02:28.560][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4176d017d73a3b7cdd77f889aa9b1b1d.request"
biodb.TRACE[2025-01-04 16:02:28.562][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65648.xml"
biodb.DEBUG[2025-01-04 16:02:28.563][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:28.564][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:28.565][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:28.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:28.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:28.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:28.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:28.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:28.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:28.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:28.578][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:28.579][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:28.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.581][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:28.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:28.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.585][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:28.586][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:28.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.588][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.589][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:28.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:28.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.593][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:28.594][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:28.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.596][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.597][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:28.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:28.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.601][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:28.602][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:28.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.603][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:28.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:28.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.608][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:28.609][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:28.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.611][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:28.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:28.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.616][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:28.616][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:28.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.618][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.619][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:28.620][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.622][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.632][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:28.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.636][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:28.637][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:28.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.639][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:28.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:28.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.643][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:28.644][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:28.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.646][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.647][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:28.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:28.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.651][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:28.652][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:28.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.653][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.655][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:28.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:28.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.658][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:28.659][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:28.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.661][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.662][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:28.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:28.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:28.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:28.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:28.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:28.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:28.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:28.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:28.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:28.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:28.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:28.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:28.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:28.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:28.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:28.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:28.702][self$createEntryFromContent] Accession numbers: 65648.
biodb.TRACE[2025-01-04 16:02:28.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:28.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:28.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:28.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:28.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:28.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:28.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:28.714][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:02:28.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:28.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:28.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:28.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:28.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:28.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:28.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:28.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.732][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:28.733][private$selectFields]
biodb.TRACE[2025-01-04 16:02:28.734][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:28.735][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:28.736][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:28.737][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.738][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.739][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.740][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.741][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.743][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.743][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:28.744][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:28.745][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.746][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.748][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.749][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:28.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.761][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-01-04 16:02:28.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:28.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:28.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:28.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:28.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:28.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:28.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:28.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.778][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:28.778][private$selectFields]
biodb.TRACE[2025-01-04 16:02:28.779][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:28.780][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:28.781][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:28.782][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.783][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.784][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.785][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.786][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.788][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.789][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:28.793][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:28.794][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.795][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.797][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.798][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:28.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.809][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-01-04 16:02:28.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:28.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:28.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:28.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:28.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:28.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:28.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:28.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.826][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:28.827][private$selectFields]
biodb.TRACE[2025-01-04 16:02:28.828][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:28.829][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:28.829][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:28.830][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.831][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.833][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.834][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.835][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.836][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.837][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:28.838][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:28.839][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.840][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.841][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.842][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:28.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:28.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.854][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-01-04 16:02:28.855][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:02:28.855][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-01-04 16:02:28.863][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-01-04 16:02:28.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-01-04 16:02:28.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.866][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-01-04 16:02:28.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-01-04 16:02:28.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.870][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-01-04 16:02:28.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-01-04 16:02:28.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-01-04 16:02:28.875][biodb::testThat]
biodb.INFO [2025-01-04 16:02:28.876][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-01-04 16:02:28.877][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-04 16:02:28.878][biodb::testThat]
biodb.TRACE[2025-01-04 16:02:28.881][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-04 16:02:28.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-04 16:02:28.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.884][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-04 16:02:28.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-04 16:02:28.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.887][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-04 16:02:28.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-04 16:02:28.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:28.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:28.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:28.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:28.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:28.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:28.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:28.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:28.946][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:28.953][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:02:28.954][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-01-04 16:02:28.955][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:02:28.956][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-01-04 16:02:28.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:28.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:28.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:28.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:28.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:28.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:28.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:28.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:28.978][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:28.981][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:02:28.982][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-01-04 16:02:28.983][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:02:28.984][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-01-04 16:02:28.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:28.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:28.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:28.992][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:28.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:28.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:28.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:28.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:28.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:28.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:28.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:29.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:29.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:29.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:29.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:29.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:29.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:29.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:29.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:29.025][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:02:29.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:29.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:29.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:29.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:29.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:29.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:29.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:29.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.043][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:29.043][private$selectFields]
biodb.TRACE[2025-01-04 16:02:29.044][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:29.045][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:29.046][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:29.047][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.048][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.049][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.050][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.051][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.053][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.054][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:29.055][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:29.056][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.056][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.058][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.059][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:29.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.071][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-01-04 16:02:29.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:29.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:29.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:29.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:29.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:29.079][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:29.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:29.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.088][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:29.089][private$selectFields]
biodb.TRACE[2025-01-04 16:02:29.090][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:29.091][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:29.092][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:29.093][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.094][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.095][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.096][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.097][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.099][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.100][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:29.101][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:29.102][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.102][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.104][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.105][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:29.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.121][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-01-04 16:02:29.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:29.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:29.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:29.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:29.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:29.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:29.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:29.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.137][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:29.138][private$selectFields]
biodb.TRACE[2025-01-04 16:02:29.139][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:29.140][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:29.141][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:29.142][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.143][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.144][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.145][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.146][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.148][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.149][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:29.149][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:29.150][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.151][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.153][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.154][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:29.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.165][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-01-04 16:02:29.166][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:02:29.167][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:02:29.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:29.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:29.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:29.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:29.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:29.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:29.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:29.179][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:29.181][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:02:29.182][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-01-04 16:02:29.184][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:02:29.185][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-01-04 16:02:29.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:29.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:29.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:29.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:29.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:29.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:29.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:29.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:29.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:29.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:29.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:29.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:29.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:29.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:29.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:29.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:29.225][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:29.228][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:02:29.229][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-01-04 16:02:29.230][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:02:29.231][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-01-04 16:02:29.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:29.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:29.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:29.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:29.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:29.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:29.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:29.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:29.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:29.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:29.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:29.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:29.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:29.260][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:29.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:29.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:29.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:29.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:29.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:29.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:29.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:29.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:29.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:29.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:29.295][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:02:29.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:29.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:29.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:29.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:29.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:29.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:29.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:29.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.312][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:29.313][private$selectFields]
biodb.TRACE[2025-01-04 16:02:29.314][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:29.315][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:29.316][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:29.317][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.318][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.319][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.320][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.321][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.323][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.323][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:29.324][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:29.325][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.326][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.328][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.329][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:29.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.340][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-01-04 16:02:29.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:29.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:29.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:29.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:29.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:29.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:29.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:29.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.357][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:29.358][private$selectFields]
biodb.TRACE[2025-01-04 16:02:29.359][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:29.359][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:29.360][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:29.361][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.362][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.364][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.364][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.365][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.367][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.368][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:29.369][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:29.370][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.371][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.372][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.373][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:29.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.385][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-01-04 16:02:29.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:29.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:29.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:29.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:29.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:29.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:29.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:29.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.402][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:29.403][private$selectFields]
biodb.TRACE[2025-01-04 16:02:29.404][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:29.405][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:29.405][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:29.406][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.407][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.409][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.410][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.411][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.413][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.413][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:29.414][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:29.415][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.416][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.418][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.419][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:29.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:29.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.434][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-01-04 16:02:29.435][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:02:29.436][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:02:29.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:29.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:29.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:29.443][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:29.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:29.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:29.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:29.448][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:29.450][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:02:29.452][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-01-04 16:02:29.453][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:02:29.454][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-01-04 16:02:29.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:29.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:29.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:29.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:29.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:29.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:29.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:29.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.472][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:29.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:29.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:29.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:29.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:29.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:29.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:29.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:29.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:29.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:29.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:29.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:29.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:29.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:29.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:29.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:29.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:29.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:29.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:29.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:29.514][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:29.517][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:29.518][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:29.520][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-01-04 16:02:29.886][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-01-04 16:02:30.406][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:30.411][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.content"
biodb.TRACE[2025-01-04 16:02:30.419][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dd9d19fb78fcc7453eff2e9dd7ba5702.request"
biodb.DEBUG[2025-01-04 16:02:30.431][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:30.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:30.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:30.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:30.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:30.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:30.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:30.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:30.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:30.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:30.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:30.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:30.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:30.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:30.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:30.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:30.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:30.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:30.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:30.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:30.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:30.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:30.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:30.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:30.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:30.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:30.484][private$loadEntries] Creating entries from ids [1]: "3017".
biodb.DEBUG[2025-01-04 16:02:30.485][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:30.487][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3017".
biodb.TRACE[2025-01-04 16:02:30.488][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:30.489][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:30.491][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:30.492][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:30.493][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:30.494][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:30.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:30.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:30.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:30.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:30.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:30.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:30.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:30.507][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.DEBUG[2025-01-04 16:02:30.510][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:30.520][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:30.527][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
biodb.TRACE[2025-01-04 16:02:31.212][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017).
biodb.DEBUG[2025-01-04 16:02:31.586][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:31.590][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.content"
biodb.TRACE[2025-01-04 16:02:31.597][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a0d2dadbafdef2154bb32b0db7e287ac.request"
biodb.TRACE[2025-01-04 16:02:31.602][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3017.xml"
biodb.DEBUG[2025-01-04 16:02:31.605][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:31.608][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:31.610][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:31.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:31.616][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:31.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:31.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:31.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:31.630][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:31.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:31.636][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:31.637][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:31.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.640][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:31.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:31.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:31.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:31.648][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:31.649][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:31.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.651][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:31.653][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:31.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:31.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:31.658][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:31.659][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:31.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.661][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:31.662][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:31.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:31.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:31.666][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:31.667][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:31.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.669][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:31.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:31.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:31.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:31.674][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:31.675][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:31.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.677][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:31.678][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:31.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:31.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:31.681][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:31.682][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:31.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.684][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:31.685][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:31.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:31.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:31.689][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:31.690][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:31.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.691][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:31.692][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:31.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:31.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:31.696][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:31.697][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:31.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.698][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:31.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:31.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:31.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:31.703][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:31.704][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:31.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.706][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:31.707][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:31.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:31.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:31.710][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:31.711][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:31.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.713][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:31.714][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:31.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:31.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:31.718][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:31.718][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:31.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.720][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:31.721][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:31.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:31.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:31.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:31.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:31.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:31.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:31.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:31.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:31.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:31.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:31.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:31.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:31.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:31.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:31.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:31.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:31.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:31.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:31.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:31.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:31.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:31.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:31.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:31.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:31.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:31.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:31.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:31.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:31.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:31.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:31.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:31.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:31.760][self$createEntryFromContent] Accession numbers: 3017.
biodb.TRACE[2025-01-04 16:02:31.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:31.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:31.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:31.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:31.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:31.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:31.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:31.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:31.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:31.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:31.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:31.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:31.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:31.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:31.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:31.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:31.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:31.790][private$loadEntries] Creating entries from ids [1]: "3510".
biodb.DEBUG[2025-01-04 16:02:31.791][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:31.793][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3510".
biodb.TRACE[2025-01-04 16:02:31.794][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:31.795][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:31.796][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:31.797][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:31.798][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:31.798][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:31.801][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:31.802][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:31.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:31.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:31.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:31.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:31.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:31.810][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.DEBUG[2025-01-04 16:02:31.812][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:31.813][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:31.814][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
biodb.TRACE[2025-01-04 16:02:32.405][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510).
biodb.DEBUG[2025-01-04 16:02:32.768][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:32.772][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.content"
biodb.TRACE[2025-01-04 16:02:32.779][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/58362fa70b44eecb6a87afbf9b6dfd8b.request"
biodb.TRACE[2025-01-04 16:02:32.784][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3510.xml"
biodb.DEBUG[2025-01-04 16:02:32.787][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:32.790][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:32.792][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:32.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:32.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:32.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:32.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:32.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:32.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:32.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:32.817][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:32.819][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:32.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.822][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:32.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:32.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:32.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:32.830][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:32.831][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:32.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.834][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:32.835][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:32.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:32.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:32.840][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:32.841][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:32.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.843][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:32.845][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:32.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:32.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:32.849][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:32.850][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:32.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.852][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:32.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:32.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:32.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:32.857][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:32.858][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:32.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.860][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:32.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:32.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:32.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:32.864][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:32.865][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:32.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.867][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:32.868][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:32.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:32.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:32.871][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:32.872][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:32.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.874][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:32.875][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:32.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:32.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:32.879][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:32.880][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:32.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.881][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:32.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:32.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:32.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:32.886][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:32.887][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:32.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.888][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:32.890][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:32.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:32.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:32.893][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:32.894][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:32.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.896][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:32.897][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:32.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:32.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:32.901][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:32.902][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:32.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.903][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:32.904][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:32.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:32.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:32.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:32.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:32.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:32.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:32.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:32.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:32.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:32.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:32.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:32.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:32.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:32.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:32.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:32.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:32.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:32.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:32.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:32.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:32.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:32.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:32.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:32.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:32.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:32.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:32.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:32.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:32.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:32.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:32.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:32.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:32.952][self$createEntryFromContent] Accession numbers: 3510.
biodb.TRACE[2025-01-04 16:02:32.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:32.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:32.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:32.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:32.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:32.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:32.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:32.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:32.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:32.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:32.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:32.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:32.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:32.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:32.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:32.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:32.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:32.972][private$loadEntries] Creating entries from ids [1]: "7554".
biodb.DEBUG[2025-01-04 16:02:32.973][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:32.975][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7554".
biodb.TRACE[2025-01-04 16:02:32.976][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:32.977][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:32.978][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:32.979][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:32.979][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:32.980][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:32.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:32.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:32.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:32.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:32.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:32.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:32.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:32.992][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.DEBUG[2025-01-04 16:02:32.994][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:32.995][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:32.996][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
biodb.TRACE[2025-01-04 16:02:33.447][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554).
biodb.DEBUG[2025-01-04 16:02:33.807][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:33.811][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.content"
biodb.TRACE[2025-01-04 16:02:33.818][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66bd6c2472b2485e58ad424b4505cbea.request"
biodb.TRACE[2025-01-04 16:02:33.823][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7554.xml"
biodb.DEBUG[2025-01-04 16:02:33.826][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:33.829][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:33.831][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:33.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:33.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:33.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:33.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:33.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:33.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:33.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:33.857][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:33.858][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:33.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.861][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:33.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:33.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:33.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:33.869][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:33.870][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:33.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.873][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:33.874][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:33.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:33.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:33.879][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:33.881][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:33.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.883][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:33.884][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:33.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:33.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:33.888][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:33.889][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:33.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.891][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:33.892][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:33.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:33.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:33.896][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:33.897][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:33.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.899][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:33.900][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:33.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:33.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:33.904][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:33.904][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:33.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.906][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:33.907][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:33.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:33.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:33.911][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:33.912][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:33.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.914][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:33.915][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:33.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:33.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:33.918][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:33.919][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:33.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.921][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:33.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:33.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:33.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:33.926][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:33.927][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:33.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.928][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:33.930][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:33.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:33.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:33.933][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:33.934][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:33.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.936][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:33.937][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:33.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:33.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:33.941][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:33.942][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:33.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.943][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:33.944][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:33.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:33.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:33.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:33.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:33.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:33.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:33.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:33.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:33.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:33.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:33.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:33.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:33.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:33.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:33.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:33.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:33.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:33.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:33.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:33.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:33.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:33.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:33.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:33.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:33.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:33.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:33.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:33.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:33.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:33.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:33.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:33.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:33.992][self$createEntryFromContent] Accession numbers: 7554.
biodb.TRACE[2025-01-04 16:02:33.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:33.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:33.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:33.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:33.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:33.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:33.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:34.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:34.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:34.003][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:02:34.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:34.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:34.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:34.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:34.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:34.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:34.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:34.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.021][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:34.022][private$selectFields]
biodb.TRACE[2025-01-04 16:02:34.022][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:34.023][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:34.024][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:34.025][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.026][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.027][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.028][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.029][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.031][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.032][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:34.033][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:34.033][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.034][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.036][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.037][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:34.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.048][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-01-04 16:02:34.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:34.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:34.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:34.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:34.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:34.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:34.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:34.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.065][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:34.066][private$selectFields]
biodb.TRACE[2025-01-04 16:02:34.067][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:34.068][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:34.069][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:34.069][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.070][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.072][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.073][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.074][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.076][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.076][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:34.077][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:34.078][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.079][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.081][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.082][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:34.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.094][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2025-01-04 16:02:34.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:34.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:34.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:34.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:34.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:34.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:34.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:34.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.111][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:34.115][private$selectFields]
biodb.TRACE[2025-01-04 16:02:34.116][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:34.117][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:34.118][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:34.119][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.120][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.122][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.123][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.124][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.125][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.126][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:34.127][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:34.128][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.129][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.130][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.131][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:34.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.143][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7554].
biodb.DEBUG[2025-01-04 16:02:34.144][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:02:34.145][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-01-04 16:02:34.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.155][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.176][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:34.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:34.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:34.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:34.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:34.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:34.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:34.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:34.206][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:34.209][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:02:34.210][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-01-04 16:02:34.211][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:02:34.212][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-01-04 16:02:34.215][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:34.217][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:02:34.219][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-01-04 16:02:34.220][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:02:34.221][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-01-04 16:02:34.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:34.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:34.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:34.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:34.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:34.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:34.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:34.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:34.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:34.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:34.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:34.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:34.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:34.250][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:34.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:34.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.259][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:34.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:34.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:34.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:34.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:34.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:34.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:34.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:34.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:34.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:34.287][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:02:34.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:34.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:34.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:34.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:34.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:34.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:34.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:34.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.304][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:34.305][private$selectFields]
biodb.TRACE[2025-01-04 16:02:34.306][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:34.307][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:34.307][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:34.308][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.309][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.311][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.312][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.313][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.314][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.315][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:34.316][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:34.317][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.318][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.319][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.320][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:34.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.332][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-01-04 16:02:34.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:34.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:34.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:34.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:34.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:34.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:34.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:34.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.349][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:34.350][private$selectFields]
biodb.TRACE[2025-01-04 16:02:34.350][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:34.351][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:34.352][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:34.353][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.354][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.356][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.356][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.357][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.359][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.360][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:34.361][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:34.362][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.363][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.364][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.365][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:34.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.377][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-01-04 16:02:34.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:34.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:34.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:34.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:34.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:34.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:34.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:34.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.394][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:34.395][private$selectFields]
biodb.TRACE[2025-01-04 16:02:34.396][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:34.396][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:34.397][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:34.398][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.399][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.401][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.402][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.403][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.404][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.405][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:34.406][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:34.407][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.408][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.410][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.411][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:34.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:34.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:34.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:34.422][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-01-04 16:02:34.423][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:02:34.424][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:02:34.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:34.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:34.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:34.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:34.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:34.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:34.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:34.441][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:34.443][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:34.444][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:34.446][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-01-04 16:02:34.792][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-01-04 16:02:35.149][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:35.153][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.content"
biodb.TRACE[2025-01-04 16:02:35.161][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f88afce5e7bcb0842d474b04c0bef37a.request"
biodb.DEBUG[2025-01-04 16:02:35.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:35.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:35.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:35.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:35.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:35.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:35.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:35.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:35.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:35.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:35.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:35.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:35.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:35.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:35.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:35.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:35.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:35.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:35.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:35.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:35.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:35.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:35.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:35.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:35.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:35.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:35.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:35.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:35.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:35.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:35.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:35.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:35.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:35.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:35.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:35.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:35.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:35.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:35.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:35.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:35.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:35.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:35.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:35.242][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:35.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:35.244][private$loadEntries] Creating entries from ids [1]: "27495".
biodb.DEBUG[2025-01-04 16:02:35.245][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:35.246][cch$loadFileContent] Trying to load 1 files from cache: [1]: "27495".
biodb.TRACE[2025-01-04 16:02:35.247][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:35.248][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:35.249][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:35.250][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:35.251][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:35.252][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:35.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:35.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:35.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:35.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:35.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:35.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:35.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:35.263][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.DEBUG[2025-01-04 16:02:35.265][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:35.266][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:35.268][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
biodb.TRACE[2025-01-04 16:02:35.651][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495).
biodb.DEBUG[2025-01-04 16:02:36.000][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:36.004][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.content"
biodb.TRACE[2025-01-04 16:02:36.011][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/edda5d46cbbeda6cad9b4593b6925e01.request"
biodb.TRACE[2025-01-04 16:02:36.016][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/27495.xml"
biodb.DEBUG[2025-01-04 16:02:36.019][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:36.022][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:36.024][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:36.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:36.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:36.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:36.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:36.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:36.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:36.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:36.049][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:36.051][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:36.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.054][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:36.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:36.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.062][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:36.063][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:36.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.066][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.067][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:36.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:36.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.072][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:36.074][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:36.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.076][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.077][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:36.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:36.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.082][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:36.083][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:36.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.085][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.086][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:36.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:36.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.090][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:36.091][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:36.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.092][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.094][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:36.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:36.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.097][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:36.098][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:36.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.100][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.101][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:36.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:36.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.116][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:36.117][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:36.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.118][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.119][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:36.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:36.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.123][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:36.124][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:36.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.126][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:36.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:36.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.130][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:36.131][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:36.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.133][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.134][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:36.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:36.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.138][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:36.139][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:36.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.140][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.141][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:36.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:36.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.145][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:36.146][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:36.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.147][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.148][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:36.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:36.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:36.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:36.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:36.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:36.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:36.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:36.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:36.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:36.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:36.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:36.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:36.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:36.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:36.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:36.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:36.187][self$createEntryFromContent] Accession numbers: 27495.
biodb.TRACE[2025-01-04 16:02:36.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:36.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:36.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:36.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:36.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.195][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:36.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:36.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:36.199][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:02:36.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:36.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:36.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:36.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:36.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:36.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:36.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:36.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.216][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:36.217][private$selectFields]
biodb.TRACE[2025-01-04 16:02:36.218][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:36.219][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:36.220][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:36.221][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.221][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.223][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.224][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.225][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.227][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.228][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:36.228][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:36.229][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.230][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.232][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.233][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:36.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.245][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-01-04 16:02:36.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:36.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:36.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:36.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:36.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:36.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:36.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:36.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.262][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:36.263][private$selectFields]
biodb.TRACE[2025-01-04 16:02:36.264][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:36.265][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:36.266][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:36.266][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.267][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.269][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.274][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.275][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.277][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.278][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:36.279][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:36.280][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.281][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.282][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.283][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:36.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.295][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-01-04 16:02:36.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:36.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:36.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:36.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:36.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:36.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:36.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:36.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.312][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:36.313][private$selectFields]
biodb.TRACE[2025-01-04 16:02:36.314][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:36.314][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:36.315][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:36.316][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.317][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.319][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.320][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.321][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.323][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.324][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:36.325][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:36.326][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.326][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.328][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.329][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:36.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:36.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.341][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [27495].
biodb.DEBUG[2025-01-04 16:02:36.342][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:02:36.342][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:02:36.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:36.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:36.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:36.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:36.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:36.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:36.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:36.355][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:36.358][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:02:36.359][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-01-04 16:02:36.360][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:02:36.361][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-01-04 16:02:36.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:36.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:36.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:36.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:36.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:36.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:36.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:36.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:36.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:36.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:36.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:36.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:36.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:36.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:36.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:36.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:36.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:36.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:36.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:36.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:36.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:36.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:36.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:36.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:36.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:36.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:36.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:36.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:36.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:36.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:36.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:36.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:36.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:36.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:36.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:36.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:36.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:36.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:36.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:36.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:36.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:36.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:36.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:36.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:36.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:36.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:36.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:36.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:36.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:36.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:36.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:36.434][private$loadEntries] Creating entries from ids [1]: "65675".
biodb.DEBUG[2025-01-04 16:02:36.435][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:36.437][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65675".
biodb.TRACE[2025-01-04 16:02:36.438][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:36.439][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:36.440][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:36.441][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:36.442][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:36.443][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:36.445][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:36.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:36.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:36.450][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:36.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:36.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:36.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:36.453][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.DEBUG[2025-01-04 16:02:36.456][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:36.457][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:36.458][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
biodb.TRACE[2025-01-04 16:02:36.853][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675).
biodb.DEBUG[2025-01-04 16:02:37.295][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:37.300][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.content"
biodb.TRACE[2025-01-04 16:02:37.307][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5e9eb5601826c5f1539c216fc81b6e57.request"
biodb.TRACE[2025-01-04 16:02:37.312][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65675.xml"
biodb.DEBUG[2025-01-04 16:02:37.315][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:37.318][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:37.320][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:37.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:37.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:37.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:37.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:37.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:37.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:37.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:37.347][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:37.349][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:37.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.352][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:37.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:37.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:37.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:37.360][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:37.361][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:37.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.363][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:37.365][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:37.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:37.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:37.370][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:37.371][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:37.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.373][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:37.375][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:37.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:37.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:37.379][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:37.380][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:37.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.382][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:37.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:37.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:37.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:37.387][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:37.388][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:37.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.390][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:37.391][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:37.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:37.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:37.395][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:37.396][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:37.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.398][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:37.399][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:37.400][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:37.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.402][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:37.403][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:37.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:37.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:37.407][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:37.408][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:37.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.409][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:37.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:37.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:37.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:37.414][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:37.415][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:37.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.417][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:37.418][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:37.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:37.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:37.422][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:37.423][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:37.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.425][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:37.426][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:37.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:37.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:37.430][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:37.431][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:37.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.432][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:37.434][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:37.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:37.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:37.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:37.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:37.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:37.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:37.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:37.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:37.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:37.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:37.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:37.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:37.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:37.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:37.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:37.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:37.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:37.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:37.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:37.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:37.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:37.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:37.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:37.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:37.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:37.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:37.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:37.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:37.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:37.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:37.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:37.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:37.487][self$createEntryFromContent] Accession numbers: 65675.
biodb.TRACE[2025-01-04 16:02:37.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:37.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:37.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:37.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:37.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:37.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:37.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:37.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:37.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:37.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:37.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:37.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:37.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:37.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:37.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:37.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:37.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:37.510][private$loadEntries] Creating entries from ids [1]: "66318".
biodb.DEBUG[2025-01-04 16:02:37.511][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:37.512][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66318".
biodb.TRACE[2025-01-04 16:02:37.514][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:37.515][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:37.516][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:37.517][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:37.518][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:37.518][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:37.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:37.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:37.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:37.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:37.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:37.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:37.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:37.531][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.DEBUG[2025-01-04 16:02:37.534][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:37.535][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:37.536][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
biodb.TRACE[2025-01-04 16:02:38.044][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318).
biodb.DEBUG[2025-01-04 16:02:38.428][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:38.430][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.content"
biodb.TRACE[2025-01-04 16:02:38.433][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f7af403e0af2ad309d5e7b7572ad9eab.request"
biodb.TRACE[2025-01-04 16:02:38.436][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66318.xml"
biodb.DEBUG[2025-01-04 16:02:38.437][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:38.438][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:38.439][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:38.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:38.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:38.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:38.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:38.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:38.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:38.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:38.451][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:38.452][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:38.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.454][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:38.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:38.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:38.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:38.458][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:38.459][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:38.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.461][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:38.462][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:38.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:38.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:38.466][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:38.467][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:38.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.468][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:38.469][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:38.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:38.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:38.473][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:38.474][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:38.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.475][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:38.477][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:38.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:38.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:38.480][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:38.481][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:38.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.483][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:38.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:38.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:38.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:38.487][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:38.488][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:38.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.490][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:38.491][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:38.492][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:38.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.494][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:38.495][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:38.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:38.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:38.498][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:38.499][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:38.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.501][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:38.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:38.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:38.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:38.506][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:38.507][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:38.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.508][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:38.510][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:38.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:38.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:38.513][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:38.514][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:38.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.516][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:38.517][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:38.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:38.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:38.521][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:38.522][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:38.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.523][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:38.524][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:38.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:38.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:38.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:38.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:38.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:38.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:38.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:38.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:38.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:38.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:38.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:38.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:38.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:38.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:38.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:38.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:38.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:38.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:38.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:38.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:38.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:38.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:38.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:38.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:38.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:38.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:38.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:38.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:38.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:38.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:38.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:38.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:38.573][self$createEntryFromContent] Accession numbers: 66318.
biodb.TRACE[2025-01-04 16:02:38.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:38.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:38.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:38.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:38.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:38.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:38.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:38.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:38.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:38.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:38.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:38.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:38.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:38.590][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:38.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:38.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:38.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:38.594][private$loadEntries] Creating entries from ids [1]: "67547".
biodb.DEBUG[2025-01-04 16:02:38.595][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:38.596][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67547".
biodb.TRACE[2025-01-04 16:02:38.597][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:38.598][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:38.599][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:38.600][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:38.601][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:38.602][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:38.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:38.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:38.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:38.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:38.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:38.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:38.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:38.613][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.DEBUG[2025-01-04 16:02:38.616][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:38.616][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:38.618][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
biodb.TRACE[2025-01-04 16:02:39.117][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547).
biodb.DEBUG[2025-01-04 16:02:39.545][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:39.549][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.content"
biodb.TRACE[2025-01-04 16:02:39.556][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5dcb6d289b29a3e5a91ef3f664ac8354.request"
biodb.TRACE[2025-01-04 16:02:39.561][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67547.xml"
biodb.DEBUG[2025-01-04 16:02:39.564][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:39.567][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:39.569][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:39.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:39.574][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:39.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:39.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:39.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:39.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:39.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:39.595][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:39.597][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:39.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.599][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:39.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:39.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:39.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:39.607][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:39.608][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:39.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.611][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:39.613][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:39.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:39.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:39.617][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:39.619][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:39.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.621][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:39.622][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:39.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:39.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:39.626][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:39.627][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:39.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.629][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:39.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:39.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:39.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:39.634][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:39.635][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:39.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.637][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:39.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:39.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:39.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:39.642][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:39.643][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:39.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.645][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:39.646][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:39.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:39.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:39.649][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:39.650][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:39.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.652][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:39.653][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:39.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:39.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:39.657][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:39.658][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:39.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.659][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:39.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:39.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:39.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:39.664][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:39.665][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:39.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.675][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:39.676][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:39.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:39.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:39.680][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:39.681][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:39.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.682][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:39.683][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:39.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:39.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:39.687][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:39.688][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:39.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.690][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:39.691][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:39.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:39.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:39.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:39.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:39.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:39.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:39.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:39.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:39.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:39.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:39.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:39.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:39.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:39.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:39.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:39.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:39.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:39.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:39.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:39.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:39.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:39.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:39.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:39.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:39.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:39.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:39.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:39.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:39.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:39.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:39.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:39.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:39.729][self$createEntryFromContent] Accession numbers: 67547.
biodb.TRACE[2025-01-04 16:02:39.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:39.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:39.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:39.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:39.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:39.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:39.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:39.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:39.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:39.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:39.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:39.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:39.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:39.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:39.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:39.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:39.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:39.750][private$loadEntries] Creating entries from ids [1]: "69550".
biodb.DEBUG[2025-01-04 16:02:39.751][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:39.752][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69550".
biodb.TRACE[2025-01-04 16:02:39.753][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:39.754][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:39.755][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:39.756][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:39.757][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:39.758][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:39.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:39.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:39.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:39.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:39.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:39.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:39.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:39.769][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.DEBUG[2025-01-04 16:02:39.772][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:39.773][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:39.774][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
biodb.TRACE[2025-01-04 16:02:40.432][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550).
biodb.DEBUG[2025-01-04 16:02:40.786][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:40.790][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.content"
biodb.TRACE[2025-01-04 16:02:40.797][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/05703421c7bf99b1d8473c1de6165168.request"
biodb.TRACE[2025-01-04 16:02:40.802][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69550.xml"
biodb.DEBUG[2025-01-04 16:02:40.805][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:40.807][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:40.810][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:40.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:40.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:40.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:40.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:40.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:40.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:40.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:40.835][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:40.837][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:40.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.840][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:40.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:40.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:40.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:40.848][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:40.849][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:40.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.852][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:40.853][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:40.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:40.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:40.858][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:40.859][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:40.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.861][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:40.863][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:40.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:40.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:40.867][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:40.868][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:40.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.870][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:40.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:40.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:40.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:40.875][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:40.876][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:40.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.885][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:40.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:40.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:40.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:40.891][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:40.891][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:40.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.893][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:40.894][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:40.895][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:40.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.897][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:40.898][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:40.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:40.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:40.901][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:40.902][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:40.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.904][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:40.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:40.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:40.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:40.909][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:40.910][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:40.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.911][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:40.912][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:40.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:40.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:40.916][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:40.917][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:40.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.919][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:40.920][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:40.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:40.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:40.923][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:40.924][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:40.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.926][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:40.927][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:40.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:40.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:40.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:40.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:40.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:40.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:40.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:40.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:40.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:40.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:40.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:40.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:40.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:40.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:40.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:40.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:40.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:40.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:40.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:40.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:40.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:40.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:40.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:40.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:40.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:40.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:40.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:40.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:40.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:40.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:40.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:40.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:40.965][self$createEntryFromContent] Accession numbers: 69550.
biodb.TRACE[2025-01-04 16:02:40.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:40.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:40.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:40.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:40.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:40.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:40.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:40.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:40.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:40.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:40.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:40.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:40.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:40.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:40.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:40.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:40.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:40.985][private$loadEntries] Creating entries from ids [1]: "71520".
biodb.DEBUG[2025-01-04 16:02:40.986][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:40.988][cch$loadFileContent] Trying to load 1 files from cache: [1]: "71520".
biodb.TRACE[2025-01-04 16:02:40.989][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:40.990][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:40.991][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:40.992][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:40.992][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:40.993][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:40.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:40.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:40.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:41.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:41.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:41.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:41.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:41.005][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.DEBUG[2025-01-04 16:02:41.007][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:41.008][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:41.009][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
biodb.TRACE[2025-01-04 16:02:41.430][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520).
biodb.DEBUG[2025-01-04 16:02:41.848][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:41.853][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.content"
biodb.TRACE[2025-01-04 16:02:41.860][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7ceab0ba86590faa4ea87df2e390610.request"
biodb.TRACE[2025-01-04 16:02:41.866][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/71520.xml"
biodb.DEBUG[2025-01-04 16:02:41.869][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:41.872][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:41.874][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:41.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:41.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:41.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:41.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:41.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:41.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:41.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:41.900][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:41.902][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:41.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:41.905][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:41.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:41.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:41.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:41.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:41.925][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:41.927][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:41.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:41.929][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:41.930][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:41.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:41.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:41.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:41.935][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:41.936][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:41.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:41.938][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:41.939][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:41.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:41.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:41.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:41.943][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:41.944][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:41.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:41.946][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:41.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:41.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:41.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:41.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:41.951][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:41.952][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:41.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:41.953][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:41.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:41.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:41.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:41.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:41.958][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:41.959][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:41.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:41.961][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:41.962][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:41.963][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:41.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:41.965][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:41.966][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:41.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:41.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:41.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:41.970][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:41.971][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:41.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:41.973][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:41.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:41.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:41.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:41.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:41.978][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:41.979][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:41.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:41.981][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:41.982][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:41.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:41.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:41.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:41.986][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:41.987][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:41.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:41.989][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:41.990][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:41.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:41.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:41.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:41.994][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:41.995][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:41.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:41.996][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:41.998][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:41.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:42.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:42.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:42.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:42.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:42.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:42.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:42.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:42.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:42.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:42.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:42.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:42.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:42.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:42.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:42.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:42.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:42.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:42.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:42.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:42.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:42.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:42.039][self$createEntryFromContent] Accession numbers: 71520.
biodb.TRACE[2025-01-04 16:02:42.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:42.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:42.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:42.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:42.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:42.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:42.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:42.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:42.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:42.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:42.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:42.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:42.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:42.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:42.062][private$loadEntries] Creating entries from ids [1]: "77600".
biodb.DEBUG[2025-01-04 16:02:42.063][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:42.064][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77600".
biodb.TRACE[2025-01-04 16:02:42.066][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:42.067][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:42.068][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:42.069][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:42.070][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:42.071][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:42.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:42.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:42.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:42.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:42.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:42.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:42.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:42.084][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.DEBUG[2025-01-04 16:02:42.086][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:42.087][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:42.089][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
biodb.TRACE[2025-01-04 16:02:42.463][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600).
biodb.DEBUG[2025-01-04 16:02:42.814][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:42.817][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.content"
biodb.TRACE[2025-01-04 16:02:42.832][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/91aa415bb91d90afd912e94b5d252faa.request"
biodb.TRACE[2025-01-04 16:02:42.835][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77600.xml"
biodb.DEBUG[2025-01-04 16:02:42.837][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:42.839][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:42.840][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:42.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:42.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:42.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:42.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:42.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:42.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:42.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:42.857][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:42.858][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:42.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.861][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:42.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:42.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.867][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:42.868][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:42.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.870][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.871][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:42.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:42.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.875][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:42.876][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:42.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.878][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.879][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:42.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:42.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.883][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:42.884][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:42.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.885][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:42.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:42.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.890][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:42.891][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:42.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.892][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:42.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:42.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.897][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:42.898][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:42.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.899][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.901][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:42.901][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:42.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.903][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.904][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:42.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:42.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.908][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:42.909][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:42.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.910][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:42.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:42.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.915][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:42.916][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:42.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.917][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.919][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:42.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:42.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.922][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:42.923][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:42.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.925][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.926][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:42.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:42.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.929][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:42.930][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:42.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.932][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.933][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:42.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:42.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:42.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:42.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:42.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:42.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:42.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:42.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:42.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:42.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:42.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:42.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:42.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:42.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:42.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:42.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:42.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:42.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:42.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:42.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:42.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:42.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:42.971][self$createEntryFromContent] Accession numbers: 77600.
biodb.TRACE[2025-01-04 16:02:42.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:42.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:42.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:42.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:42.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:42.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:42.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:42.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:42.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:42.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:42.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:42.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:42.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:42.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:42.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:42.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:42.992][private$loadEntries] Creating entries from ids [1]: "77601".
biodb.DEBUG[2025-01-04 16:02:42.993][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:42.994][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77601".
biodb.TRACE[2025-01-04 16:02:42.999][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:43.000][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:43.001][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:43.002][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:43.003][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:43.004][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:43.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:43.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:43.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:43.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:43.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:43.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:43.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:43.016][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.DEBUG[2025-01-04 16:02:43.019][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:43.019][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:43.021][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
biodb.TRACE[2025-01-04 16:02:43.456][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601).
biodb.DEBUG[2025-01-04 16:02:43.798][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:43.800][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.content"
biodb.TRACE[2025-01-04 16:02:43.804][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ff0e48db0e5117b4127b12d15d1485a8.request"
biodb.TRACE[2025-01-04 16:02:43.808][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77601.xml"
biodb.DEBUG[2025-01-04 16:02:43.809][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:43.811][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:43.812][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:43.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:43.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:43.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:43.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:43.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:43.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:43.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:43.828][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:43.829][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:43.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.832][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:43.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:43.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.838][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:43.839][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:43.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.842][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.843][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:43.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:43.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.848][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:43.849][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:43.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.851][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.852][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:43.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:43.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.856][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:43.857][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:43.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.859][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:43.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:43.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.864][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:43.865][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:43.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.867][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.868][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:43.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:43.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.871][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:43.872][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:43.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.874][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.875][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:43.876][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:43.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.877][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.879][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:43.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:43.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.882][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:43.883][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:43.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.885][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:43.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:43.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.889][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:43.890][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:43.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.892][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.893][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:43.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:43.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.896][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:43.897][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:43.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.899][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.900][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:43.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:43.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.903][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:43.904][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:43.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.906][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.907][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:43.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:43.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:43.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:43.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:43.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:43.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:43.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:43.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:43.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:43.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:43.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:43.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:43.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:43.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:43.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:43.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:43.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:43.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:43.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:43.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:43.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:43.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:43.954][self$createEntryFromContent] Accession numbers: 77601.
biodb.TRACE[2025-01-04 16:02:43.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:43.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:43.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:43.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:43.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:43.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:43.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:43.965][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:02:43.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:43.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:43.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:43.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:43.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:43.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:43.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:43.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:43.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:43.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:43.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:43.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.982][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:43.983][private$selectFields]
biodb.TRACE[2025-01-04 16:02:43.984][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:43.985][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:43.986][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:43.986][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:43.987][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:43.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.989][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.990][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:43.991][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:43.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.992][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.993][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:43.994][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:43.995][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:43.996][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:43.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:43.998][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:43.998][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:43.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.010][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-01-04 16:02:44.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:44.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:44.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:44.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:44.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:44.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:44.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:44.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.026][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.027][private$selectFields]
biodb.TRACE[2025-01-04 16:02:44.028][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:44.029][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:44.030][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.030][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.031][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.033][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.034][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.035][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.036][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.037][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.038][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.039][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.040][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.041][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.042][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:44.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.054][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77600].
biodb.DEBUG[2025-01-04 16:02:44.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:44.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:44.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:44.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:44.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:44.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:44.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:44.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.071][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.071][private$selectFields]
biodb.TRACE[2025-01-04 16:02:44.072][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:44.073][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:44.074][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.075][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.076][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.077][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.078][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.079][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.081][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.082][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.083][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.083][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.084][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.086][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.087][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:44.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.099][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77601].
biodb.DEBUG[2025-01-04 16:02:44.099][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:02:44.100][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-01-04 16:02:44.112][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-01-04 16:02:44.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-01-04 16:02:44.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.116][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-01-04 16:02:44.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-01-04 16:02:44.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.119][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-01-04 16:02:44.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-01-04 16:02:44.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-01-04 16:02:44.125][biodb::testThat]
biodb.INFO [2025-01-04 16:02:44.126][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-01-04 16:02:44.127][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-04 16:02:44.128][biodb::testThat]
biodb.TRACE[2025-01-04 16:02:44.130][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-04 16:02:44.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-04 16:02:44.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.134][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-04 16:02:44.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-04 16:02:44.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.137][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-04 16:02:44.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-04 16:02:44.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.179][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:44.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:44.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:44.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:44.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:44.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:44.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:44.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:44.196][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:44.198][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:02:44.199][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-01-04 16:02:44.201][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:02:44.202][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-01-04 16:02:44.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:44.204][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:44.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:44.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:44.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:44.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:44.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:44.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:44.223][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:44.226][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:02:44.227][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-01-04 16:02:44.228][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:02:44.229][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-01-04 16:02:44.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:44.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:44.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:44.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:44.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:44.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:44.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:44.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:44.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:44.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:44.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:44.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:44.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:44.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:44.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:44.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:44.274][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:02:44.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:44.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:44.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:44.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:44.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:44.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:44.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:44.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.291][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.292][private$selectFields]
biodb.TRACE[2025-01-04 16:02:44.293][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:44.294][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:44.295][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.295][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.296][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.298][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.299][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.300][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.301][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.302][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.303][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.304][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.305][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.307][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.307][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:44.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.319][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-01-04 16:02:44.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:44.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:44.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:44.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:44.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:44.327][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:44.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:44.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.336][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.336][private$selectFields]
biodb.TRACE[2025-01-04 16:02:44.337][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:44.338][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:44.339][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.340][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.341][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.342][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.343][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.344][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.346][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.346][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.347][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.348][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.349][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.351][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.352][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:44.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.363][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-01-04 16:02:44.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:44.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:44.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:44.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:44.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:44.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:44.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:44.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.380][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.380][private$selectFields]
biodb.TRACE[2025-01-04 16:02:44.381][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:44.382][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:44.383][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.384][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.385][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.387][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.387][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.388][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.390][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.391][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.392][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.393][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.394][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.395][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.396][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:44.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.408][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-01-04 16:02:44.409][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:02:44.409][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:02:44.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:44.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:44.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:44.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:44.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:44.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:44.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:44.426][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:44.428][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:02:44.429][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-01-04 16:02:44.430][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:02:44.432][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-01-04 16:02:44.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:44.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:44.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:44.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:44.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:44.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:44.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:44.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:44.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:44.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:44.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:44.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:44.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:44.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:44.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:44.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:44.472][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:44.475][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:02:44.476][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-01-04 16:02:44.477][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:02:44.478][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-01-04 16:02:44.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:44.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:44.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:44.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:44.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:44.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:44.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:44.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:44.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:44.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:44.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:44.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:44.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:44.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:44.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:44.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:44.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:44.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:44.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:44.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:44.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:44.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:44.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:44.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:44.537][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:02:44.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:44.539][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:44.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:44.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:44.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:44.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:44.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:44.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.554][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.555][private$selectFields]
biodb.TRACE[2025-01-04 16:02:44.556][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:44.557][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:44.558][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.558][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.559][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.561][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.562][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.563][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.564][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.565][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.566][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.567][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.568][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.579][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.580][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:44.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.591][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-01-04 16:02:44.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:44.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:44.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:44.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:44.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:44.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:44.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:44.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.608][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.609][private$selectFields]
biodb.TRACE[2025-01-04 16:02:44.610][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:44.610][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:44.611][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.612][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.613][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.615][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.616][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.616][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.618][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.619][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.620][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.621][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.622][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.623][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.624][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:44.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.636][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-01-04 16:02:44.636][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:44.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:44.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:44.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:44.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:44.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:44.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:44.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.652][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.653][private$selectFields]
biodb.TRACE[2025-01-04 16:02:44.654][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:44.654][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:44.655][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.656][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.657][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.659][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.659][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.660][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.662][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.663][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.664][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.665][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.665][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.667][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.668][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:44.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.679][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-01-04 16:02:44.680][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:02:44.681][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:02:44.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:44.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:44.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:44.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:44.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:44.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:44.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:44.693][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:44.696][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:02:44.697][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-01-04 16:02:44.698][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:02:44.700][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-01-04 16:02:44.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:44.702][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:44.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:44.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:44.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:44.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:44.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:44.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:44.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:44.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:44.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:44.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:44.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:44.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:44.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:44.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:44.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:44.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:44.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:44.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:44.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:44.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:44.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:44.754][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:44.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:44.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:44.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:44.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:44.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:44.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:44.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:44.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:44.783][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:44.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:44.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:44.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:44.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:44.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:44.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:44.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:44.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:44.802][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:44.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:44.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:44.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:44.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:44.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:44.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:44.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:44.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:44.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:44.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:44.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:44.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:44.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:44.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.836][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:44.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:44.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:44.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:44.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:44.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:44.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:44.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:44.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:44.859][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:44.862][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:02:44.863][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-01-04 16:02:44.864][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:02:44.865][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-01-04 16:02:44.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:44.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:44.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:44.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:44.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:44.874][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:44.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:44.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:44.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:44.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:44.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:44.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:44.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:44.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:44.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:44.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:44.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:44.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:44.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:44.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:44.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:44.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:44.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:44.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:44.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:44.928][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:02:44.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:44.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:44.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:44.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:44.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:44.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:44.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:44.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.945][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.946][private$selectFields]
biodb.TRACE[2025-01-04 16:02:44.946][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:44.947][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:44.948][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.949][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.950][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.952][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.952][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.953][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.955][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.956][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.957][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.957][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.958][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.960][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.961][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:44.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.972][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-01-04 16:02:44.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:44.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:44.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:44.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:44.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:44.980][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:44.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:44.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.989][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.990][private$selectFields]
biodb.TRACE[2025-01-04 16:02:44.990][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:44.991][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:44.992][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:44.993][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.994][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.995][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:44.996][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.997][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:44.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:44.999][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.000][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.001][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.002][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.002][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.004][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.005][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:45.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.017][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-01-04 16:02:45.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:45.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:45.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:45.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:45.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:45.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:45.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:45.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.034][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.034][private$selectFields]
biodb.TRACE[2025-01-04 16:02:45.035][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:45.036][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:45.037][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.038][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.039][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.040][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.045][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.046][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.048][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.049][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.050][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.051][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.052][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.053][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.054][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:45.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.066][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-01-04 16:02:45.067][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:02:45.067][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-01-04 16:02:45.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:45.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:45.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:45.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:45.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:45.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:45.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:45.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:45.137][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:45.140][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:02:45.141][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-01-04 16:02:45.142][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:02:45.143][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-01-04 16:02:45.146][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:45.148][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:02:45.150][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-01-04 16:02:45.151][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:02:45.152][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-01-04 16:02:45.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:45.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:45.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:45.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:45.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:45.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:45.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:45.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:45.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:45.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:45.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:45.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:45.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:45.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:45.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:45.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:45.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:45.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:45.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:45.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:45.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:45.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:45.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:45.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:45.217][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:02:45.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:45.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:45.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:45.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:45.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:45.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:45.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:45.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.233][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.234][private$selectFields]
biodb.TRACE[2025-01-04 16:02:45.235][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:45.236][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:45.237][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.238][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.239][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.240][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.241][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.242][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.244][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.245][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.245][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.246][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.247][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.249][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.250][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:45.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.261][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-01-04 16:02:45.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:45.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:45.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:45.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:45.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:45.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:45.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:45.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.278][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.278][private$selectFields]
biodb.TRACE[2025-01-04 16:02:45.279][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:45.280][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:45.281][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.282][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.283][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.284][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.285][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.286][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.288][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.289][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.289][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.290][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.291][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.293][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.294][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:45.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.305][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-01-04 16:02:45.306][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:45.307][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:45.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:45.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:45.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:45.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:45.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:45.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.322][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.323][private$selectFields]
biodb.TRACE[2025-01-04 16:02:45.324][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:45.325][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:45.326][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.327][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.328][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.329][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.330][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.331][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.333][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.334][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.334][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.335][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.336][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.338][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.339][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:45.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.350][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-01-04 16:02:45.351][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:02:45.352][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:02:45.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:45.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:45.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:45.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:45.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:45.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:45.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:45.368][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:45.371][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:02:45.372][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-01-04 16:02:45.373][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:02:45.375][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-01-04 16:02:45.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:45.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:45.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:45.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:45.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:45.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:45.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:45.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.389][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:45.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:45.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:45.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:45.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:45.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:45.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:45.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:45.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:45.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:45.416][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:45.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:45.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:45.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:45.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:45.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:45.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:45.434][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:02:45.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:45.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:45.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:45.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:45.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:45.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:45.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:45.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.450][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.451][private$selectFields]
biodb.TRACE[2025-01-04 16:02:45.452][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:45.453][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:45.454][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.455][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.456][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.457][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.458][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.459][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.461][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.461][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.462][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.463][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.464][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.466][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.467][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:45.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.478][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-01-04 16:02:45.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:45.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:45.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:45.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:45.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:45.486][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:45.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:45.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.495][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.496][private$selectFields]
biodb.TRACE[2025-01-04 16:02:45.497][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:45.498][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:45.498][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.499][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.500][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.502][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.503][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.504][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.505][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.506][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.507][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.508][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.509][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.515][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.516][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:45.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.528][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-01-04 16:02:45.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:45.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:45.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:45.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:45.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:45.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:45.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:45.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.544][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.545][private$selectFields]
biodb.TRACE[2025-01-04 16:02:45.546][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:45.547][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:45.548][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.549][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.549][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.551][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.552][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.553][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.555][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.555][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.556][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.557][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.558][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.560][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.561][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:45.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.572][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-01-04 16:02:45.573][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:02:45.574][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:02:45.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:45.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:45.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:45.581][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:45.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:45.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:45.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:45.585][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:45.588][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:02:45.589][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-01-04 16:02:45.590][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:02:45.592][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-01-04 16:02:45.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:45.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:45.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:45.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:45.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:45.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:45.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:45.603][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:45.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:45.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:45.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:45.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:45.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:45.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:45.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:45.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:45.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:45.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:45.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:45.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:45.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:45.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:45.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:45.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:45.652][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:02:45.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:45.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:45.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:45.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:45.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:45.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:45.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:45.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.674][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.675][private$selectFields]
biodb.TRACE[2025-01-04 16:02:45.675][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:45.676][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:45.677][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.678][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.679][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.681][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.681][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.682][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.684][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.685][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.686][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.687][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.688][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.689][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.690][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:45.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.702][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-01-04 16:02:45.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:45.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:45.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:45.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:45.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:45.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:45.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:45.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.718][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.719][private$selectFields]
biodb.TRACE[2025-01-04 16:02:45.720][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:45.721][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:45.722][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.723][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.723][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.725][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.726][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.727][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.729][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.729][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.730][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.731][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.732][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.734][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.735][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:45.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.746][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-01-04 16:02:45.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:45.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:45.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:45.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:45.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:45.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:45.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:45.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.763][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.764][private$selectFields]
biodb.TRACE[2025-01-04 16:02:45.764][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:45.765][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:45.766][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.767][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.768][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.770][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.778][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.779][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.781][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.782][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.783][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:45.784][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.785][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.787][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.788][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:45.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:45.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.803][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-01-04 16:02:45.804][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:02:45.806][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-01-04 16:02:45.826][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-01-04 16:02:45.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-01-04 16:02:45.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.830][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-01-04 16:02:45.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-01-04 16:02:45.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.834][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-01-04 16:02:45.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-01-04 16:02:45.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.840][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:45.841][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:45.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.858][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.859][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.860][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:45.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.862][ef$get] fields variable is a list.
biodb.INFO [2025-01-04 16:02:45.864][biodb::testThat]
biodb.INFO [2025-01-04 16:02:45.865][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-01-04 16:02:45.866][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-04 16:02:45.867][biodb::testThat]
biodb.TRACE[2025-01-04 16:02:45.870][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-04 16:02:45.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-04 16:02:45.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.874][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-04 16:02:45.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-04 16:02:45.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.877][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-04 16:02:45.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-04 16:02:45.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:45.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:45.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:45.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:45.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:45.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:45.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:45.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:45.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:45.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:45.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:45.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:45.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:45.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:45.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:45.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:45.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:45.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:45.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:45.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:45.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:45.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:45.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:45.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:45.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:45.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:45.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:45.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:45.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:45.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:45.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:45.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:45.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:45.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:45.940][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:45.944][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:45.945][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:45.946][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-01-04 16:02:46.313][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-01-04 16:02:46.883][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:46.885][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content"
biodb.TRACE[2025-01-04 16:02:46.889][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.request"
biodb.DEBUG[2025-01-04 16:02:46.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:46.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:46.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:46.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:46.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:46.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:46.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:46.903][private$loadEntries] Creating entries from ids [1]: "3014".
biodb.DEBUG[2025-01-04 16:02:46.904][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:46.905][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3014".
biodb.TRACE[2025-01-04 16:02:46.906][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:46.907][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:46.908][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:46.909][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:46.910][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:46.911][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:46.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:46.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:46.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:46.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:46.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:46.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:46.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:46.922][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.DEBUG[2025-01-04 16:02:46.925][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:46.925][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:46.927][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
biodb.TRACE[2025-01-04 16:02:47.293][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014).
biodb.DEBUG[2025-01-04 16:02:47.666][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:47.668][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.content"
biodb.TRACE[2025-01-04 16:02:47.671][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/48c0bb0df5de824dbe83babbff8d81fe.request"
biodb.TRACE[2025-01-04 16:02:47.673][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3014.xml"
biodb.DEBUG[2025-01-04 16:02:47.675][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:47.676][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:47.677][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:47.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:47.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:47.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:47.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:47.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:47.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:47.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:47.688][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:47.689][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:47.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.691][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:47.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:47.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:47.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:47.707][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:47.708][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:47.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.710][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:47.711][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:47.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:47.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:47.714][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:47.715][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:47.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.717][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:47.718][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:47.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:47.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:47.722][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:47.723][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:47.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.724][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:47.725][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:47.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:47.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:47.729][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:47.730][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:47.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.732][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:47.733][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:47.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:47.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:47.736][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:47.737][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:47.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.739][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:47.740][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:47.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:47.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:47.743][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:47.744][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:47.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.746][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:47.747][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:47.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:47.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:47.751][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:47.752][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:47.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.753][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:47.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:47.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:47.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:47.758][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:47.759][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:47.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.760][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:47.762][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:47.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:47.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:47.765][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:47.766][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:47.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.768][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:47.769][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:47.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:47.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:47.772][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:47.773][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:47.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.775][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:47.776][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:47.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:47.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:47.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:47.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:47.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:47.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:47.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:47.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:47.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:47.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:47.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:47.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:47.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:47.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:47.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:47.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:47.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:47.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:47.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:47.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:47.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:47.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:47.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:47.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:47.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:47.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:47.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:47.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:47.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:47.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:47.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:47.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:47.814][self$createEntryFromContent] Accession numbers: 3014.
biodb.TRACE[2025-01-04 16:02:47.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:47.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:47.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:47.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:47.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:47.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:47.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:47.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:47.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:47.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:47.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:47.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:47.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:47.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:47.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:47.833][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:47.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:47.835][private$loadEntries] Creating entries from ids [1]: "7567".
biodb.DEBUG[2025-01-04 16:02:47.836][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:47.837][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7567".
biodb.TRACE[2025-01-04 16:02:47.838][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:47.839][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:47.840][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:47.841][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:47.842][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:47.843][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:47.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:47.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:47.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:47.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:47.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:47.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:47.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:47.854][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.DEBUG[2025-01-04 16:02:47.861][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:47.862][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:47.863][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
biodb.TRACE[2025-01-04 16:02:48.234][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567).
biodb.DEBUG[2025-01-04 16:02:48.582][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:48.586][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.content"
biodb.TRACE[2025-01-04 16:02:48.593][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d5365299c16307afdd0b9fe7b73b123c.request"
biodb.TRACE[2025-01-04 16:02:48.598][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7567.xml"
biodb.DEBUG[2025-01-04 16:02:48.601][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:48.604][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:48.606][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:48.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:48.612][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:48.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:48.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:48.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:48.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:48.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:48.632][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:48.634][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:48.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.637][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:48.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:48.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:48.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:48.644][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:48.646][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:48.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.648][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:48.650][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:48.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:48.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:48.655][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:48.656][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:48.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.658][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:48.659][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:48.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:48.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:48.663][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:48.664][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:48.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.666][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:48.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:48.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:48.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:48.671][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:48.672][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:48.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.674][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:48.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:48.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:48.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:48.679][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:48.680][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:48.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.681][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:48.682][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:48.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:48.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:48.686][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:48.687][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:48.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.688][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:48.689][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:48.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:48.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:48.693][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:48.694][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:48.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.696][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:48.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:48.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:48.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:48.700][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:48.701][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:48.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.703][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:48.704][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:48.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:48.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:48.708][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:48.708][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:48.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.710][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:48.711][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:48.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:48.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:48.715][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:48.716][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:48.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.717][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:48.718][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:48.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:48.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:48.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:48.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:48.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:48.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:48.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:48.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:48.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:48.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:48.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:48.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:48.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:48.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:48.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:48.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:48.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:48.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:48.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:48.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:48.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:48.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:48.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:48.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:48.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:48.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:48.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:48.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:48.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:48.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:48.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:48.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:48.757][self$createEntryFromContent] Accession numbers: 7567.
biodb.TRACE[2025-01-04 16:02:48.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:48.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:48.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:48.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:48.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:48.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:48.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:48.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:48.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:48.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:48.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:48.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:48.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:48.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:48.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:48.784][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:48.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:48.786][private$loadEntries] Creating entries from ids [1]: "8021".
biodb.DEBUG[2025-01-04 16:02:48.787][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:48.788][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8021".
biodb.TRACE[2025-01-04 16:02:48.789][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:48.790][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:48.791][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:48.792][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:48.793][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:48.794][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:48.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:48.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:48.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:48.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:48.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:48.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:48.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:48.805][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.DEBUG[2025-01-04 16:02:48.807][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:48.808][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:48.810][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
biodb.TRACE[2025-01-04 16:02:49.198][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021).
biodb.DEBUG[2025-01-04 16:02:49.576][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:49.581][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.content"
biodb.TRACE[2025-01-04 16:02:49.588][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6017fc384c334739eec9b216fa851a5.request"
biodb.TRACE[2025-01-04 16:02:49.594][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8021.xml"
biodb.DEBUG[2025-01-04 16:02:49.597][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:49.599][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:49.602][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:49.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:49.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:49.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:49.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:49.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:49.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:49.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:49.629][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:49.631][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:49.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.634][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:49.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:49.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:49.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:49.641][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:49.642][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:49.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.645][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:49.646][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:49.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:49.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:49.651][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:49.652][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:49.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.654][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:49.656][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:49.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:49.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:49.660][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:49.661][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:49.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.663][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:49.664][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:49.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:49.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:49.668][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:49.669][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:49.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.670][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:49.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:49.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:49.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:49.675][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:49.676][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:49.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.677][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:49.679][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:49.679][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:49.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.681][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:49.682][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:49.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:49.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:49.686][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:49.687][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:49.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.688][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:49.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:49.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:49.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:49.693][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:49.694][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:49.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.696][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:49.697][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:49.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:49.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:49.701][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:49.702][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:49.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.703][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:49.704][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:49.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:49.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:49.708][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:49.709][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:49.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.711][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:49.712][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:49.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:49.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:49.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:49.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:49.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:49.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:49.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:49.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:49.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:49.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:49.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:49.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:49.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:49.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:49.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:49.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:49.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:49.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:49.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:49.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:49.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:49.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:49.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:49.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:49.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:49.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:49.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:49.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:49.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:49.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:49.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:49.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:49.759][self$createEntryFromContent] Accession numbers: 8021.
biodb.TRACE[2025-01-04 16:02:49.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:49.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:49.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:49.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:49.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:49.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:49.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:49.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:49.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:49.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:49.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:49.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:49.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:49.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:49.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:49.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:49.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:49.780][private$loadEntries] Creating entries from ids [1]: "30382".
biodb.DEBUG[2025-01-04 16:02:49.781][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:49.782][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30382".
biodb.TRACE[2025-01-04 16:02:49.783][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:49.784][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:49.785][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:49.786][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:49.787][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:49.788][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:49.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:49.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:49.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:49.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:49.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:49.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:49.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:49.799][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.DEBUG[2025-01-04 16:02:49.802][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:49.802][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:49.804][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
biodb.TRACE[2025-01-04 16:02:50.162][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382).
biodb.DEBUG[2025-01-04 16:02:50.514][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:50.518][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.content"
biodb.TRACE[2025-01-04 16:02:50.525][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/762ae1b4688e0a5ef1a1419b25f545f9.request"
biodb.TRACE[2025-01-04 16:02:50.530][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30382.xml"
biodb.DEBUG[2025-01-04 16:02:50.533][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:50.535][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:50.538][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:50.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:50.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:50.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:50.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:50.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:50.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:50.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:50.563][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:50.565][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:50.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.568][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:50.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:50.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.576][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:50.577][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:50.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.580][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.581][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:50.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:50.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.586][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:50.587][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:50.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.590][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.591][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:50.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:50.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.595][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:50.596][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:50.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.598][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:50.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:50.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.603][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:50.604][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:50.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.606][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:50.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:50.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.611][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:50.612][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:50.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.614][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.615][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:50.616][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:50.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.617][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.618][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:50.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:50.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.622][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:50.623][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:50.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.625][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:50.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:50.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.630][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:50.630][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:50.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.632][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.633][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:50.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:50.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.637][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:50.638][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:50.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.640][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.641][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:50.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:50.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.649][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:50.653][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:50.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.655][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.656][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:50.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:50.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:50.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:50.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:50.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:50.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:50.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:50.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:50.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:50.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:50.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:50.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:50.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:50.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:50.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:50.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:50.695][self$createEntryFromContent] Accession numbers: 30382.
biodb.TRACE[2025-01-04 16:02:50.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:50.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:50.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:50.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:50.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:50.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:50.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:50.707][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:02:50.708][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:50.709][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:50.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:50.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:50.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:50.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:50.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:50.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.724][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:50.725][private$selectFields]
biodb.TRACE[2025-01-04 16:02:50.726][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:50.727][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:50.728][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:50.729][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.729][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.731][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.732][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.733][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.735][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.735][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:50.736][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:50.737][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.738][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.740][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.741][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:50.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.752][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-01-04 16:02:50.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:50.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:50.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:50.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:50.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:50.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:50.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:50.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.769][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:50.770][private$selectFields]
biodb.TRACE[2025-01-04 16:02:50.771][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:50.772][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:50.773][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:50.774][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.774][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.776][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.777][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.778][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.780][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.781][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:50.781][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:50.782][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.783][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.785][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.786][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:50.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.798][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2025-01-04 16:02:50.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:50.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:50.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:50.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:50.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:50.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:50.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:50.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.819][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:50.820][private$selectFields]
biodb.TRACE[2025-01-04 16:02:50.821][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:50.822][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:50.822][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:50.823][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.824][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.826][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.827][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.828][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.829][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.830][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:50.831][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:50.832][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.833][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.835][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.835][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:50.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:50.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:50.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:50.847][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2025-01-04 16:02:50.848][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:02:50.849][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:02:50.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:50.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:50.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:50.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:50.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:50.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:50.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:50.861][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:02:50.864][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:50.864][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:50.866][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-01-04 16:02:51.215][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-01-04 16:02:52.577][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:52.579][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content"
biodb.TRACE[2025-01-04 16:02:52.582][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.request"
biodb.DEBUG[2025-01-04 16:02:52.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:52.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:52.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:52.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:52.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:52.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:52.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:52.594][private$loadEntries] Creating entries from ids [1]: "9710".
biodb.DEBUG[2025-01-04 16:02:52.595][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:52.597][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9710".
biodb.TRACE[2025-01-04 16:02:52.598][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:52.599][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:52.600][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:52.601][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:52.601][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:52.602][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:52.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:52.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:52.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:52.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:52.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:52.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:52.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:52.613][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.DEBUG[2025-01-04 16:02:52.616][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:52.617][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:52.618][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
biodb.TRACE[2025-01-04 16:02:52.978][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710).
biodb.DEBUG[2025-01-04 16:02:53.323][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:53.327][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.content"
biodb.TRACE[2025-01-04 16:02:53.334][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b7c920ea46a15bb7175f778579142c91.request"
biodb.TRACE[2025-01-04 16:02:53.339][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9710.xml"
biodb.DEBUG[2025-01-04 16:02:53.342][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:53.345][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:53.347][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:53.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:53.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:53.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:53.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:53.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:53.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:53.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:53.373][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:53.375][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:53.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.378][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:53.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:53.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:53.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:53.385][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:53.387][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:53.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.389][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:53.391][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:53.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:53.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:53.396][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:53.397][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:53.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.399][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:53.400][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:53.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:53.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:53.405][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:53.406][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:53.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.408][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:53.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:53.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:53.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:53.424][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:53.425][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:53.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.426][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:53.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:53.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:53.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:53.431][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:53.432][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:53.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.434][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:53.435][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:53.436][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:53.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.438][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:53.439][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:53.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:53.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:53.442][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:53.443][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:53.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.445][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:53.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:53.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:53.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:53.450][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:53.450][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:53.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.452][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:53.453][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:53.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:53.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:53.457][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:53.458][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:53.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.460][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:53.461][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:53.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:53.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:53.464][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:53.465][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:53.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.467][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:53.468][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:53.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:53.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:53.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:53.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:53.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:53.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:53.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:53.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:53.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:53.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:53.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:53.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:53.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:53.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:53.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:53.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:53.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:53.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:53.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:53.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:53.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:53.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:53.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:53.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:53.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:53.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:53.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:53.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:53.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:53.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:53.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:53.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:53.507][self$createEntryFromContent] Accession numbers: 9710.
biodb.TRACE[2025-01-04 16:02:53.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:53.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:53.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:53.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:53.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:53.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:53.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:53.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:53.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:53.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:53.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:53.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:53.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:53.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:53.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:53.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:53.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:53.527][private$loadEntries] Creating entries from ids [1]: "65530".
biodb.DEBUG[2025-01-04 16:02:53.528][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:53.530][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65530".
biodb.TRACE[2025-01-04 16:02:53.536][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:53.538][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:53.539][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:53.540][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:53.542][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:53.543][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:53.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:53.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:53.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:53.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:53.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:53.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:53.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:53.560][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.DEBUG[2025-01-04 16:02:53.563][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:53.564][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:53.565][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
biodb.TRACE[2025-01-04 16:02:53.952][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530).
biodb.DEBUG[2025-01-04 16:02:54.312][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:54.315][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.content"
biodb.TRACE[2025-01-04 16:02:54.318][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bb7ff6c0bdfa280406af23f96ee06f80.request"
biodb.TRACE[2025-01-04 16:02:54.320][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65530.xml"
biodb.DEBUG[2025-01-04 16:02:54.322][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:54.323][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:54.324][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:54.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:54.327][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:54.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:54.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:54.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:54.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:54.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:54.354][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:54.356][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:54.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.359][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:54.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:54.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:54.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:54.364][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:54.365][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:54.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.367][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:54.368][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:54.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:54.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:54.372][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:54.373][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:54.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.375][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:54.376][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:54.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:54.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:54.380][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:54.381][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:54.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.382][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:54.384][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:54.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:54.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:54.387][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:54.388][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:54.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.390][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:54.391][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:54.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:54.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:54.395][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:54.396][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:54.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.398][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:54.399][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:54.400][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:54.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.402][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:54.403][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:54.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:54.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:54.407][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:54.408][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:54.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.410][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:54.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:54.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:54.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:54.415][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:54.416][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:54.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.418][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:54.419][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:54.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:54.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:54.423][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:54.424][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:54.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.425][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:54.426][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:54.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:54.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:54.430][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:54.431][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:54.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.433][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:54.434][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:54.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:54.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:54.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:54.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:54.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:54.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:54.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:54.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:54.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:54.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:54.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:54.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:54.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:54.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:54.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:54.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:54.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:54.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:54.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:54.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:54.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:54.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:54.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:54.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:54.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:54.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:54.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:54.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:54.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:54.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:54.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:54.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:54.475][self$createEntryFromContent] Accession numbers: 65530.
biodb.TRACE[2025-01-04 16:02:54.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:54.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:54.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:54.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:54.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:54.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:54.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:54.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:54.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:54.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:54.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:54.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:54.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:54.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:54.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:54.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:54.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:54.496][private$loadEntries] Creating entries from ids [1]: "72338".
biodb.DEBUG[2025-01-04 16:02:54.497][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:54.498][cch$loadFileContent] Trying to load 1 files from cache: [1]: "72338".
biodb.TRACE[2025-01-04 16:02:54.499][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:54.500][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:54.501][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:54.502][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:54.503][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:54.504][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:54.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:54.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:54.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:54.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:54.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:54.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:54.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:54.519][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.DEBUG[2025-01-04 16:02:54.523][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:54.523][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:54.525][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
biodb.TRACE[2025-01-04 16:02:55.103][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338).
biodb.DEBUG[2025-01-04 16:02:55.618][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:55.623][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.content"
biodb.TRACE[2025-01-04 16:02:55.630][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e64dda61e0a44a21c5b0eb3609a4a7b.request"
biodb.TRACE[2025-01-04 16:02:55.635][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/72338.xml"
biodb.DEBUG[2025-01-04 16:02:55.638][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:55.641][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:55.644][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:55.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:55.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:55.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:55.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:55.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:55.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:55.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:55.671][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:55.673][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:55.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.676][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:55.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:55.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:55.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:55.684][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:55.685][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:55.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.688][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:55.690][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:55.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:55.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:55.694][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:55.696][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:55.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.698][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:55.699][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:55.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:55.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:55.703][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:55.704][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:55.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.706][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:55.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:55.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:55.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:55.711][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:55.712][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:55.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.714][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:55.715][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:55.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:55.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:55.719][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:55.719][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:55.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.721][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:55.722][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:55.723][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:55.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.725][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:55.726][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:55.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:55.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:55.729][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:55.730][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:55.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.732][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:55.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:55.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:55.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:55.737][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:55.738][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:55.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.739][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:55.741][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:55.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:55.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:55.744][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:55.745][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:55.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.747][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:55.748][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:55.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:55.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:55.751][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:55.752][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:55.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.754][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:55.755][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:55.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:55.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:55.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:55.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:55.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:55.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:55.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:55.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:55.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:55.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:55.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:55.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:55.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:55.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:55.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:55.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:55.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:55.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:55.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:55.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:55.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:55.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:55.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:55.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:55.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:55.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:55.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:55.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:55.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:55.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:55.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:55.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:55.794][self$createEntryFromContent] Accession numbers: 72338.
biodb.TRACE[2025-01-04 16:02:55.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:55.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:55.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:55.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:55.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:55.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:55.802][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:55.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:55.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:55.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:55.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:55.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:55.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:55.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:55.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:55.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:55.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:55.824][private$loadEntries] Creating entries from ids [1]: "77926".
biodb.DEBUG[2025-01-04 16:02:55.825][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:55.826][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77926".
biodb.TRACE[2025-01-04 16:02:55.827][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:55.828][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:55.829][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:55.830][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:55.831][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:55.832][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:55.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:55.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:55.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:55.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:55.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:55.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:55.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:55.843][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.DEBUG[2025-01-04 16:02:55.846][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:55.847][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:55.848][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
biodb.TRACE[2025-01-04 16:02:56.239][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926).
biodb.DEBUG[2025-01-04 16:02:56.592][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:56.594][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.content"
biodb.TRACE[2025-01-04 16:02:56.597][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9ad4fcb4fcba98dcbec5ee6292352f7b.request"
biodb.TRACE[2025-01-04 16:02:56.599][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77926.xml"
biodb.DEBUG[2025-01-04 16:02:56.601][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:56.602][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:56.603][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:56.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:56.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:56.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:56.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:56.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:56.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:56.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:56.614][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:56.615][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:56.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.617][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:56.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:56.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:56.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:56.622][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:56.623][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:56.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.624][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:56.625][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:56.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:56.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:56.629][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:56.630][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:56.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.631][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:56.633][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:56.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:56.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:56.636][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:56.637][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:56.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.639][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:56.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:56.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:56.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:56.643][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:56.644][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:56.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.646][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:56.647][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:56.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:56.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:56.651][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:56.652][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:56.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.653][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:56.654][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:56.655][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:56.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.657][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:56.658][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:56.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:56.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:56.662][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:56.662][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:56.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.664][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:56.665][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:56.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:56.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:56.669][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:56.670][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:56.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.671][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:56.673][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:56.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:56.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:56.676][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:56.677][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:56.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.679][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:56.680][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:56.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:56.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:56.684][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:56.685][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:56.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.687][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:56.688][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:56.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:56.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:56.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:56.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:56.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:56.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:56.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:56.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:56.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:56.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:56.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:56.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:56.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:56.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:56.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:56.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:56.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:56.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:56.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:56.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:56.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:56.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:56.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:56.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:56.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:56.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:56.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:56.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:56.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:56.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:56.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:56.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:56.736][self$createEntryFromContent] Accession numbers: 77926.
biodb.TRACE[2025-01-04 16:02:56.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:56.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:56.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:56.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:56.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:56.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:56.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:56.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:56.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:56.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:56.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:56.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:56.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:56.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:56.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:56.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:56.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:56.756][private$loadEntries] Creating entries from ids [1]: "82369".
biodb.DEBUG[2025-01-04 16:02:56.757][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:56.759][cch$loadFileContent] Trying to load 1 files from cache: [1]: "82369".
biodb.TRACE[2025-01-04 16:02:56.760][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:56.761][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:56.762][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:56.763][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:56.764][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:56.764][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:56.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:56.768][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:56.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:56.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:56.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:56.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:56.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:56.776][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.DEBUG[2025-01-04 16:02:56.778][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:56.779][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:56.780][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
biodb.TRACE[2025-01-04 16:02:57.230][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369).
biodb.DEBUG[2025-01-04 16:02:57.617][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:57.621][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.content"
biodb.TRACE[2025-01-04 16:02:57.628][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/141011223a89b45316c20d1fd91b47fd.request"
biodb.TRACE[2025-01-04 16:02:57.633][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/82369.xml"
biodb.DEBUG[2025-01-04 16:02:57.636][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:57.639][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:57.641][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:57.644][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:57.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:57.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:57.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:57.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:57.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:57.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:57.667][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:57.668][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:57.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.671][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:57.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:57.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:57.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:57.679][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:57.680][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:57.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.683][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:57.684][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:57.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:57.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:57.689][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:57.690][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:57.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.693][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:57.694][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:57.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:57.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:57.698][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:57.699][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:57.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.701][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:57.702][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:57.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:57.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:57.706][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:57.707][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:57.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.709][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:57.710][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:57.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:57.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:57.714][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:57.715][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:57.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.717][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:57.718][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:57.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:57.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:57.721][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:57.722][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:57.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.724][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:57.725][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:57.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:57.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:57.729][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:57.730][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:57.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.731][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:57.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:57.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:57.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:57.736][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:57.737][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:57.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.739][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:57.740][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:57.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:57.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:57.744][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:57.745][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:57.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.755][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:57.756][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:57.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:57.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:57.760][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:57.761][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:57.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.762][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:57.763][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:57.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:57.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:57.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:57.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:57.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:57.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:57.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:57.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:57.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:57.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:57.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:57.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:57.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:57.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:57.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:57.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:57.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:57.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:57.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:57.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:57.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:57.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:57.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:57.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:57.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:57.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:57.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:57.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:57.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:57.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:57.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:57.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:57.802][self$createEntryFromContent] Accession numbers: 82369.
biodb.TRACE[2025-01-04 16:02:57.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:57.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:57.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:57.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:57.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:57.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:57.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:57.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:57.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:57.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:57.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:57.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:57.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:57.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:57.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:57.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:57.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:57.823][private$loadEntries] Creating entries from ids [1]: "90204".
biodb.DEBUG[2025-01-04 16:02:57.824][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:57.825][cch$loadFileContent] Trying to load 1 files from cache: [1]: "90204".
biodb.TRACE[2025-01-04 16:02:57.826][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:57.827][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:57.828][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:57.829][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:57.830][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:57.831][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:57.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:57.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:57.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:57.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:57.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:57.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:57.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:57.842][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.DEBUG[2025-01-04 16:02:57.845][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:57.846][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:57.847][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
biodb.TRACE[2025-01-04 16:02:58.228][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204).
biodb.DEBUG[2025-01-04 16:02:58.679][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:58.681][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.content"
biodb.TRACE[2025-01-04 16:02:58.684][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/bd50d349ae7e6e2bbccffc7e4e5f18de.request"
biodb.TRACE[2025-01-04 16:02:58.686][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/90204.xml"
biodb.DEBUG[2025-01-04 16:02:58.687][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:58.688][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:58.689][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:58.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:58.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:58.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:58.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:58.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:58.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:58.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:58.701][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:58.702][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:58.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.704][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:58.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:58.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:58.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:58.708][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:58.709][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:58.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.711][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:58.712][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:58.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:58.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:58.716][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:58.717][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:58.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.718][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:58.720][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:58.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:58.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:58.723][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:58.724][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:58.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.726][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:58.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:58.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:58.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:58.731][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:58.731][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:58.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.733][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:58.734][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:58.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:58.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:58.749][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:58.750][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:58.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.752][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:58.753][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:58.754][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:58.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.756][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:58.757][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:58.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:58.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:58.760][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:58.761][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:58.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.763][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:58.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:58.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:58.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:58.768][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:58.769][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:58.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.770][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:58.771][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:58.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:58.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:58.775][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:58.776][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:58.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.778][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:58.779][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:58.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:58.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:58.782][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:58.783][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:58.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.785][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:58.786][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:58.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:58.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:58.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:58.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:58.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:58.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:58.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:58.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:58.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:58.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:58.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:58.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:58.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:58.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:58.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:58.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:58.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:58.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:58.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:58.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:58.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:58.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:58.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:58.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:58.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:58.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:58.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:58.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:58.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:58.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:58.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:58.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:58.824][self$createEntryFromContent] Accession numbers: 90204.
biodb.TRACE[2025-01-04 16:02:58.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:58.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:58.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:58.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:58.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:58.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:58.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:58.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:58.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:58.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:58.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:58.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:58.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:58.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:58.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:58.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:58.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:58.845][private$loadEntries] Creating entries from ids [1]: "132793".
biodb.DEBUG[2025-01-04 16:02:58.846][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:02:58.847][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132793".
biodb.TRACE[2025-01-04 16:02:58.848][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:02:58.849][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:02:58.850][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:02:58.851][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:02:58.852][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:02:58.853][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:02:58.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:58.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:58.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:58.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:58.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:58.862][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:58.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:02:58.864][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.DEBUG[2025-01-04 16:02:58.866][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:02:58.867][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:02:58.869][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
biodb.TRACE[2025-01-04 16:02:59.268][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793).
biodb.DEBUG[2025-01-04 16:02:59.706][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:02:59.711][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.content"
biodb.TRACE[2025-01-04 16:02:59.718][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a797bec3bbec3ca7a5b4b96140b735a3.request"
biodb.TRACE[2025-01-04 16:02:59.723][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132793.xml"
biodb.DEBUG[2025-01-04 16:02:59.726][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:02:59.728][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:02:59.731][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:02:59.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:59.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:59.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:59.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:59.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:59.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:59.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:59.757][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:59.758][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:59.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.762][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:59.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:59.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.769][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:59.776][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:59.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.783][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.785][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:02:59.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:02:59.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.790][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:59.791][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:59.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.793][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.794][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:02:59.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:02:59.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.798][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:59.799][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:59.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.800][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:02:59.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:02:59.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.805][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:59.806][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:59.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.808][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:02:59.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:02:59.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.813][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:59.814][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:59.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.815][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.816][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:59.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:02:59.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.820][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:59.821][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:59.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.823][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.824][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:02:59.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:59.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.827][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:59.828][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:59.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.830][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:59.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:02:59.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.835][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:59.835][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:59.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.837][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.838][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:02:59.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:02:59.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.842][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:59.843][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:59.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.844][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.846][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:02:59.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:02:59.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.849][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:59.850][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:59.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.852][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.853][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:02:59.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:02:59.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:59.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:59.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:59.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:59.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:59.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:59.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:59.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:59.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:59.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:59.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:59.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:59.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:02:59.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:02:59.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:59.891][self$createEntryFromContent] Accession numbers: 132793.
biodb.TRACE[2025-01-04 16:02:59.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:59.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:59.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:59.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:59.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:59.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:02:59.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:02:59.903][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:02:59.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:59.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:59.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:59.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:59.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:59.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:59.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:59.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.921][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:59.922][private$selectFields]
biodb.TRACE[2025-01-04 16:02:59.923][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:59.924][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:59.925][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:59.926][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.927][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.928][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.929][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.930][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.932][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.933][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:59.934][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:59.935][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.936][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.937][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.943][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:59.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.955][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2025-01-04 16:02:59.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:02:59.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:02:59.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:02:59.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:02:59.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:02:59.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:02:59.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:02:59.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.972][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:59.973][private$selectFields]
biodb.TRACE[2025-01-04 16:02:59.974][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:02:59.975][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:02:59.975][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:59.976][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.977][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.979][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.980][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.981][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.982][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.983][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:59.984][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:02:59.985][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.986][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.988][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.988][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:02:59.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:02:59.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:02:59.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:02:59.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:00.000][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2025-01-04 16:03:00.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:00.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:00.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:00.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:00.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:00.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:00.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:00.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:00.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:00.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:00.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:00.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:00.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:00.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:00.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:00.017][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:00.018][private$selectFields]
biodb.TRACE[2025-01-04 16:03:00.019][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:00.019][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:00.020][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:00.021][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:00.022][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:00.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:00.024][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:00.025][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:00.026][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:00.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:00.027][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:00.028][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:00.029][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:00.030][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:00.031][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:00.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:00.032][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:00.033][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:00.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:00.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:00.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:00.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:00.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:00.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:00.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:00.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:00.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:00.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:00.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:00.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:00.045][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2025-01-04 16:03:00.046][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:03:00.047][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:03:00.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:00.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:00.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:00.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:00.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:00.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:00.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:00.059][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:03:00.062][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:00.063][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:00.064][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-01-04 16:03:00.407][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-01-04 16:03:00.754][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:00.756][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content"
biodb.TRACE[2025-01-04 16:03:00.760][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.request"
biodb.DEBUG[2025-01-04 16:03:00.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:00.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:00.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:00.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:00.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:00.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:00.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:00.772][private$loadEntries] Creating entries from ids [1]: "131378".
biodb.DEBUG[2025-01-04 16:03:00.773][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:00.774][cch$loadFileContent] Trying to load 1 files from cache: [1]: "131378".
biodb.TRACE[2025-01-04 16:03:00.776][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:00.777][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:00.778][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:00.779][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:00.780][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:00.781][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:00.783][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:00.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:00.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:00.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:00.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:00.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:00.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:00.801][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.DEBUG[2025-01-04 16:03:00.804][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:00.805][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:00.806][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
biodb.TRACE[2025-01-04 16:03:01.175][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378).
biodb.DEBUG[2025-01-04 16:03:01.510][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:01.512][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.content"
biodb.TRACE[2025-01-04 16:03:01.515][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5b759b1dd2dc96585e60782e41aa0772.request"
biodb.TRACE[2025-01-04 16:03:01.517][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/131378.xml"
biodb.DEBUG[2025-01-04 16:03:01.519][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:01.520][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:01.521][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:01.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:01.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:01.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:01.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:01.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:01.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:01.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:01.533][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:01.534][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:01.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.536][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:01.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:01.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:01.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:01.541][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:01.542][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:01.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.544][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:01.545][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:01.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:01.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:01.549][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:01.550][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:01.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.552][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:01.553][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:01.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:01.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:01.556][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:01.557][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:01.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.559][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:01.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:01.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:01.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:01.564][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:01.565][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:01.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.567][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:01.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:01.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:01.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:01.571][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:01.572][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:01.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.574][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:01.575][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:01.576][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:01.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.577][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:01.578][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:01.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:01.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:01.582][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:01.583][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:01.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.584][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:01.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:01.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:01.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:01.589][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:01.590][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:01.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.592][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:01.593][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:01.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:01.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:01.596][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:01.597][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:01.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.599][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:01.600][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:01.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:01.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:01.603][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:01.604][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:01.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.606][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:01.607][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:01.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:01.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:01.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:01.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:01.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:01.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:01.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:01.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:01.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:01.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:01.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:01.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:01.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:01.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:01.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:01.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:01.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:01.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:01.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:01.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:01.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:01.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:01.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:01.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:01.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:01.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:01.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:01.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:01.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:01.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:01.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:01.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:01.646][self$createEntryFromContent] Accession numbers: 131378.
biodb.TRACE[2025-01-04 16:03:01.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:01.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:01.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:01.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:01.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:01.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:01.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:01.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:01.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:01.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:01.666][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:01.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:01.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:01.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:01.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:01.673][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:01.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:01.675][private$loadEntries] Creating entries from ids [1]: "214202".
biodb.DEBUG[2025-01-04 16:03:01.676][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:01.677][cch$loadFileContent] Trying to load 1 files from cache: [1]: "214202".
biodb.TRACE[2025-01-04 16:03:01.679][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:01.679][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:01.680][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:01.681][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:01.682][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:01.683][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:01.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:01.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:01.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:01.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:01.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:01.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:01.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:01.694][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202".
biodb.DEBUG[2025-01-04 16:03:01.697][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:01.697][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:01.699][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202".
biodb.TRACE[2025-01-04 16:03:02.084][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202).
biodb.DEBUG[2025-01-04 16:03:02.427][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:02.429][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf9a3fb7c59af59e06fd510ceb170574.content"
biodb.TRACE[2025-01-04 16:03:02.432][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf9a3fb7c59af59e06fd510ceb170574.request"
biodb.TRACE[2025-01-04 16:03:02.435][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/214202.xml"
biodb.DEBUG[2025-01-04 16:03:02.436][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:02.437][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:02.438][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:02.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:02.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:02.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:02.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:02.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:02.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:02.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:02.450][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:02.451][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:02.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.453][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:02.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:02.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:02.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:02.458][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:02.459][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:02.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.460][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:02.462][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:02.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:02.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:02.465][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:02.466][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:02.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.468][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:02.469][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:02.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:02.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:02.473][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:02.474][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:02.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.476][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:02.477][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:02.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:02.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:02.481][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:02.482][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:02.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.483][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:02.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:02.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:02.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:02.488][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:02.489][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:02.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.490][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:02.492][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:02.492][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:02.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.494][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:02.495][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:02.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:02.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:02.499][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:02.500][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:02.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.501][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:02.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:02.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:02.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:02.506][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:02.507][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:02.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.509][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:02.510][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:02.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:02.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:02.513][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:02.514][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:02.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.516][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:02.517][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:02.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:02.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:02.521][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:02.522][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:02.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.523][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:02.524][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:02.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:02.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:02.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:02.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:02.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:02.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:02.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:02.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:02.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:02.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:02.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:02.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:02.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:02.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:02.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:02.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:02.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:02.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:02.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:02.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:02.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:02.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:02.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:02.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:02.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:02.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:02.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:02.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:02.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:02.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:02.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:02.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:02.572][self$createEntryFromContent] Accession numbers: 214202.
biodb.TRACE[2025-01-04 16:03:02.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:02.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:02.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:02.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:02.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:02.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:02.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:02.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:02.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:02.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:02.584][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:03:02.587][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:02.588][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:02.589][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-01-04 16:03:02.930][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-01-04 16:03:03.276][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:03.279][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content"
biodb.TRACE[2025-01-04 16:03:03.282][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.request"
biodb.DEBUG[2025-01-04 16:03:03.285][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:03.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:03.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:03.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:03.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:03.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:03.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:03.294][private$loadEntries] Creating entries from ids [1]: "51836".
biodb.DEBUG[2025-01-04 16:03:03.295][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:03.296][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51836".
biodb.TRACE[2025-01-04 16:03:03.297][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:03.298][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:03.299][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:03.300][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:03.301][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:03.302][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:03.305][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:03.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:03.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:03.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:03.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:03.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:03.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:03.314][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.DEBUG[2025-01-04 16:03:03.316][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:03.317][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:03.319][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
biodb.TRACE[2025-01-04 16:03:03.688][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836).
biodb.DEBUG[2025-01-04 16:03:04.034][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:04.036][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.content"
biodb.TRACE[2025-01-04 16:03:04.039][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1fe2079ad59bca4bc82b2cd14ed8e8a1.request"
biodb.TRACE[2025-01-04 16:03:04.041][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51836.xml"
biodb.DEBUG[2025-01-04 16:03:04.042][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:04.044][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:04.045][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:04.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:04.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:04.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:04.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:04.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:04.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:04.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:04.057][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:04.058][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:04.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.060][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:04.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:04.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:04.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:04.065][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:04.066][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:04.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.067][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:04.069][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:04.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:04.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:04.073][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:04.074][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:04.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.076][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:04.077][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:04.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:04.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:04.081][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:04.082][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:04.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.084][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:04.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:04.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:04.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:04.088][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:04.089][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:04.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.091][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:04.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:04.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:04.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:04.096][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:04.097][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:04.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.098][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:04.100][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:04.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:04.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:04.103][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:04.104][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:04.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.116][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:04.117][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:04.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:04.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:04.122][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:04.123][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:04.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.124][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:04.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:04.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:04.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:04.129][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:04.130][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:04.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.131][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:04.133][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:04.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:04.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:04.136][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:04.137][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:04.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.139][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:04.140][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:04.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:04.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:04.143][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:04.144][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:04.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.146][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:04.147][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:04.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:04.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:04.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:04.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:04.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:04.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:04.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:04.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:04.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:04.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:04.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:04.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:04.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:04.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:04.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:04.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:04.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:04.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:04.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:04.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:04.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:04.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:04.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:04.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:04.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:04.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:04.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:04.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:04.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:04.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:04.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:04.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:04.185][self$createEntryFromContent] Accession numbers: 51836.
biodb.TRACE[2025-01-04 16:03:04.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:04.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:04.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:04.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:04.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:04.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:04.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:04.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:04.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:04.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:04.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:04.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:04.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:04.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:04.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:04.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:04.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:04.206][private$loadEntries] Creating entries from ids [1]: "51837".
biodb.DEBUG[2025-01-04 16:03:04.206][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:04.208][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51837".
biodb.TRACE[2025-01-04 16:03:04.209][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:04.210][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:04.211][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:04.212][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:04.213][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:04.213][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:04.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:04.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:04.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:04.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:04.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:04.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:04.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:04.225][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.DEBUG[2025-01-04 16:03:04.227][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:04.228][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:04.229][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
biodb.TRACE[2025-01-04 16:03:04.596][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837).
biodb.DEBUG[2025-01-04 16:03:05.022][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:05.024][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.content"
biodb.TRACE[2025-01-04 16:03:05.027][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1588f004fb5de8667ae1af7433b2932e.request"
biodb.TRACE[2025-01-04 16:03:05.030][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51837.xml"
biodb.DEBUG[2025-01-04 16:03:05.031][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:05.032][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:05.033][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:05.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:05.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:05.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:05.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:05.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:05.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:05.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:05.046][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:05.047][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:05.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.049][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:05.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:05.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:05.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:05.054][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:05.055][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:05.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.056][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:05.057][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:05.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:05.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:05.066][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:05.071][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:05.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.073][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:05.074][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:05.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:05.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:05.078][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:05.079][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:05.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.080][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:05.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:05.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:05.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:05.085][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:05.086][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:05.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.088][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:05.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:05.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:05.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:05.092][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:05.093][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:05.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.095][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:05.096][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:05.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:05.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:05.099][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:05.100][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:05.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.102][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:05.103][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:05.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:05.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:05.107][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:05.107][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:05.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.109][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:05.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:05.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:05.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:05.114][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:05.115][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:05.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.116][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:05.117][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:05.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:05.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:05.121][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:05.122][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:05.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.123][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:05.124][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:05.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:05.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:05.128][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:05.129][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:05.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.131][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:05.132][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:05.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:05.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:05.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:05.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:05.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:05.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:05.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:05.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:05.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:05.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:05.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:05.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:05.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:05.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:05.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:05.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:05.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:05.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:05.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:05.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:05.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:05.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:05.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:05.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:05.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:05.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:05.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:05.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:05.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:05.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:05.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:05.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:05.170][self$createEntryFromContent] Accession numbers: 51837.
biodb.TRACE[2025-01-04 16:03:05.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:05.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:05.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:05.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:05.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:05.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:05.178][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:05.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:05.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:05.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:05.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:05.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:05.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:05.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:05.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:05.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:05.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:05.190][private$loadEntries] Creating entries from ids [1]: "132205".
biodb.DEBUG[2025-01-04 16:03:05.191][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:05.193][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132205".
biodb.TRACE[2025-01-04 16:03:05.194][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:05.195][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:05.196][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:05.197][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:05.197][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:05.198][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:05.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:05.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:05.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:05.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:05.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:05.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:05.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:05.210][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.DEBUG[2025-01-04 16:03:05.212][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:05.213][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:05.214][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
biodb.TRACE[2025-01-04 16:03:05.780][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205).
biodb.DEBUG[2025-01-04 16:03:06.134][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:06.137][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.content"
biodb.TRACE[2025-01-04 16:03:06.148][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bfa2ac1d845d7db5b781e9a39528bb3.request"
biodb.TRACE[2025-01-04 16:03:06.151][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132205.xml"
biodb.DEBUG[2025-01-04 16:03:06.153][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:06.154][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:06.156][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:06.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:06.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:06.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:06.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:06.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:06.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:06.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:06.171][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:06.172][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:06.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.175][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:06.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:06.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.181][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:06.182][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:06.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.184][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.185][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:06.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:06.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.189][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:06.190][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:06.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.192][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.193][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:06.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:06.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.197][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:06.198][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:06.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.199][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.200][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:06.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:06.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.204][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:06.205][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:06.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.206][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:06.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:06.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.211][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:06.212][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:06.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.214][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.215][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:06.216][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.217][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.218][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:06.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.222][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:06.223][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:06.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.224][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:06.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:06.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.229][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:06.230][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:06.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.231][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.233][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:06.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:06.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.236][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:06.237][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:06.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.239][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.240][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:06.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:06.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.243][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:06.244][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:06.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.246][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.247][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:06.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:06.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:06.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:06.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:06.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:06.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:06.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:06.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:06.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:06.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:06.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:06.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:06.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:06.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:06.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:06.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:06.286][self$createEntryFromContent] Accession numbers: 132205.
biodb.TRACE[2025-01-04 16:03:06.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:06.297][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:03:06.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:06.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:06.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:06.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:06.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:06.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:06.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:06.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.320][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.321][private$selectFields]
biodb.TRACE[2025-01-04 16:03:06.322][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:06.322][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:06.323][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.324][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.325][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.327][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.328][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.328][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.330][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.331][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.332][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.333][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.334][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.335][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.336][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:06.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.348][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2025-01-04 16:03:06.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:06.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:06.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:06.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:06.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:06.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:06.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:06.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.364][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.365][private$selectFields]
biodb.TRACE[2025-01-04 16:03:06.366][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:06.367][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:06.368][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.369][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.370][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.371][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.372][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.373][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.375][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.376][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.377][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.377][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.378][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.380][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.381][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:06.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.392][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2025-01-04 16:03:06.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:06.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:06.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:06.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:06.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:06.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:06.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:06.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.409][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.410][private$selectFields]
biodb.TRACE[2025-01-04 16:03:06.411][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:06.412][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:06.412][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.413][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.414][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.416][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.417][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.418][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.419][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.420][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.421][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.422][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.423][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.424][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.425][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:06.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.437][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2025-01-04 16:03:06.438][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:03:06.439][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:03:06.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:06.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:06.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:06.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:06.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:06.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:06.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:06.471][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:03:06.473][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:03:06.475][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-01-04 16:03:06.476][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:03:06.477][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-01-04 16:03:06.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:06.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:06.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:06.484][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:06.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:06.486][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:06.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:06.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:06.499][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:03:06.501][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:03:06.502][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-01-04 16:03:06.504][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:03:06.505][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-01-04 16:03:06.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:06.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:06.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:06.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:06.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:06.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:06.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:06.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.522][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:06.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:06.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:06.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:06.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:06.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:06.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:06.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:06.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:06.545][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:03:06.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:06.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:06.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:06.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:06.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:06.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:06.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:06.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.562][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.563][private$selectFields]
biodb.TRACE[2025-01-04 16:03:06.563][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:06.564][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:06.565][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.566][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.567][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.568][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.569][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.570][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.572][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.573][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.574][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.575][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.575][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.577][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.578][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:06.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.590][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-01-04 16:03:06.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:06.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:06.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:06.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:06.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:06.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:06.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:06.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.607][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.608][private$selectFields]
biodb.TRACE[2025-01-04 16:03:06.609][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:06.609][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:06.610][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.611][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.612][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.614][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.615][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.616][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.622][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.623][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.624][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.625][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.626][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.628][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.629][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:06.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.640][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-01-04 16:03:06.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:06.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:06.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:06.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:06.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:06.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:06.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:06.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.657][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.658][private$selectFields]
biodb.TRACE[2025-01-04 16:03:06.659][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:06.660][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:06.661][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.662][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.663][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.664][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.665][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.666][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.668][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.669][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.669][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.670][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.671][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.673][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.674][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:06.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.685][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-01-04 16:03:06.686][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:03:06.687][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:03:06.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:06.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:06.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:06.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:06.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:06.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:06.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:06.699][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:03:06.702][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:03:06.703][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-01-04 16:03:06.704][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:03:06.705][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-01-04 16:03:06.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:06.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:06.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:06.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:06.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:06.714][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:06.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:06.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:06.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:06.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:06.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:06.731][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:06.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:06.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:06.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:06.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:06.746][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:03:06.749][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:03:06.750][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-01-04 16:03:06.751][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:03:06.753][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-01-04 16:03:06.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:06.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:06.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:06.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:06.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:06.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:06.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:06.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:06.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:06.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:06.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:06.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:06.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:06.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:06.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:06.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:06.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:06.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:06.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:06.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:06.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:06.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:06.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:06.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:06.819][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:03:06.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:06.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:06.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:06.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:06.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:06.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:06.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:06.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.836][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.837][private$selectFields]
biodb.TRACE[2025-01-04 16:03:06.838][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:06.838][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:06.839][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.840][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.841][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.843][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.844][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.845][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.846][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.847][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.848][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.849][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.850][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.851][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.852][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:06.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.864][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-01-04 16:03:06.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:06.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:06.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:06.870][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:06.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:06.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:06.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:06.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.880][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.881][private$selectFields]
biodb.TRACE[2025-01-04 16:03:06.882][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:06.883][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:06.884][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.885][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.885][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.887][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.888][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.889][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.891][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.891][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.892][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.893][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.894][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.896][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.897][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:06.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.909][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-01-04 16:03:06.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:06.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:06.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:06.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:06.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:06.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:06.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:06.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.926][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.926][private$selectFields]
biodb.TRACE[2025-01-04 16:03:06.927][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:06.932][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:06.933][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.935][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.936][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.938][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.938][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.939][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.941][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.942][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.943][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:06.944][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.945][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.946][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.947][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:06.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:06.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.959][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-01-04 16:03:06.960][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:03:06.960][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:03:06.962][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:06.963][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:06.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:06.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:06.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:06.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:06.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:06.972][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:03:06.975][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:03:06.976][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-01-04 16:03:06.977][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:03:06.978][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-01-04 16:03:06.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:06.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:06.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:06.986][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:06.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:06.988][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:06.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:06.989][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:06.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:06.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:06.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:07.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:07.001][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:07.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:07.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:07.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:07.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:07.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:07.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:07.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:07.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:07.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:07.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:07.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:07.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:07.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:07.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.031][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:07.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:07.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:07.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:07.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:07.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:07.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:07.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:07.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:07.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:07.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:07.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:07.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:07.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:07.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:07.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:07.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:07.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:07.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:07.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:07.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:07.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:07.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:07.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:07.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:07.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:07.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:07.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:07.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:07.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:07.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:07.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:07.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:07.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:07.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:07.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:07.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:07.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:07.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:07.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:07.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:07.141][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:03:07.144][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:03:07.145][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-01-04 16:03:07.146][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:03:07.147][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-01-04 16:03:07.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:07.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:07.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:07.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:07.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:07.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:07.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:07.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:07.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:07.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:07.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:07.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:07.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:07.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:07.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:07.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:07.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:07.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:07.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:07.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:07.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:07.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:07.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:07.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:07.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:07.207][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:03:07.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:07.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:07.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:07.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:07.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:07.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:07.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:07.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.225][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:07.226][private$selectFields]
biodb.TRACE[2025-01-04 16:03:07.227][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:07.227][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:07.228][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:07.229][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.230][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.232][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.233][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.234][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.235][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.236][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:07.237][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:07.242][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.243][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.246][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.247][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:07.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.258][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-01-04 16:03:07.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:07.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:07.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:07.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:07.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:07.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:07.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:07.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.275][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:07.276][private$selectFields]
biodb.TRACE[2025-01-04 16:03:07.277][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:07.278][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:07.279][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:07.280][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.281][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.282][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.283][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.284][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.286][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.287][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:07.287][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:07.288][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.289][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.291][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.292][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:07.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.303][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-01-04 16:03:07.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:07.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:07.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:07.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:07.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:07.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:07.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:07.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.320][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:07.321][private$selectFields]
biodb.TRACE[2025-01-04 16:03:07.322][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:07.323][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:07.324][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:07.324][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.325][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.327][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.328][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.329][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.330][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.331][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:07.332][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:07.333][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.334][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.336][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.336][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:07.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:07.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:07.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:07.348][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-01-04 16:03:07.349][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:03:07.350][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:03:07.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:07.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:07.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:07.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:07.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:07.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:07.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:07.376][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:03:07.379][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:07.380][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:07.382][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-01-04 16:03:07.730][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-01-04 16:03:08.093][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:08.096][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content"
biodb.TRACE[2025-01-04 16:03:08.102][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.request"
biodb.DEBUG[2025-01-04 16:03:08.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:08.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:08.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:08.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:08.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:08.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:08.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:08.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:08.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:08.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:08.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:08.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:08.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:08.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:08.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:08.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:08.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:08.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:08.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:08.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:08.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:08.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:08.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:08.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:08.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:08.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:08.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:08.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:08.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:08.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:08.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:08.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:08.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:08.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:08.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:08.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:08.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:08.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:08.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:08.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:08.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:08.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:08.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:08.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:08.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:08.187][private$loadEntries] Creating entries from ids [1]: "28243".
biodb.DEBUG[2025-01-04 16:03:08.188][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:08.190][cch$loadFileContent] Trying to load 1 files from cache: [1]: "28243".
biodb.TRACE[2025-01-04 16:03:08.191][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:08.192][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:08.193][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:08.193][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:08.194][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:08.195][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:08.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:08.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:08.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:08.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:08.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:08.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:08.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:08.206][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.DEBUG[2025-01-04 16:03:08.209][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:08.209][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:08.211][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
biodb.TRACE[2025-01-04 16:03:08.865][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243).
biodb.DEBUG[2025-01-04 16:03:09.224][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:09.226][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.content"
biodb.TRACE[2025-01-04 16:03:09.229][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/177c3a227615d232b537605885883911.request"
biodb.TRACE[2025-01-04 16:03:09.232][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/28243.xml"
biodb.DEBUG[2025-01-04 16:03:09.233][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:09.234][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:09.235][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:09.237][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:09.238][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:09.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:09.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:09.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:09.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:09.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:09.247][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:09.248][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:09.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.250][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:09.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:09.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.255][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:09.256][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:09.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.258][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.259][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:09.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:09.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.263][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:09.264][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:09.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.266][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.267][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:09.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:09.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.271][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:09.272][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:09.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.273][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:09.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:09.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.278][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:09.279][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:09.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.281][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:09.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:09.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.286][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:09.287][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:09.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.288][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.289][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:09.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:09.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.293][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:09.294][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:09.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.296][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.297][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:09.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:09.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.300][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:09.301][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:09.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.303][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:09.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:09.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.317][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:09.318][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:09.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.319][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.321][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:09.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:09.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.324][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:09.325][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:09.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.327][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.328][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:09.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:09.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.332][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:09.332][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:09.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.334][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.335][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:09.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:09.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:09.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:09.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:09.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:09.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:09.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:09.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:09.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:09.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:09.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:09.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:09.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:09.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:09.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:09.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:09.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:09.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:09.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:09.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:09.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:09.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:09.374][self$createEntryFromContent] Accession numbers: 28243.
biodb.TRACE[2025-01-04 16:03:09.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:09.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:09.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:09.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:09.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:09.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:09.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:09.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:09.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:09.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:09.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:09.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:09.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:09.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:09.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:09.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:09.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:09.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:09.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:09.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:09.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:09.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:09.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:09.405][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:09.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:09.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:09.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:09.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:09.412][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:09.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:09.414][private$loadEntries] Creating entries from ids [1]: "70786".
biodb.DEBUG[2025-01-04 16:03:09.415][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:09.416][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70786".
biodb.TRACE[2025-01-04 16:03:09.417][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:09.418][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:09.419][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:09.420][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:09.421][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:09.422][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:09.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:09.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:09.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:09.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:09.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:09.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:09.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:09.433][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.DEBUG[2025-01-04 16:03:09.436][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:09.437][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:09.438][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
biodb.TRACE[2025-01-04 16:03:09.817][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786).
biodb.DEBUG[2025-01-04 16:03:10.271][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:10.276][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.content"
biodb.TRACE[2025-01-04 16:03:10.283][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ea24f2a708fc4a90f6eff28b49d993c4.request"
biodb.TRACE[2025-01-04 16:03:10.288][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70786.xml"
biodb.DEBUG[2025-01-04 16:03:10.291][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:10.294][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:10.297][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:10.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:10.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:10.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:10.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:10.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:10.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:10.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:10.322][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:10.324][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:10.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.336][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:10.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:10.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:10.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:10.342][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:10.343][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:10.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.345][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:10.347][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:10.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:10.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:10.351][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:10.352][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:10.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.354][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:10.355][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:10.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:10.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:10.359][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:10.360][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:10.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.361][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:10.362][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:10.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:10.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:10.366][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:10.367][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:10.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.369][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:10.370][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:10.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:10.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:10.373][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:10.374][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:10.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.376][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:10.377][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:10.378][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:10.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.380][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:10.381][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:10.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:10.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:10.384][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:10.385][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:10.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.387][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:10.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:10.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:10.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:10.391][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:10.392][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:10.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.394][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:10.395][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:10.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:10.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:10.399][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:10.400][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:10.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.401][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:10.403][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:10.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:10.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:10.406][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:10.407][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:10.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.409][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:10.410][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:10.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:10.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:10.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:10.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:10.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:10.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:10.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:10.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:10.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:10.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:10.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:10.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:10.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:10.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:10.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:10.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:10.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:10.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:10.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:10.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:10.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:10.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:10.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:10.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:10.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:10.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:10.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:10.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:10.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:10.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:10.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:10.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:10.449][self$createEntryFromContent] Accession numbers: 70786.
biodb.TRACE[2025-01-04 16:03:10.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:10.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:10.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:10.453][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:10.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:10.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:10.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:10.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:10.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:10.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:10.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:10.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:10.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:10.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:10.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:10.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:10.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:10.470][private$loadEntries] Creating entries from ids [1]: "78144".
biodb.DEBUG[2025-01-04 16:03:10.471][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:10.472][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78144".
biodb.TRACE[2025-01-04 16:03:10.473][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:10.474][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:10.475][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:10.476][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:10.477][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:10.478][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:10.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:10.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:10.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:10.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:10.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:10.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:10.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:10.494][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.DEBUG[2025-01-04 16:03:10.497][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:10.498][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:10.499][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
biodb.TRACE[2025-01-04 16:03:10.862][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144).
biodb.DEBUG[2025-01-04 16:03:11.212][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:11.214][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.content"
biodb.TRACE[2025-01-04 16:03:11.217][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ede5a640bd42c7611e16282ef185b74.request"
biodb.TRACE[2025-01-04 16:03:11.219][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78144.xml"
biodb.DEBUG[2025-01-04 16:03:11.221][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:11.222][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:11.223][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:11.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:11.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:11.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:11.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:11.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:11.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:11.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:11.237][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:11.239][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:11.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.242][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:11.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:11.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.249][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:11.250][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:11.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.252][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.254][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:11.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:11.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.258][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:11.260][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:11.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.262][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.263][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:11.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:11.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.267][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:11.268][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:11.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.270][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.271][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:11.272][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:11.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.274][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.275][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:11.276][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:11.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.277][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.278][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:11.279][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:11.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.281][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.282][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:11.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:11.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.286][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:11.287][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:11.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.288][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:11.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:11.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.293][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:11.294][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:11.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.296][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.297][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:11.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:11.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.300][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:11.301][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:11.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.303][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.304][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:11.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:11.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.308][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:11.308][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:11.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.310][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.311][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:11.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:11.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:11.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:11.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:11.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:11.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:11.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:11.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:11.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:11.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:11.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:11.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:11.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:11.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:11.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:11.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:11.350][self$createEntryFromContent] Accession numbers: 78144.
biodb.TRACE[2025-01-04 16:03:11.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:11.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:11.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:11.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:11.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:11.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:11.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:11.362][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:03:11.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:11.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:11.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:11.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:11.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:11.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:11.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:11.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.390][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:11.391][private$selectFields]
biodb.TRACE[2025-01-04 16:03:11.391][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:11.392][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:11.393][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:11.394][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.395][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.397][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.398][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.399][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.401][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.401][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:11.402][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:11.403][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.404][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.406][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.407][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:11.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.418][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-01-04 16:03:11.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:11.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:11.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:11.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:11.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:11.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:11.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:11.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.435][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:11.436][private$selectFields]
biodb.TRACE[2025-01-04 16:03:11.437][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:11.437][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:11.438][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:11.439][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.440][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.442][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.443][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.444][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.445][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.446][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:11.447][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:11.448][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.449][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.450][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.451][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:11.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.463][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2025-01-04 16:03:11.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:11.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:11.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:11.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:11.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:11.471][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:11.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:11.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.479][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:11.480][private$selectFields]
biodb.TRACE[2025-01-04 16:03:11.481][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:11.482][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:11.483][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:11.484][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.484][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.486][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.487][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.488][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.490][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.491][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:11.491][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:11.492][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.493][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.495][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.496][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:11.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:11.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:11.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:11.508][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2025-01-04 16:03:11.509][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:03:11.510][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:03:11.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:11.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:11.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:11.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:11.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:11.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:11.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:11.522][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:03:11.535][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:11.536][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:11.538][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-01-04 16:03:12.147][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-01-04 16:03:12.660][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:12.662][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content"
biodb.TRACE[2025-01-04 16:03:12.666][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.request"
biodb.DEBUG[2025-01-04 16:03:12.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:12.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:12.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:12.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:12.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:12.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:12.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:12.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:12.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:12.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:12.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:12.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:12.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:12.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:12.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:12.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:12.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:12.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:12.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:12.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:12.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:12.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:12.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:12.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:12.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:12.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:12.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:12.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:12.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:12.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:12.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:12.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:12.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:12.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:12.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:12.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:12.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:12.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:12.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:12.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:12.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:12.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:12.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:12.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:12.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:12.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:12.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:12.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:12.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:12.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:12.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:12.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:12.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:12.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:12.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:12.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:12.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:12.728][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:03:12.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:12.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:12.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:12.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:12.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:12.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:12.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:12.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:12.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:12.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:12.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:12.745][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:12.746][private$selectFields]
biodb.TRACE[2025-01-04 16:03:12.747][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:12.748][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:12.749][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:12.750][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.750][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:12.752][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:12.753][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.754][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:12.756][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:12.756][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:12.757][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:12.758][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.759][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:12.761][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:12.762][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:12.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:12.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:12.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:12.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:12.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:12.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:12.774][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-01-04 16:03:12.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:12.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:12.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:12.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:12.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:12.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:12.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:12.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:12.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:12.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:12.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:12.791][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:12.792][private$selectFields]
biodb.TRACE[2025-01-04 16:03:12.793][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:12.793][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:12.794][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:12.795][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.796][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:12.798][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:12.799][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.800][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:12.801][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:12.802][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:12.803][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:12.804][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.805][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:12.815][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:12.817][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:12.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:12.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:12.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:12.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:12.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:12.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:12.829][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-01-04 16:03:12.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:12.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:12.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:12.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:12.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:12.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:12.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:12.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:12.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:12.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:12.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:12.846][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:12.847][private$selectFields]
biodb.TRACE[2025-01-04 16:03:12.848][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:12.849][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:12.849][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:12.850][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.851][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:12.853][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:12.854][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.855][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:12.856][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:12.857][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:12.858][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:12.859][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.860][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:12.862][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:12.862][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:12.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:12.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:12.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:12.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:12.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:12.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:12.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:12.874][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-01-04 16:03:12.875][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:03:12.876][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:03:12.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:12.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:12.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:12.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:12.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:12.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:12.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:12.888][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:03:12.891][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:12.892][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:12.893][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-01-04 16:03:13.241][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-01-04 16:03:13.587][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:13.591][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content"
biodb.TRACE[2025-01-04 16:03:13.599][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.request"
biodb.DEBUG[2025-01-04 16:03:13.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:13.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:13.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:13.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:13.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:13.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:13.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:13.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:13.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:13.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:13.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:13.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:13.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:13.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:13.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:13.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:13.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:13.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:13.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:13.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:13.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:13.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:13.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:13.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:13.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:13.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:13.659][private$loadEntries] Creating entries from ids [1]: "47739".
biodb.DEBUG[2025-01-04 16:03:13.660][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:13.662][cch$loadFileContent] Trying to load 1 files from cache: [1]: "47739".
biodb.TRACE[2025-01-04 16:03:13.663][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:13.664][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:13.666][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:13.667][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:13.668][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:13.669][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:13.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:13.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:13.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:13.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:13.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:13.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:13.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:13.681][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.DEBUG[2025-01-04 16:03:13.683][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:13.684][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:13.685][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
biodb.TRACE[2025-01-04 16:03:14.112][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739).
biodb.DEBUG[2025-01-04 16:03:14.461][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:14.463][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.content"
biodb.TRACE[2025-01-04 16:03:14.466][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0dc9c92acc9df5971b3177a6daad90f3.request"
biodb.TRACE[2025-01-04 16:03:14.468][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/47739.xml"
biodb.DEBUG[2025-01-04 16:03:14.480][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:14.482][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:14.483][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:14.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:14.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:14.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:14.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:14.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:14.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:14.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:14.495][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:14.496][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:14.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.498][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:14.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:14.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:14.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:14.502][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:14.503][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:14.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.505][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:14.506][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:14.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:14.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:14.510][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:14.511][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:14.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.512][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:14.513][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:14.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:14.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:14.517][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:14.518][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:14.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.519][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:14.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:14.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:14.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:14.524][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:14.525][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:14.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.527][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:14.528][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:14.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:14.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:14.531][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:14.532][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:14.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.534][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:14.535][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:14.536][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:14.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.538][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:14.539][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:14.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:14.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:14.542][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:14.543][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:14.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.545][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:14.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:14.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:14.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:14.549][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:14.550][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:14.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.552][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:14.553][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:14.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:14.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:14.557][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:14.558][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:14.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.559][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:14.560][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:14.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:14.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:14.564][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:14.565][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:14.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.567][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:14.568][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:14.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:14.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:14.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:14.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:14.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:14.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:14.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:14.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:14.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:14.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:14.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:14.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:14.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:14.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:14.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:14.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:14.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:14.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:14.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:14.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:14.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:14.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:14.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:14.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:14.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:14.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:14.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:14.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:14.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:14.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:14.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:14.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:14.607][self$createEntryFromContent] Accession numbers: 47739.
biodb.TRACE[2025-01-04 16:03:14.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:14.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:14.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:14.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:14.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:14.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:14.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:14.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:14.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:14.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:14.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:14.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:14.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:14.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:14.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:14.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:14.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:14.628][private$loadEntries] Creating entries from ids [1]: "51744".
biodb.DEBUG[2025-01-04 16:03:14.629][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:14.630][cch$loadFileContent] Trying to load 1 files from cache: [1]: "51744".
biodb.TRACE[2025-01-04 16:03:14.631][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:14.637][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:14.638][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:14.639][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:14.641][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:14.642][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:14.644][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:14.645][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:14.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:14.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:14.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:14.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:14.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:14.654][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.DEBUG[2025-01-04 16:03:14.657][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:14.658][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:14.659][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
biodb.TRACE[2025-01-04 16:03:15.027][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744).
biodb.DEBUG[2025-01-04 16:03:15.373][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:15.378][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.content"
biodb.TRACE[2025-01-04 16:03:15.384][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34d89a621633962f5a6b9b09f1ef84ed.request"
biodb.TRACE[2025-01-04 16:03:15.390][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/51744.xml"
biodb.DEBUG[2025-01-04 16:03:15.393][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:15.395][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:15.398][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:15.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:15.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:15.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:15.414][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:15.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:15.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:15.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:15.423][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:15.425][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:15.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.428][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:15.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:15.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:15.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:15.436][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:15.437][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:15.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.440][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:15.441][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:15.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:15.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:15.446][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:15.447][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:15.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.449][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:15.451][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:15.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:15.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:15.455][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:15.456][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:15.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.458][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:15.459][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:15.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:15.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:15.463][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:15.464][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:15.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.465][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:15.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:15.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:15.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:15.470][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:15.471][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:15.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.473][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:15.474][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:15.475][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:15.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.476][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:15.477][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:15.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:15.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:15.481][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:15.482][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:15.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.484][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:15.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:15.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:15.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:15.489][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:15.490][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:15.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.491][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:15.493][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:15.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:15.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:15.496][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:15.497][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:15.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.499][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:15.500][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:15.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:15.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:15.504][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:15.505][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:15.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.506][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:15.507][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:15.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:15.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:15.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:15.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:15.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:15.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:15.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:15.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:15.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:15.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:15.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:15.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:15.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:15.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:15.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:15.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:15.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:15.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:15.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:15.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:15.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:15.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:15.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:15.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:15.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:15.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:15.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:15.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:15.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:15.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:15.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:15.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:15.556][self$createEntryFromContent] Accession numbers: 51744.
biodb.TRACE[2025-01-04 16:03:15.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:15.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:15.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:15.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:15.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:15.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:15.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:15.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:15.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:15.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:15.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:15.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:15.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:15.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:15.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:15.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:15.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:15.577][private$loadEntries] Creating entries from ids [1]: "64473".
biodb.DEBUG[2025-01-04 16:03:15.578][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:15.579][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64473".
biodb.TRACE[2025-01-04 16:03:15.580][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:15.581][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:15.582][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:15.583][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:15.584][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:15.585][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:15.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:15.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:15.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:15.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:15.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:15.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:15.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:15.596][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.DEBUG[2025-01-04 16:03:15.598][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:15.599][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:15.601][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
biodb.TRACE[2025-01-04 16:03:15.970][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473).
biodb.DEBUG[2025-01-04 16:03:16.519][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:16.521][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.content"
biodb.TRACE[2025-01-04 16:03:16.524][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0bc75e6e381d0b772364b3d17c4c0f5e.request"
biodb.TRACE[2025-01-04 16:03:16.526][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64473.xml"
biodb.DEBUG[2025-01-04 16:03:16.527][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:16.528][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:16.529][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:16.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:16.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:16.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:16.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:16.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:16.538][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:16.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:16.540][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:16.541][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:16.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.543][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:16.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:16.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.548][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:16.549][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:16.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.550][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.551][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:16.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:16.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.555][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:16.556][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:16.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.558][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.559][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:16.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:16.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.562][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:16.563][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:16.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.565][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:16.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:16.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.569][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:16.570][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:16.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.572][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:16.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:16.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.577][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:16.578][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:16.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.579][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.581][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:16.582][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:16.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.583][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.584][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:16.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:16.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.588][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:16.589][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:16.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.591][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:16.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:16.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.596][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:16.596][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:16.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.598][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.599][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:16.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:16.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.603][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:16.604][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:16.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.606][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.607][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:16.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:16.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.610][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:16.611][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:16.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.613][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.614][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:16.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:16.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:16.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:16.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:16.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:16.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:16.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:16.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:16.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:16.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:16.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:16.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:16.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:16.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:16.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:16.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:16.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:16.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:16.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:16.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:16.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:16.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:16.663][self$createEntryFromContent] Accession numbers: 64473.
biodb.TRACE[2025-01-04 16:03:16.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:16.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:16.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:16.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:16.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:16.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:16.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:16.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:16.675][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:16.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:16.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:16.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:16.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:16.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:16.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:16.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:16.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:16.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:16.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:16.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:16.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:16.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:16.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:16.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:16.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:16.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:16.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:16.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:16.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:16.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:16.703][private$loadEntries] Creating entries from ids [1]: "75244".
biodb.DEBUG[2025-01-04 16:03:16.704][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:16.705][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75244".
biodb.TRACE[2025-01-04 16:03:16.706][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:16.707][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:16.708][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:16.709][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:16.710][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:16.711][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:16.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:16.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:16.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:16.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:16.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:16.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:16.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:16.722][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.DEBUG[2025-01-04 16:03:16.724][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:16.725][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:16.726][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
biodb.TRACE[2025-01-04 16:03:17.326][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244).
biodb.DEBUG[2025-01-04 16:03:17.837][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:17.841][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.content"
biodb.TRACE[2025-01-04 16:03:17.848][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cae81bf9939177869251c540dee6df85.request"
biodb.TRACE[2025-01-04 16:03:17.853][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75244.xml"
biodb.DEBUG[2025-01-04 16:03:17.856][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:17.859][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:17.861][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:17.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:17.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:17.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:17.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:17.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:17.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:17.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:17.887][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:17.889][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:17.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:17.892][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:17.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:17.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:17.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:17.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:17.900][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:17.902][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:17.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:17.904][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:17.906][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:17.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:17.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:17.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:17.910][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:17.912][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:17.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:17.914][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:17.915][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:17.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:17.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:17.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:17.919][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:17.921][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:17.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:17.922][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:17.924][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:17.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:17.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:17.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:17.928][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:17.937][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:17.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:17.939][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:17.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:17.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:17.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:17.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:17.944][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:17.945][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:17.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:17.947][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:17.948][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:17.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:17.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:17.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:17.951][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:17.952][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:17.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:17.954][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:17.955][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:17.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:17.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:17.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:17.959][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:17.960][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:17.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:17.961][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:17.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:17.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:17.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:17.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:17.966][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:17.967][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:17.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:17.968][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:17.970][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:17.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:17.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:17.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:17.973][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:17.974][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:17.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:17.976][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:17.977][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:17.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:17.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:17.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:17.980][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:17.981][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:17.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:17.983][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:17.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:17.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:17.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:17.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:17.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:17.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:17.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:17.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:17.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:17.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:17.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:17.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:17.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:17.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:17.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:17.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:17.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:17.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:18.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:18.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:18.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:18.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:18.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:18.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:18.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:18.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:18.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:18.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:18.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:18.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:18.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:18.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:18.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:18.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:18.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:18.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:18.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:18.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:18.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:18.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:18.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:18.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:18.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:18.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:18.023][self$createEntryFromContent] Accession numbers: 75244.
biodb.TRACE[2025-01-04 16:03:18.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:18.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:18.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:18.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:18.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:18.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:18.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:18.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:18.031][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:18.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:18.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:18.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:18.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:18.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:18.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:18.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:18.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:18.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:18.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:18.043][private$loadEntries] Creating entries from ids [1]: "75311".
biodb.DEBUG[2025-01-04 16:03:18.044][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:18.045][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75311".
biodb.TRACE[2025-01-04 16:03:18.047][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:18.048][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:18.049][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:18.050][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:18.050][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:18.051][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:18.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:18.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:18.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:18.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:18.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:18.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:18.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:18.063][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.DEBUG[2025-01-04 16:03:18.065][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:18.066][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:18.067][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
biodb.TRACE[2025-01-04 16:03:18.445][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311).
biodb.DEBUG[2025-01-04 16:03:19.252][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:19.256][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.content"
biodb.TRACE[2025-01-04 16:03:19.263][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4e5c0f0d646c796bdaff17cc90a3658d.request"
biodb.TRACE[2025-01-04 16:03:19.269][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75311.xml"
biodb.DEBUG[2025-01-04 16:03:19.272][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:19.274][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:19.277][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:19.280][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:19.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:19.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:19.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:19.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:19.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:19.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:19.314][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:19.315][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:19.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.318][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:19.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:19.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:19.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:19.325][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:19.326][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:19.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.328][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:19.329][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:19.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:19.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:19.334][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:19.335][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:19.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.337][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:19.338][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:19.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:19.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:19.342][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:19.343][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:19.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.344][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:19.346][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:19.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:19.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:19.349][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:19.350][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:19.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.352][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:19.353][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:19.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:19.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:19.356][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:19.357][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:19.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.359][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:19.360][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:19.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:19.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:19.364][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:19.365][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:19.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.366][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:19.367][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:19.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:19.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:19.371][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:19.372][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:19.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.373][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:19.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:19.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:19.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:19.378][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:19.379][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:19.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.381][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:19.382][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:19.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:19.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:19.385][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:19.386][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:19.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.388][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:19.389][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:19.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:19.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:19.393][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:19.393][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:19.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.395][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:19.396][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:19.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:19.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:19.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:19.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:19.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:19.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:19.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:19.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:19.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:19.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:19.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:19.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:19.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:19.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:19.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:19.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:19.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:19.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:19.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:19.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:19.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:19.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:19.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:19.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:19.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:19.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:19.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:19.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:19.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:19.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:19.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:19.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:19.435][self$createEntryFromContent] Accession numbers: 75311.
biodb.TRACE[2025-01-04 16:03:19.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:19.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:19.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:19.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:19.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:19.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:19.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:19.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:19.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:19.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:19.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:19.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:19.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:19.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:19.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:19.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:19.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:19.456][private$loadEntries] Creating entries from ids [1]: "75350".
biodb.DEBUG[2025-01-04 16:03:19.457][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:19.458][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75350".
biodb.TRACE[2025-01-04 16:03:19.459][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:19.460][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:19.461][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:19.462][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:19.463][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:19.464][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:19.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:19.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:19.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:19.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:19.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:19.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:19.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:19.481][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.DEBUG[2025-01-04 16:03:19.484][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:19.485][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:19.486][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
biodb.TRACE[2025-01-04 16:03:19.864][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350).
biodb.DEBUG[2025-01-04 16:03:20.214][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:20.216][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.content"
biodb.TRACE[2025-01-04 16:03:20.219][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37625fe42e340de84bdcc226ef73c285.request"
biodb.TRACE[2025-01-04 16:03:20.221][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75350.xml"
biodb.DEBUG[2025-01-04 16:03:20.222][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:20.223][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:20.224][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:20.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:20.227][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:20.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:20.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:20.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:20.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:20.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:20.236][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:20.237][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:20.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.238][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:20.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:20.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:20.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:20.243][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:20.244][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:20.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.246][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:20.247][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:20.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:20.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:20.250][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:20.251][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:20.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.253][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:20.254][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:20.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:20.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:20.258][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:20.259][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:20.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.260][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:20.261][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:20.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:20.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:20.265][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:20.266][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:20.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.267][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:20.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:20.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:20.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:20.272][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:20.273][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:20.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.275][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:20.276][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:20.277][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:20.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.278][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:20.279][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:20.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:20.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:20.283][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:20.284][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:20.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.285][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:20.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:20.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:20.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:20.290][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:20.291][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:20.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.293][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:20.294][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:20.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:20.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:20.297][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:20.298][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:20.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.300][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:20.301][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:20.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:20.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:20.305][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:20.305][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:20.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.307][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:20.308][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:20.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:20.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:20.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:20.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:20.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:20.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:20.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:20.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:20.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:20.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:20.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:20.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:20.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:20.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:20.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:20.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:20.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:20.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:20.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:20.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:20.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:20.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:20.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:20.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:20.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:20.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:20.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:20.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:20.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:20.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:20.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:20.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:20.348][self$createEntryFromContent] Accession numbers: 75350.
biodb.TRACE[2025-01-04 16:03:20.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:20.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:20.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:20.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:20.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:20.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:20.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:20.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:20.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:20.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:20.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:20.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:20.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:20.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:20.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:20.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:20.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:20.379][private$loadEntries] Creating entries from ids [1]: "87236".
biodb.DEBUG[2025-01-04 16:03:20.380][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:20.381][cch$loadFileContent] Trying to load 1 files from cache: [1]: "87236".
biodb.TRACE[2025-01-04 16:03:20.382][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:20.383][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:20.384][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:20.385][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:20.386][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:20.387][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:20.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:20.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:20.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:20.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:20.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:20.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:20.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:20.399][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.DEBUG[2025-01-04 16:03:20.401][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:20.402][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:20.403][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
biodb.TRACE[2025-01-04 16:03:20.776][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236).
biodb.DEBUG[2025-01-04 16:03:21.122][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:21.124][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.content"
biodb.TRACE[2025-01-04 16:03:21.126][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/668dc6e1fe28fb2b9645ffb56917cb44.request"
biodb.TRACE[2025-01-04 16:03:21.129][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/87236.xml"
biodb.DEBUG[2025-01-04 16:03:21.130][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:21.131][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:21.132][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:21.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:21.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:21.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:21.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:21.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:21.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:21.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:21.144][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:21.145][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:21.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.146][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:21.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:21.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:21.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:21.151][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:21.152][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:21.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.153][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:21.155][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:21.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:21.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:21.158][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:21.159][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:21.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.161][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:21.162][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:21.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:21.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:21.165][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:21.166][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:21.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.168][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:21.169][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:21.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:21.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:21.172][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:21.173][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:21.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.175][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:21.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:21.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:21.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:21.180][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:21.181][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:21.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.182][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:21.183][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:21.184][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:21.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.186][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:21.187][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:21.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:21.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:21.191][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:21.192][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:21.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.193][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:21.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:21.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:21.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:21.198][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:21.199][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:21.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.201][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:21.202][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:21.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:21.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:21.206][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:21.207][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:21.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.208][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:21.209][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:21.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:21.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:21.213][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:21.214][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:21.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.215][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:21.217][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:21.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:21.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:21.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:21.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:21.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:21.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:21.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:21.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:21.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:21.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:21.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:21.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:21.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:21.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:21.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:21.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:21.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:21.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:21.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:21.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:21.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:21.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:21.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:21.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:21.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:21.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:21.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:21.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:21.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:21.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:21.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:21.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:21.265][self$createEntryFromContent] Accession numbers: 87236.
biodb.TRACE[2025-01-04 16:03:21.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:21.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:21.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:21.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:21.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:21.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:21.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:21.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:21.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:21.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:21.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:21.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:21.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:21.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:21.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:21.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:21.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:21.285][private$loadEntries] Creating entries from ids [1]: "132193".
biodb.DEBUG[2025-01-04 16:03:21.286][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:21.288][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132193".
biodb.TRACE[2025-01-04 16:03:21.289][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:21.290][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:21.291][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:21.292][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:21.293][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:21.293][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:21.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:21.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:21.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:21.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:21.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:21.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:21.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:21.305][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.DEBUG[2025-01-04 16:03:21.307][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:21.308][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:21.309][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
biodb.TRACE[2025-01-04 16:03:21.681][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193).
biodb.DEBUG[2025-01-04 16:03:22.037][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:22.041][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.content"
biodb.TRACE[2025-01-04 16:03:22.048][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/485d54e768e8b3a26016a2841d39a83c.request"
biodb.TRACE[2025-01-04 16:03:22.053][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132193.xml"
biodb.DEBUG[2025-01-04 16:03:22.056][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:22.059][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:22.061][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:22.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:22.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:22.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:22.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:22.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:22.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:22.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:22.087][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:22.089][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:22.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.092][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:22.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:22.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:22.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:22.099][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:22.101][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:22.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.103][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:22.105][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:22.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:22.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:22.110][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:22.111][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:22.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.113][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:22.114][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:22.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:22.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:22.118][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:22.119][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:22.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.121][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:22.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:22.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:22.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:22.126][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:22.127][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:22.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.128][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:22.129][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:22.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:22.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:22.133][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:22.134][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:22.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.136][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:22.137][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:22.138][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:22.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.139][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:22.140][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:22.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:22.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:22.144][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:22.145][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:22.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.147][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:22.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:22.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:22.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:22.161][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:22.162][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:22.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.163][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:22.165][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:22.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:22.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:22.168][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:22.169][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:22.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.171][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:22.172][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:22.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:22.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:22.176][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:22.177][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:22.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.178][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:22.179][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:22.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:22.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:22.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:22.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:22.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:22.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:22.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:22.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:22.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:22.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:22.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:22.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:22.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:22.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:22.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:22.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:22.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:22.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:22.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:22.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:22.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:22.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:22.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:22.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:22.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:22.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:22.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:22.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:22.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:22.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:22.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:22.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:22.218][self$createEntryFromContent] Accession numbers: 132193.
biodb.TRACE[2025-01-04 16:03:22.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:22.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:22.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:22.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:22.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:22.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:22.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:22.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:22.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:22.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:22.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:22.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:22.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:22.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:22.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:22.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:22.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:22.239][private$loadEntries] Creating entries from ids [1]: "146002".
biodb.DEBUG[2025-01-04 16:03:22.240][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:22.241][cch$loadFileContent] Trying to load 1 files from cache: [1]: "146002".
biodb.TRACE[2025-01-04 16:03:22.242][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:22.243][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:22.244][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:22.245][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:22.246][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:22.247][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:22.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:22.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:22.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:22.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:22.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:22.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:22.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:22.258][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.DEBUG[2025-01-04 16:03:22.260][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:22.261][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:22.262][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
biodb.TRACE[2025-01-04 16:03:22.659][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002).
biodb.DEBUG[2025-01-04 16:03:23.011][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:23.013][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.content"
biodb.TRACE[2025-01-04 16:03:23.016][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f6f6aad2df3f38cd332b2e82fd62eca2.request"
biodb.TRACE[2025-01-04 16:03:23.018][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/146002.xml"
biodb.DEBUG[2025-01-04 16:03:23.019][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:23.020][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:23.021][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:23.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:23.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:23.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:23.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:23.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:23.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:23.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:23.033][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:23.034][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:23.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.036][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:23.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:23.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:23.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:23.040][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:23.041][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:23.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.043][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:23.044][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:23.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:23.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:23.048][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:23.049][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:23.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.050][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:23.052][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:23.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:23.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:23.064][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:23.065][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:23.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.067][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:23.069][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:23.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:23.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:23.072][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:23.073][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:23.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.075][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:23.076][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:23.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:23.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:23.080][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:23.081][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:23.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.082][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:23.084][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:23.084][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:23.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.086][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:23.087][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:23.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:23.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:23.091][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:23.092][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:23.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.093][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:23.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:23.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:23.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:23.098][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:23.099][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:23.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.101][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:23.102][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:23.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:23.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:23.105][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:23.106][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:23.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.108][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:23.109][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:23.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:23.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:23.113][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:23.114][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:23.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.115][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:23.116][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:23.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:23.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:23.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:23.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:23.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:23.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:23.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:23.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:23.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:23.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:23.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:23.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:23.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:23.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:23.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:23.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:23.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:23.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:23.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:23.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:23.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:23.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:23.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:23.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:23.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:23.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:23.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:23.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:23.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:23.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:23.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:23.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:23.155][self$createEntryFromContent] Accession numbers: 146002.
biodb.TRACE[2025-01-04 16:03:23.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:23.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:23.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:23.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:23.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:23.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:23.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:23.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:23.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:23.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:23.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:23.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:23.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:23.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:23.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:23.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:23.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:23.176][private$loadEntries] Creating entries from ids [1]: "65641".
biodb.DEBUG[2025-01-04 16:03:23.177][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:23.178][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65641".
biodb.TRACE[2025-01-04 16:03:23.180][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:23.181][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:23.182][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:23.183][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:23.183][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:23.184][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:23.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:23.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:23.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:23.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:23.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:23.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:23.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:23.196][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.DEBUG[2025-01-04 16:03:23.199][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:23.200][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:23.201][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
biodb.TRACE[2025-01-04 16:03:23.979][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641).
biodb.DEBUG[2025-01-04 16:03:24.326][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:24.329][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.content"
biodb.TRACE[2025-01-04 16:03:24.332][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cb3af00d6d6a96efc61a93d5105272fc.request"
biodb.TRACE[2025-01-04 16:03:24.334][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65641.xml"
biodb.DEBUG[2025-01-04 16:03:24.335][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:24.336][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:24.337][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:24.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:24.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:24.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:24.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:24.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:24.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:24.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:24.358][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:24.359][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:24.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.360][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:24.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:24.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:24.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:24.365][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:24.366][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:24.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.368][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:24.369][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:24.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:24.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:24.372][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:24.373][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:24.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.375][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:24.376][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:24.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:24.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:24.380][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:24.381][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:24.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.382][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:24.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:24.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:24.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:24.387][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:24.388][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:24.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.390][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:24.391][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:24.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:24.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:24.394][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:24.395][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:24.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.397][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:24.398][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:24.399][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:24.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.401][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:24.402][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:24.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:24.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:24.405][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:24.406][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:24.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.408][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:24.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:24.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:24.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:24.412][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:24.413][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:24.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.415][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:24.416][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:24.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:24.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:24.420][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:24.421][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:24.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.422][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:24.423][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:24.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:24.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:24.427][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:24.428][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:24.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.429][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:24.430][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:24.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:24.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:24.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:24.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:24.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:24.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:24.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:24.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:24.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:24.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:24.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:24.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:24.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:24.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:24.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:24.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:24.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:24.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:24.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:24.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:24.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:24.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:24.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:24.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:24.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:24.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:24.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:24.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:24.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:24.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:24.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:24.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:24.469][self$createEntryFromContent] Accession numbers: 65641.
biodb.TRACE[2025-01-04 16:03:24.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:24.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:24.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:24.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:24.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:24.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:24.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:24.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:24.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:24.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:24.481][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:24.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:24.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:24.487][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:24.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:24.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:24.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:24.490][private$loadEntries] Creating entries from ids [1]: "144071".
biodb.DEBUG[2025-01-04 16:03:24.491][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:24.492][cch$loadFileContent] Trying to load 1 files from cache: [1]: "144071".
biodb.TRACE[2025-01-04 16:03:24.494][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:24.495][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:24.496][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:24.501][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:24.502][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:24.503][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:24.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:24.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:24.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:24.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:24.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:24.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:24.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:24.515][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.DEBUG[2025-01-04 16:03:24.517][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:24.518][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:24.520][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
biodb.TRACE[2025-01-04 16:03:24.874][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071).
biodb.DEBUG[2025-01-04 16:03:25.217][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:25.219][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.content"
biodb.TRACE[2025-01-04 16:03:25.222][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/147c6b10a8e09e725fbbb250103f039d.request"
biodb.TRACE[2025-01-04 16:03:25.224][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/144071.xml"
biodb.DEBUG[2025-01-04 16:03:25.225][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:25.226][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:25.227][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:25.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:25.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:25.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:25.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:25.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:25.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:25.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:25.239][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:25.240][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:25.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.241][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:25.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:25.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.246][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:25.248][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:25.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.250][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.251][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:25.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:25.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.256][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:25.257][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:25.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.259][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.260][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:25.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:25.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.264][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:25.265][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:25.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.267][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:25.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:25.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.272][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:25.273][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:25.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.274][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:25.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:25.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.279][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:25.280][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:25.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.282][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.283][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:25.284][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.286][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.287][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:25.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.290][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:25.291][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:25.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.293][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:25.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:25.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.297][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:25.298][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:25.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.300][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.301][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:25.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:25.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.305][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:25.306][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:25.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.307][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.308][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:25.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:25.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.312][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:25.313][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:25.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.315][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.316][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:25.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:25.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:25.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:25.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:25.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:25.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:25.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:25.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:25.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:25.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:25.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:25.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:25.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:25.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:25.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:25.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:25.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:25.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:25.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:25.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:25.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:25.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:25.364][self$createEntryFromContent] Accession numbers: 144071.
biodb.TRACE[2025-01-04 16:03:25.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:25.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:25.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:25.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:25.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:25.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:25.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:25.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:25.385][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:25.395][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:25.396][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:25.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:25.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:25.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:25.402][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:25.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:25.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:25.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:25.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:25.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:25.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:25.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:25.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:25.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:25.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:25.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:25.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:25.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:25.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:25.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:25.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:25.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:25.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:25.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:25.454][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:25.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:25.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:25.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:25.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:25.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:25.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:25.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:25.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:25.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:25.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:25.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:25.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:25.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:25.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:25.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:25.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:25.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:25.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:25.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:25.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:25.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:25.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:25.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:25.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:25.500][private$loadEntries] Creating entries from ids [1]: "168650".
biodb.DEBUG[2025-01-04 16:03:25.501][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:25.503][cch$loadFileContent] Trying to load 1 files from cache: [1]: "168650".
biodb.TRACE[2025-01-04 16:03:25.504][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:25.505][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:25.506][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:25.511][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:25.512][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:25.513][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:25.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:25.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:25.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:25.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:25.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:25.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:25.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:25.525][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.DEBUG[2025-01-04 16:03:25.527][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:25.528][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:25.530][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
biodb.TRACE[2025-01-04 16:03:25.926][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650).
biodb.DEBUG[2025-01-04 16:03:26.284][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:26.286][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.content"
biodb.TRACE[2025-01-04 16:03:26.289][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fbd7acd341e86313aeb547b3d6d3201b.request"
biodb.TRACE[2025-01-04 16:03:26.291][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/168650.xml"
biodb.DEBUG[2025-01-04 16:03:26.292][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:26.293][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:26.294][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:26.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:26.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:26.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:26.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:26.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:26.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:26.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:26.306][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:26.307][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:26.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.308][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:26.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:26.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.313][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:26.314][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:26.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.316][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.317][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:26.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:26.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.320][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:26.321][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:26.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.323][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.324][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:26.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:26.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.328][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:26.329][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:26.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.330][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:26.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:26.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.335][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:26.336][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:26.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.338][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.339][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:26.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:26.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.342][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:26.343][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:26.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.345][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.346][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:26.347][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:26.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.349][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.350][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:26.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:26.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.353][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:26.354][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:26.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.356][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:26.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:26.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.361][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:26.361][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:26.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.363][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.364][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:26.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:26.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.368][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:26.369][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:26.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.370][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.372][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:26.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:26.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.375][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:26.376][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:26.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.378][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.379][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:26.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:26.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:26.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:26.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:26.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:26.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:26.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:26.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:26.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:26.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:26.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:26.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:26.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:26.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:26.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:26.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:26.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:26.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:26.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:26.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:26.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:26.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:26.428][self$createEntryFromContent] Accession numbers: 168650.
biodb.TRACE[2025-01-04 16:03:26.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:26.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:26.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:26.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:26.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:26.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:26.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:26.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:26.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:26.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:26.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:26.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:26.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:26.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:26.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:26.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:26.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:26.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:26.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:26.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:26.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:26.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:26.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:26.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:26.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:26.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:26.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:26.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:26.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:26.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:26.468][private$loadEntries] Creating entries from ids [1]: "169305".
biodb.DEBUG[2025-01-04 16:03:26.469][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:26.470][cch$loadFileContent] Trying to load 1 files from cache: [1]: "169305".
biodb.TRACE[2025-01-04 16:03:26.471][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:26.472][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:26.473][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:26.474][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:26.475][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:26.476][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:26.478][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:26.479][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:26.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:26.484][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:26.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:26.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:26.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:26.487][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.DEBUG[2025-01-04 16:03:26.489][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:26.490][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:26.491][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
biodb.TRACE[2025-01-04 16:03:26.859][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305).
biodb.DEBUG[2025-01-04 16:03:27.203][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:27.208][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.content"
biodb.TRACE[2025-01-04 16:03:27.215][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5eab934e4cfb5514f373385a6170c282.request"
biodb.TRACE[2025-01-04 16:03:27.220][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/169305.xml"
biodb.DEBUG[2025-01-04 16:03:27.223][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:27.226][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:27.228][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:27.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:27.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:27.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:27.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:27.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:27.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:27.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:27.254][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:27.256][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:27.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.259][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:27.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:27.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:27.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:27.267][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:27.269][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:27.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.271][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:27.273][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:27.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:27.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:27.278][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:27.279][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:27.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.281][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:27.283][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:27.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:27.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:27.288][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:27.289][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:27.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.291][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:27.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:27.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:27.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:27.296][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:27.297][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:27.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.299][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:27.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:27.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:27.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:27.304][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:27.305][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:27.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.307][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:27.308][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:27.309][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:27.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.311][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:27.312][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:27.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:27.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:27.316][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:27.317][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:27.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.319][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:27.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:27.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:27.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:27.324][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:27.337][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:27.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.340][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:27.341][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:27.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:27.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:27.345][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:27.347][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:27.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.348][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:27.350][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:27.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:27.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:27.353][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:27.354][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:27.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.356][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:27.357][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:27.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:27.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:27.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:27.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:27.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:27.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:27.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:27.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:27.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:27.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:27.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:27.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:27.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:27.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:27.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:27.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:27.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:27.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:27.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:27.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:27.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:27.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:27.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:27.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:27.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:27.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:27.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:27.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:27.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:27.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:27.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:27.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:27.399][self$createEntryFromContent] Accession numbers: 169305.
biodb.TRACE[2025-01-04 16:03:27.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:27.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:27.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:27.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:27.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:27.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:27.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:27.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:27.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:27.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:27.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:27.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:27.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:27.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:27.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:27.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:27.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:27.421][private$loadEntries] Creating entries from ids [1]: "176869".
biodb.DEBUG[2025-01-04 16:03:27.422][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:27.423][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176869".
biodb.TRACE[2025-01-04 16:03:27.425][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:27.426][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:27.427][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:27.428][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:27.429][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:27.430][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:27.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:27.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:27.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:27.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:27.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:27.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:27.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:27.442][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.DEBUG[2025-01-04 16:03:27.445][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:27.445][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:27.447][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
biodb.TRACE[2025-01-04 16:03:28.037][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869).
biodb.DEBUG[2025-01-04 16:03:28.382][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:28.384][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.content"
biodb.TRACE[2025-01-04 16:03:28.387][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2c477fa42863c662724815d047e8c32.request"
biodb.TRACE[2025-01-04 16:03:28.390][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176869.xml"
biodb.DEBUG[2025-01-04 16:03:28.391][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:28.392][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:28.393][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:28.395][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:28.396][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:28.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:28.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:28.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:28.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:28.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:28.405][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:28.406][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:28.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.408][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:28.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:28.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:28.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:28.413][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:28.414][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:28.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.416][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:28.417][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:28.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:28.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:28.421][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:28.422][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:28.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.423][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:28.425][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:28.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:28.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:28.428][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:28.429][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:28.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.441][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:28.443][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:28.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:28.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:28.447][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:28.448][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:28.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.449][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:28.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:28.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:28.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:28.454][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:28.455][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:28.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.457][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:28.458][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:28.459][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:28.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.461][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:28.462][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:28.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:28.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:28.465][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:28.466][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:28.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.468][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:28.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:28.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:28.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:28.472][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:28.473][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:28.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.475][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:28.476][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:28.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:28.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:28.480][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:28.481][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:28.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.482][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:28.483][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:28.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:28.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:28.487][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:28.488][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:28.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.490][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:28.491][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:28.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:28.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:28.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:28.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:28.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:28.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:28.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:28.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:28.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:28.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:28.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:28.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:28.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:28.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:28.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:28.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:28.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:28.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:28.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:28.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:28.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:28.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:28.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:28.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:28.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:28.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:28.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:28.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:28.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:28.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:28.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:28.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:28.529][self$createEntryFromContent] Accession numbers: 176869.
biodb.TRACE[2025-01-04 16:03:28.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:28.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:28.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:28.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:28.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:28.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:28.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:28.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:28.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:28.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:28.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:28.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:28.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:28.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:28.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:28.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:28.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:28.550][private$loadEntries] Creating entries from ids [1]: "185696".
biodb.DEBUG[2025-01-04 16:03:28.551][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:28.552][cch$loadFileContent] Trying to load 1 files from cache: [1]: "185696".
biodb.TRACE[2025-01-04 16:03:28.553][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:28.554][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:28.555][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:28.556][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:28.557][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:28.558][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:28.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:28.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:28.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:28.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:28.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:28.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:28.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:28.570][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.DEBUG[2025-01-04 16:03:28.572][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:28.573][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:28.574][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
biodb.TRACE[2025-01-04 16:03:28.953][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696).
biodb.DEBUG[2025-01-04 16:03:29.300][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:29.304][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.content"
biodb.TRACE[2025-01-04 16:03:29.311][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/030ac759c83231dbd7b7d6c83788888c.request"
biodb.TRACE[2025-01-04 16:03:29.316][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/185696.xml"
biodb.DEBUG[2025-01-04 16:03:29.319][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:29.322][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:29.324][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:29.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:29.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:29.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:29.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:29.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:29.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:29.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:29.361][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:29.362][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:29.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.365][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:29.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:29.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:29.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:29.371][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:29.373][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:29.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.375][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:29.376][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:29.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:29.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:29.381][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:29.382][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:29.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.384][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:29.385][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:29.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:29.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:29.389][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:29.390][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:29.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.391][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:29.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:29.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:29.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:29.396][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:29.397][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:29.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.399][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:29.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:29.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:29.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:29.403][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:29.404][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:29.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.406][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:29.407][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:29.408][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:29.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.410][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:29.411][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:29.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:29.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:29.414][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:29.415][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:29.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.417][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:29.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:29.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:29.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:29.421][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:29.422][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:29.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.424][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:29.425][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:29.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:29.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:29.429][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:29.430][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:29.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.431][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:29.432][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:29.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:29.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:29.436][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:29.437][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:29.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.439][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:29.440][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:29.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:29.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:29.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:29.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:29.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:29.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:29.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:29.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:29.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:29.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:29.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:29.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:29.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:29.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:29.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:29.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:29.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:29.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:29.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:29.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:29.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:29.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:29.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:29.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:29.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:29.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:29.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:29.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:29.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:29.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:29.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:29.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:29.479][self$createEntryFromContent] Accession numbers: 185696.
biodb.TRACE[2025-01-04 16:03:29.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:29.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:29.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:29.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:29.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:29.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:29.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:29.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:29.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:29.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:29.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:29.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:29.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:29.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:29.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:29.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:29.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:29.499][private$loadEntries] Creating entries from ids [1]: "190762".
biodb.DEBUG[2025-01-04 16:03:29.500][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:29.502][cch$loadFileContent] Trying to load 1 files from cache: [1]: "190762".
biodb.TRACE[2025-01-04 16:03:29.503][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:29.504][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:29.512][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:29.513][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:29.514][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:29.515][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:29.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:29.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:29.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:29.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:29.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:29.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:29.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:29.527][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.DEBUG[2025-01-04 16:03:29.530][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:29.531][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:29.532][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
biodb.TRACE[2025-01-04 16:03:29.902][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762).
biodb.DEBUG[2025-01-04 16:03:30.248][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:30.250][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.content"
biodb.TRACE[2025-01-04 16:03:30.253][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fa9da4de7d7dc0d4458ab1ff7bbbbda0.request"
biodb.TRACE[2025-01-04 16:03:30.255][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/190762.xml"
biodb.DEBUG[2025-01-04 16:03:30.256][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:30.257][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:30.258][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:30.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:30.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:30.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:30.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:30.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:30.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:30.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:30.270][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:30.271][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:30.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.273][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:30.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:30.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:30.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:30.277][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:30.278][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:30.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.280][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:30.281][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:30.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:30.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:30.284][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:30.285][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:30.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.287][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:30.288][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:30.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:30.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:30.292][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:30.293][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:30.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.294][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:30.296][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:30.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:30.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:30.299][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:30.300][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:30.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.302][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:30.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:30.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:30.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:30.306][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:30.307][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:30.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.309][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:30.310][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:30.311][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:30.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.313][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:30.314][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:30.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:30.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:30.317][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:30.318][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:30.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.320][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:30.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:30.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:30.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:30.324][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:30.325][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:30.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.327][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:30.328][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:30.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:30.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:30.332][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:30.333][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:30.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.334][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:30.335][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:30.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:30.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:30.339][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:30.340][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:30.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.342][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:30.343][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:30.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:30.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:30.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:30.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:30.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:30.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:30.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:30.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:30.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:30.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:30.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:30.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:30.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:30.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:30.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:30.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:30.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:30.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:30.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:30.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:30.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:30.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:30.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:30.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:30.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:30.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:30.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:30.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:30.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:30.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:30.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:30.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:30.392][self$createEntryFromContent] Accession numbers: 190762.
biodb.TRACE[2025-01-04 16:03:30.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:30.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:30.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:30.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:30.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:30.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:30.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:30.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:30.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:30.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:30.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:30.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:30.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:30.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:30.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:30.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:30.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:30.412][private$loadEntries] Creating entries from ids [1]: "193176".
biodb.DEBUG[2025-01-04 16:03:30.413][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:30.415][cch$loadFileContent] Trying to load 1 files from cache: [1]: "193176".
biodb.TRACE[2025-01-04 16:03:30.416][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:30.417][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:30.418][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:30.419][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:30.420][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:30.421][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:30.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:30.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:30.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:30.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:30.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:30.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:30.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:30.432][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.DEBUG[2025-01-04 16:03:30.434][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:30.435][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:30.436][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
biodb.TRACE[2025-01-04 16:03:30.828][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176).
biodb.DEBUG[2025-01-04 16:03:31.182][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:31.186][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.content"
biodb.TRACE[2025-01-04 16:03:31.192][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/343c078fd7b00f04bd71e6f2aebb6ed3.request"
biodb.TRACE[2025-01-04 16:03:31.196][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/193176.xml"
biodb.DEBUG[2025-01-04 16:03:31.198][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:31.200][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:31.202][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:31.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:31.207][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:31.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:31.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:31.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:31.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:31.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:31.225][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:31.227][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:31.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.230][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:31.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:31.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:31.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:31.237][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:31.238][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:31.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.241][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:31.242][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:31.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:31.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:31.247][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:31.249][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:31.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.251][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:31.252][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:31.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:31.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:31.256][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:31.258][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:31.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.259][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:31.261][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:31.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:31.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:31.265][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:31.266][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:31.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.267][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:31.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:31.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:31.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:31.272][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:31.273][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:31.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.275][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:31.276][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:31.277][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:31.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.279][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:31.280][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:31.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:31.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:31.284][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:31.286][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:31.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.287][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:31.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:31.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:31.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:31.292][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:31.293][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:31.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.295][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:31.297][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:31.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:31.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:31.300][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:31.301][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:31.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.303][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:31.304][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:31.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:31.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:31.308][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:31.309][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:31.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.311][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:31.312][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:31.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:31.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:31.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:31.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:31.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:31.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:31.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:31.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:31.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:31.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:31.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:31.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:31.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:31.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:31.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:31.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:31.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:31.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:31.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:31.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:31.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:31.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:31.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:31.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:31.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:31.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:31.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:31.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:31.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:31.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:31.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:31.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:31.367][self$createEntryFromContent] Accession numbers: 193176.
biodb.TRACE[2025-01-04 16:03:31.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:31.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:31.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:31.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:31.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:31.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:31.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:31.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:31.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:31.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:31.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:31.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:31.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:31.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:31.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:31.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:31.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:31.389][private$loadEntries] Creating entries from ids [1]: "196395".
biodb.DEBUG[2025-01-04 16:03:31.390][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:31.392][cch$loadFileContent] Trying to load 1 files from cache: [1]: "196395".
biodb.TRACE[2025-01-04 16:03:31.393][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:31.394][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:31.395][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:31.396][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:31.397][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:31.398][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:31.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:31.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:31.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:31.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:31.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:31.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:31.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:31.410][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
biodb.DEBUG[2025-01-04 16:03:31.413][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:31.414][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:31.415][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
biodb.TRACE[2025-01-04 16:03:31.797][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395).
biodb.DEBUG[2025-01-04 16:03:32.150][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:32.152][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73421bc681b7c5ac1a6297ef414ac513.content"
biodb.TRACE[2025-01-04 16:03:32.155][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/73421bc681b7c5ac1a6297ef414ac513.request"
biodb.TRACE[2025-01-04 16:03:32.157][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/196395.xml"
biodb.DEBUG[2025-01-04 16:03:32.159][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:32.160][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:32.161][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:32.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:32.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:32.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:32.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:32.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:32.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:32.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:32.173][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:32.174][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:32.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.175][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:32.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:32.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.180][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:32.181][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:32.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.183][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.184][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:32.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:32.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.188][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:32.189][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:32.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.191][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.192][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:32.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:32.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.196][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:32.197][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:32.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.198][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:32.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:32.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.203][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:32.204][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:32.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.206][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:32.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:32.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.210][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:32.211][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:32.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.213][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.214][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:32.215][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.217][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.218][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:32.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.233][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:32.234][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:32.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.236][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:32.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:32.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.241][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:32.242][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:32.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.244][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.245][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:32.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:32.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.249][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:32.250][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:32.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.252][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.253][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:32.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:32.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.256][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:32.257][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:32.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.259][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.260][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:32.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:32.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:32.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:32.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:32.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:32.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:32.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:32.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:32.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:32.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:32.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:32.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:32.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:32.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:32.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:32.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:32.299][self$createEntryFromContent] Accession numbers: 196395.
biodb.TRACE[2025-01-04 16:03:32.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.307][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:32.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:32.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:32.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:32.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:32.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:32.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:32.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:32.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.323][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:32.330][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:03:32.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:32.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:32.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:32.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:32.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:32.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:32.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:32.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.347][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:32.348][private$selectFields]
biodb.TRACE[2025-01-04 16:03:32.349][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:32.350][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:32.351][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:32.352][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.353][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.354][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.355][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.356][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.358][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.359][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:32.360][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:32.361][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.361][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.363][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.364][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:32.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.376][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-01-04 16:03:32.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:32.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:32.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:32.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:32.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:32.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:32.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:32.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.399][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:32.400][private$selectFields]
biodb.TRACE[2025-01-04 16:03:32.401][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:32.402][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:32.403][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:32.403][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.404][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.406][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.407][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.408][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.409][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.410][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:32.411][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:32.412][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.413][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.415][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.416][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:32.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.427][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-01-04 16:03:32.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:32.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:32.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:32.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:32.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:32.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:32.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:32.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.444][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:32.445][private$selectFields]
biodb.TRACE[2025-01-04 16:03:32.446][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:32.447][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:32.447][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:32.448][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.449][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.451][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.452][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.453][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.454][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.455][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:32.456][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:32.457][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.458][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.459][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.460][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:32.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.472][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-01-04 16:03:32.473][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:03:32.474][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:03:32.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:32.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:32.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:32.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:32.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:32.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:32.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:32.500][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:03:32.503][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:03:32.504][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ebf8c17fa19fb0caf99d83ca8441a2ac".
biodb.TRACE[2025-01-04 16:03:32.505][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:03:32.507][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ebf8c17fa19fb0caf99d83ca8441a2ac.content".
biodb.DEBUG[2025-01-04 16:03:32.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:32.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:32.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:32.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:32.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:32.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:32.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:32.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:32.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:32.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:32.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:32.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:32.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:32.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:32.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:32.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:32.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:32.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:32.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:32.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:32.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:32.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:32.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:32.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:32.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:32.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:32.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:32.581][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:32.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:32.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:32.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:32.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:32.595][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:03:32.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:32.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:32.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:32.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:32.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:32.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:32.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:32.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.612][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:32.613][private$selectFields]
biodb.TRACE[2025-01-04 16:03:32.614][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:32.615][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:32.615][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:32.616][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.617][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.619][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.620][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.621][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.622][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.623][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:32.624][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:32.625][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.626][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.628][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.628][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:32.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.640][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-01-04 16:03:32.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:32.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:32.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:32.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:32.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:32.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:32.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:32.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.657][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:32.658][private$selectFields]
biodb.TRACE[2025-01-04 16:03:32.659][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:32.660][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:32.660][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:32.661][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.662][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.664][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.665][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.666][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.668][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.668][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:32.669][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:32.670][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.671][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.673][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.674][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:32.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.686][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2025-01-04 16:03:32.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:32.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:32.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:32.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:32.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:32.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:32.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:32.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.709][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:32.709][private$selectFields]
biodb.TRACE[2025-01-04 16:03:32.710][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:32.711][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:32.712][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:32.713][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.714][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.715][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.716][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.717][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.719][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.720][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:32.721][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:32.722][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.723][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.724][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.725][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:32.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.737][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2025-01-04 16:03:32.738][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:03:32.739][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:03:32.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:32.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:32.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:32.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:32.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:32.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:32.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:32.751][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:03:32.753][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:03:32.755][cch$loadFileContent] Trying to load 1 files from cache: [1]: "152225e020c3e5947a0f5a90f021cee7".
biodb.TRACE[2025-01-04 16:03:32.756][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:03:32.757][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/152225e020c3e5947a0f5a90f021cee7.content".
biodb.DEBUG[2025-01-04 16:03:32.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:32.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:32.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:32.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:32.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:32.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:32.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:32.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:32.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:32.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:32.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:32.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:32.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:32.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:32.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:32.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:32.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:32.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:32.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:32.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:32.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:32.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:32.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:32.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:32.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:32.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:32.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:32.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:32.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:32.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:32.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:32.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:32.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:32.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:32.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:32.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:32.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:32.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:32.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:32.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:32.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:32.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:32.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:32.870][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:32.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:32.871][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:32.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:32.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:32.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:32.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:32.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:32.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:32.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:32.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:32.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:32.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:32.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:32.903][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:03:32.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:32.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:32.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:32.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:32.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:32.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:32.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:32.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.920][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:32.921][private$selectFields]
biodb.TRACE[2025-01-04 16:03:32.922][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:32.922][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:32.923][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:32.924][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.925][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.927][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.928][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.929][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.930][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.931][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:32.932][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:32.933][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.934][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.935][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.936][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:32.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.948][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2025-01-04 16:03:32.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:32.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:32.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:32.954][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:32.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:32.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:32.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:32.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.965][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:32.966][private$selectFields]
biodb.TRACE[2025-01-04 16:03:32.967][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:32.968][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:32.968][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:32.969][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.970][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.972][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.973][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.974][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.976][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.976][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:32.977][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:32.978][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.979][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.981][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.982][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:32.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:32.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:32.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:32.994][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2025-01-04 16:03:32.999][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:33.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.016][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.017][private$selectFields]
biodb.TRACE[2025-01-04 16:03:33.018][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:33.019][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:33.020][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.021][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.022][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.023][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.024][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.025][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.027][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.028][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.028][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.029][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.032][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.033][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:33.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.044][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2025-01-04 16:03:33.045][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:03:33.046][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:03:33.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:33.058][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:03:33.061][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:03:33.062][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9686ce9c957a368dd8f5b4cc9c5b15b3".
biodb.TRACE[2025-01-04 16:03:33.063][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:03:33.064][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9686ce9c957a368dd8f5b4cc9c5b15b3.content".
biodb.DEBUG[2025-01-04 16:03:33.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:33.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:33.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:33.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:33.105][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:03:33.108][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:03:33.109][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5d833e77a1be58060d0c3916a1e1b293".
biodb.TRACE[2025-01-04 16:03:33.110][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:03:33.111][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5d833e77a1be58060d0c3916a1e1b293.content".
biodb.DEBUG[2025-01-04 16:03:33.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:33.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:33.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:33.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:33.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:33.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:33.179][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:03:33.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:33.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.196][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.196][private$selectFields]
biodb.TRACE[2025-01-04 16:03:33.197][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:33.198][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:33.199][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.200][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.201][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.202][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.203][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.204][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.206][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.207][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.208][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.209][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.209][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.211][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.212][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:33.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.224][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2025-01-04 16:03:33.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:33.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.240][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.241][private$selectFields]
biodb.TRACE[2025-01-04 16:03:33.242][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:33.243][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:33.244][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.244][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.245][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.247][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.248][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.249][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.250][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.251][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.252][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.253][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.254][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.256][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.256][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:33.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.268][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2025-01-04 16:03:33.269][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:33.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.285][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.286][private$selectFields]
biodb.TRACE[2025-01-04 16:03:33.287][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:33.288][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:33.289][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.290][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.291][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.292][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.293][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.294][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.296][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.297][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.298][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.299][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.300][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.306][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.307][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:33.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.320][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2025-01-04 16:03:33.321][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:03:33.321][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:03:33.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.338][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:33.348][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:03:33.350][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:03:33.351][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-01-04 16:03:33.353][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:03:33.354][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-01-04 16:03:33.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:33.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:33.375][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:03:33.378][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:03:33.379][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-01-04 16:03:33.380][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:03:33.382][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-01-04 16:03:33.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.385][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:33.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:33.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:33.412][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:33.422][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:03:33.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:33.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.440][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.441][private$selectFields]
biodb.TRACE[2025-01-04 16:03:33.442][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:33.443][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:33.443][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.444][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.445][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.447][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.448][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.449][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.451][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.451][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.452][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.458][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.459][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.462][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.463][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:33.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.475][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-01-04 16:03:33.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:33.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.492][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.493][private$selectFields]
biodb.TRACE[2025-01-04 16:03:33.494][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:33.494][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:33.495][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.496][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.497][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.499][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.500][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.501][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.502][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.503][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.504][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.505][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.506][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.508][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.508][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:33.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.520][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-01-04 16:03:33.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.528][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:33.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.537][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.538][private$selectFields]
biodb.TRACE[2025-01-04 16:03:33.539][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:33.540][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:33.541][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.542][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.542][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.544][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.545][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.546][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.548][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.549][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.549][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.550][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.551][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.553][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.554][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:33.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.566][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-01-04 16:03:33.566][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:03:33.567][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:03:33.569][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.570][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:33.580][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:03:33.583][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:03:33.584][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-01-04 16:03:33.585][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:03:33.586][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-01-04 16:03:33.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:33.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:33.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:33.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:33.634][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:03:33.637][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:03:33.638][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-01-04 16:03:33.639][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:03:33.640][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-01-04 16:03:33.643][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:33.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:33.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:33.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:33.681][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:33.690][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:33.700][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:03:33.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:33.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.718][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.718][private$selectFields]
biodb.TRACE[2025-01-04 16:03:33.719][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:33.720][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:33.721][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.722][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.723][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.724][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.725][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.726][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.728][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.729][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.730][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.731][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.732][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.733][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.734][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:33.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.746][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-01-04 16:03:33.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:33.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.769][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.770][private$selectFields]
biodb.TRACE[2025-01-04 16:03:33.771][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:33.772][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:33.773][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.774][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.775][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.777][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.778][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.779][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.781][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.782][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.782][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.783][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.784][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.786][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.787][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:33.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.799][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-01-04 16:03:33.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.805][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:33.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.816][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.817][private$selectFields]
biodb.TRACE[2025-01-04 16:03:33.817][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:33.818][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:33.819][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.820][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.821][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.823][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.823][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.824][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.826][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.827][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.828][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:33.829][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.830][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.831][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.832][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:33.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:33.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.844][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-01-04 16:03:33.845][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:03:33.845][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:03:33.847][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:33.857][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:03:33.860][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:03:33.861][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-01-04 16:03:33.862][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:03:33.864][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-01-04 16:03:33.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:33.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:33.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:33.894][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:33.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:33.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:33.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:33.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:33.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:33.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:33.969][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.970][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.974][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:33.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:33.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:33.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:33.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:33.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:33.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:33.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:33.995][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:33.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:33.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:33.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:33.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:34.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:34.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:34.027][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:03:34.029][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:03:34.031][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-01-04 16:03:34.032][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:03:34.033][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-01-04 16:03:34.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:34.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:34.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:34.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:34.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.081][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:34.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:34.099][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:03:34.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.101][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:34.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.116][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.117][private$selectFields]
biodb.TRACE[2025-01-04 16:03:34.118][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:34.119][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:34.120][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.120][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.121][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.123][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.124][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.125][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.126][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.127][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.128][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.129][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.130][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.132][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.132][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:34.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.144][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-01-04 16:03:34.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:34.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.161][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.161][private$selectFields]
biodb.TRACE[2025-01-04 16:03:34.162][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:34.163][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:34.164][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.165][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.166][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.167][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.168][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.169][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.171][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.172][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.173][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.173][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.174][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.176][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.177][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:34.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.189][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-01-04 16:03:34.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:34.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.206][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.207][private$selectFields]
biodb.TRACE[2025-01-04 16:03:34.207][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:34.208][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:34.209][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.210][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.211][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.213][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.213][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.214][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.221][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.222][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.223][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.224][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.225][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.227][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.228][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:34.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.240][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-01-04 16:03:34.240][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:03:34.241][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:03:34.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:34.267][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:03:34.270][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:03:34.271][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2b6f29bb7a7663ff23fb5e7dcae5c27f".
biodb.TRACE[2025-01-04 16:03:34.272][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:03:34.273][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2b6f29bb7a7663ff23fb5e7dcae5c27f.content".
biodb.DEBUG[2025-01-04 16:03:34.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:34.284][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:34.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:34.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:34.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:34.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:34.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:34.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:34.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.359][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:34.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:34.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:34.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:34.397][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:03:34.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.405][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:34.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.414][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.415][private$selectFields]
biodb.TRACE[2025-01-04 16:03:34.415][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:34.416][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:34.417][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.418][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.419][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.421][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.421][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.422][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.424][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.425][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.426][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.427][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.427][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.429][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.430][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:34.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.442][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-01-04 16:03:34.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:34.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.458][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.459][private$selectFields]
biodb.TRACE[2025-01-04 16:03:34.460][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:34.461][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:34.461][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.462][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.463][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.465][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.466][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.467][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.468][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.469][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.470][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.471][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.472][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.474][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.474][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:34.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.486][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2025-01-04 16:03:34.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:34.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.503][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.504][private$selectFields]
biodb.TRACE[2025-01-04 16:03:34.505][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:34.506][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:34.507][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.508][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.508][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.510][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.511][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.512][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.514][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.519][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.520][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.521][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.523][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.525][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.526][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:34.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.538][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2025-01-04 16:03:34.539][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:03:34.540][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:03:34.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:34.552][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:03:34.555][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:03:34.556][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9a13652ab89a613a3b0e10d3b6cb10a0".
biodb.TRACE[2025-01-04 16:03:34.557][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:03:34.558][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9a13652ab89a613a3b0e10d3b6cb10a0.content".
biodb.DEBUG[2025-01-04 16:03:34.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:34.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:34.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:34.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:34.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:34.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:34.620][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:03:34.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:34.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.637][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.638][private$selectFields]
biodb.TRACE[2025-01-04 16:03:34.639][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:34.640][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:34.641][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.642][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.643][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.644][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.645][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.646][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.648][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.649][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.650][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.651][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.652][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.653][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.654][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:34.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.671][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-01-04 16:03:34.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.680][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:34.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.689][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.690][private$selectFields]
biodb.TRACE[2025-01-04 16:03:34.691][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:34.692][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:34.692][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.693][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.694][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.696][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.697][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.698][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.699][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.700][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.701][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.702][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.703][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.705][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.705][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:34.706][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.717][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-01-04 16:03:34.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:34.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.734][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.735][private$selectFields]
biodb.TRACE[2025-01-04 16:03:34.735][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:34.736][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:34.737][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.738][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.739][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.741][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.742][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.742][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.744][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.745][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.746][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:34.747][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.748][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.749][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.750][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:34.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:34.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.762][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-01-04 16:03:34.763][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:03:34.763][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:03:34.765][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:34.775][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:03:34.778][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:03:34.779][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a985300ab8a01d49254fbf993ad91279".
biodb.TRACE[2025-01-04 16:03:34.780][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:03:34.781][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a985300ab8a01d49254fbf993ad91279.content".
biodb.DEBUG[2025-01-04 16:03:34.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:34.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:34.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:34.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:34.829][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.836][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:34.838][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:34.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:34.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:34.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.874][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:34.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:34.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:34.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:34.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:34.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:34.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:34.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:34.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:34.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:34.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:34.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:34.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:34.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:34.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:34.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:34.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:34.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:34.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:34.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:35.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:35.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:35.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:35.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:35.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:35.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:35.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:35.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:35.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:35.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:35.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:35.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:35.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:35.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:35.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:35.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:35.166][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:35.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:35.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:35.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:35.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:35.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:35.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:35.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:35.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:35.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:35.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:35.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:35.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:35.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:35.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:35.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:35.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:35.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:35.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:35.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:35.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:35.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:35.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:35.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:35.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:35.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:35.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:35.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:35.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:35.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:35.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:35.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:35.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:35.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:35.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:35.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:35.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:35.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:35.256][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:35.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:35.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:35.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:35.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:35.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:35.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:35.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:35.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:35.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:35.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:35.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:35.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:35.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:35.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:35.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:35.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:35.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:35.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:35.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:35.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:35.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:35.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:35.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:35.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:35.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:35.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:35.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:35.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:35.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:35.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:35.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:35.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:35.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:35.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:35.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:35.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:35.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:35.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:35.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:35.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:35.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:35.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:35.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:35.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:35.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:35.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:35.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:35.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:35.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:35.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:35.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:35.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:35.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:35.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:35.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:35.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:35.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:35.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:35.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:35.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:35.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:35.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:35.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:35.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:35.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:35.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:35.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:35.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:35.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:35.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:35.429][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:35.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:35.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:35.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:35.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:35.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:35.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:35.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:35.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:35.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:35.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:35.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:35.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:35.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:35.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:35.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:35.470][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:35.471][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:35.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:35.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:35.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:35.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:35.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:35.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:35.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:35.489][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:03:35.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:35.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:35.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:35.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:35.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:35.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:35.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:35.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.506][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:35.507][private$selectFields]
biodb.TRACE[2025-01-04 16:03:35.508][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:35.509][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:35.509][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:35.510][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.511][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.513][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.514][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.515][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.516][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.517][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:35.518][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:35.519][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.520][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.521][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.522][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:35.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.534][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-01-04 16:03:35.535][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:35.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:35.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:35.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:35.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:35.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:35.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:35.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.550][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:35.551][private$selectFields]
biodb.TRACE[2025-01-04 16:03:35.552][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:35.553][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:35.554][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:35.554][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.555][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.557][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.558][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.559][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.561][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.562][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:35.562][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:35.563][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.564][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.566][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.567][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:35.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.578][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-01-04 16:03:35.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:35.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:35.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:35.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:35.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:35.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:35.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:35.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.598][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:35.599][private$selectFields]
biodb.TRACE[2025-01-04 16:03:35.600][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:35.601][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:35.602][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:35.602][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.603][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.605][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.606][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.607][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.608][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.609][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:35.610][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:35.611][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.612][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.614][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.614][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:35.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:35.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.626][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-01-04 16:03:35.627][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:03:35.628][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-01-04 16:03:35.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:35.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:35.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:35.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:35.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:35.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:35.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:35.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:35.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:35.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:35.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:35.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:35.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:35.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:35.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:35.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:35.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:35.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:35.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:35.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:35.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:35.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:35.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:35.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:35.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:35.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:35.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:35.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:35.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:35.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:35.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:35.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:35.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:35.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:35.695][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:03:35.698][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:35.699][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:35.700][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-01-04 16:03:36.064][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-01-04 16:03:37.654][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:37.659][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content"
biodb.TRACE[2025-01-04 16:03:37.667][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.request"
biodb.DEBUG[2025-01-04 16:03:37.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:37.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:37.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:37.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:37.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:37.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:37.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:37.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:37.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:37.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:37.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:37.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:37.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:37.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:37.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:37.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:37.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:37.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:37.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:37.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:37.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:37.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:37.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:37.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:37.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:37.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:37.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:37.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:37.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:37.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:37.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:37.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:37.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:37.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:37.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:37.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:37.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:37.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:37.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:37.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:37.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:37.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:37.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:37.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:37.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:37.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:37.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:37.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:37.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:37.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:37.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:37.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:37.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:37.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:37.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:37.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:37.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:37.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:37.768][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:37.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:37.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:37.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:37.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:37.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:37.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:37.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:37.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:37.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:37.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:37.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:37.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:37.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:37.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:37.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:37.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:37.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:37.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:37.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:37.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:37.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:37.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:37.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:37.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:37.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:37.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:37.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:37.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:37.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:37.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:37.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:37.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:37.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:37.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:37.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:37.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:37.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:37.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:37.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:37.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:37.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:37.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:37.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:37.814][private$loadEntries] Creating entries from ids [1]: "9442".
biodb.DEBUG[2025-01-04 16:03:37.815][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:37.816][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9442".
biodb.TRACE[2025-01-04 16:03:37.817][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:37.818][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:37.819][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:37.820][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:37.821][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:37.822][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:37.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:37.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:37.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:37.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:37.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:37.831][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:37.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:37.832][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.DEBUG[2025-01-04 16:03:37.835][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:37.836][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:37.837][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
biodb.TRACE[2025-01-04 16:03:38.607][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442).
biodb.DEBUG[2025-01-04 16:03:38.963][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:38.965][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.content"
biodb.TRACE[2025-01-04 16:03:38.968][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7d1576b26aed79f4c1d758a3f87c749b.request"
biodb.TRACE[2025-01-04 16:03:38.970][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9442.xml"
biodb.DEBUG[2025-01-04 16:03:38.971][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:38.972][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:38.973][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:38.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:38.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:38.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:38.980][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:38.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:38.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:38.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:38.985][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:38.986][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:38.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:38.987][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:38.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:38.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:38.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:38.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:38.992][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:38.993][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:38.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:38.995][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:38.996][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:38.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:38.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:38.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:39.000][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:39.001][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:39.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:39.002][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:39.003][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:39.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:39.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:39.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:39.007][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:39.008][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:39.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:39.013][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:39.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:39.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:39.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:39.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:39.022][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:39.023][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:39.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:39.024][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:39.025][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:39.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:39.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:39.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:39.029][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:39.030][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:39.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:39.031][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:39.032][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:39.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:39.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:39.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:39.036][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:39.037][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:39.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:39.039][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:39.040][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:39.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:39.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:39.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:39.043][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:39.044][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:39.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:39.046][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:39.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:39.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:39.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:39.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:39.050][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:39.051][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:39.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:39.053][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:39.054][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:39.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:39.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:39.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:39.058][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:39.059][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:39.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:39.060][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:39.061][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:39.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:39.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:39.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:39.065][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:39.066][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:39.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:39.068][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:39.069][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:39.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:39.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:39.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:39.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:39.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:39.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:39.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:39.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:39.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:39.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:39.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:39.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:39.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:39.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:39.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:39.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:39.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:39.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:39.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:39.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:39.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:39.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:39.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:39.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:39.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:39.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:39.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:39.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:39.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:39.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:39.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:39.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:39.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:39.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:39.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:39.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:39.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:39.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:39.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:39.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:39.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:39.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:39.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:39.107][self$createEntryFromContent] Accession numbers: 9442.
biodb.TRACE[2025-01-04 16:03:39.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:39.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:39.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:39.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:39.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:39.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:39.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:39.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:39.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:39.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:39.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:39.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:39.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:39.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:39.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:39.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:39.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:39.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:39.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:39.127][private$loadEntries] Creating entries from ids [1]: "34764".
biodb.DEBUG[2025-01-04 16:03:39.128][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:39.130][cch$loadFileContent] Trying to load 1 files from cache: [1]: "34764".
biodb.TRACE[2025-01-04 16:03:39.131][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:39.132][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:39.133][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:39.133][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:39.134][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:39.135][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:39.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:39.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:39.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:39.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:39.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:39.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:39.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:39.147][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.DEBUG[2025-01-04 16:03:39.149][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:39.150][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:39.151][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
biodb.TRACE[2025-01-04 16:03:39.557][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764).
biodb.DEBUG[2025-01-04 16:03:39.927][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:39.931][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.content"
biodb.TRACE[2025-01-04 16:03:39.938][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a38508ac0dc37ed2da31f7bda33ae97f.request"
biodb.TRACE[2025-01-04 16:03:39.943][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/34764.xml"
biodb.DEBUG[2025-01-04 16:03:39.946][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:39.949][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:39.951][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:39.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:39.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:39.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:39.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:39.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:39.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:39.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:39.986][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:39.988][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:39.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:39.990][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:39.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:39.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:39.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:39.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:39.997][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:39.998][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:39.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.000][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.002][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:40.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:40.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.006][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:40.007][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:40.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.009][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.011][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:40.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:40.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.014][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:40.015][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:40.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.017][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:40.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:40.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.022][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:40.023][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:40.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.024][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:40.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:40.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.029][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:40.030][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:40.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.032][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.033][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:40.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:40.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.036][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:40.037][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:40.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.039][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.040][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:40.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:40.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.044][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:40.044][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:40.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.046][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:40.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:40.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.051][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:40.052][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:40.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.053][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.054][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:40.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:40.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.058][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:40.059][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:40.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.061][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.062][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:40.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:40.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.065][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:40.066][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:40.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.068][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.069][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:40.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:40.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:40.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:40.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:40.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:40.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:40.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:40.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:40.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:40.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:40.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:40.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:40.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:40.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:40.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:40.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:40.107][self$createEntryFromContent] Accession numbers: 34764.
biodb.TRACE[2025-01-04 16:03:40.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:40.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:40.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:40.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:40.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:40.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:40.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:40.119][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:03:40.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:40.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:40.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:40.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:40.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:40.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:40.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:40.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.136][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:40.137][private$selectFields]
biodb.TRACE[2025-01-04 16:03:40.138][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:40.139][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:40.140][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:40.144][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.145][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.147][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.148][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.148][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.150][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.151][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:40.152][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:40.153][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.154][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.155][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.156][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:40.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.168][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-01-04 16:03:40.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:40.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:40.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:40.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:40.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:40.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:40.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:40.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.184][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:40.185][private$selectFields]
biodb.TRACE[2025-01-04 16:03:40.186][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:40.187][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:40.188][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:40.188][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.189][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.191][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.192][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.193][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.194][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.195][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:40.196][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:40.197][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.198][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.200][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.200][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:40.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.212][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-01-04 16:03:40.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:40.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:40.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:40.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:40.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:40.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:40.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:40.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.228][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:40.229][private$selectFields]
biodb.TRACE[2025-01-04 16:03:40.230][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:40.231][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:40.232][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:40.232][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.233][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.235][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.236][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.237][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.238][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.239][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:40.240][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:40.241][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.242][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.243][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.244][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:40.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:40.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:40.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:40.256][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2025-01-04 16:03:40.257][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:03:40.258][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:03:40.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:40.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:40.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:40.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:40.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:40.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:40.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:40.269][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:03:40.272][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:40.273][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:40.275][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-01-04 16:03:40.631][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-01-04 16:03:41.321][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:41.326][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.content"
biodb.TRACE[2025-01-04 16:03:41.334][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.request"
biodb.DEBUG[2025-01-04 16:03:41.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:41.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:41.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:41.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:41.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:41.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:41.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:41.377][private$loadEntries] Creating entries from ids [1]: "2535".
biodb.DEBUG[2025-01-04 16:03:41.379][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:41.381][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2535".
biodb.TRACE[2025-01-04 16:03:41.382][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:41.384][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:41.385][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:41.386][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:41.388][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:41.389][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:41.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:41.393][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:41.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:41.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:41.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:41.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:41.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:41.402][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.DEBUG[2025-01-04 16:03:41.405][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:41.406][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:41.407][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
biodb.TRACE[2025-01-04 16:03:41.770][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535).
biodb.DEBUG[2025-01-04 16:03:42.117][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:42.119][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.content"
biodb.TRACE[2025-01-04 16:03:42.122][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e1d9514645c3005d4e4f643b2d18f099.request"
biodb.TRACE[2025-01-04 16:03:42.124][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2535.xml"
biodb.DEBUG[2025-01-04 16:03:42.126][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:42.127][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:42.128][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:42.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:42.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:42.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:42.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:42.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:42.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:42.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:42.139][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:42.140][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:42.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.142][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:42.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:42.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.146][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:42.147][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:42.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.149][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.150][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:42.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:42.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.154][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:42.155][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:42.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.156][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.157][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:42.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:42.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.161][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:42.162][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:42.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.164][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.165][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:42.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:42.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.168][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:42.169][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:42.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.171][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:42.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:42.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.175][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:42.176][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:42.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.178][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.179][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:42.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:42.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.183][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:42.184][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:42.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.185][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.186][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:42.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:42.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.190][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:42.191][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:42.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.193][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:42.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:42.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.197][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:42.198][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:42.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.200][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.201][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:42.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:42.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.204][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:42.205][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:42.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.207][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.208][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:42.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:42.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.212][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:42.213][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:42.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.215][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.216][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:42.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:42.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:42.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:42.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:42.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:42.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:42.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:42.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:42.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:42.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:42.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:42.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:42.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:42.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:42.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:42.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:42.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:42.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:42.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:42.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:42.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:42.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:42.262][self$createEntryFromContent] Accession numbers: 2535.
biodb.TRACE[2025-01-04 16:03:42.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:42.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:42.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:42.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:42.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:42.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:42.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:42.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:42.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:42.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:42.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:42.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:42.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:42.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:42.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:42.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:42.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:42.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:42.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:42.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:42.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:42.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:42.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:42.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:42.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:42.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:42.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:42.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:42.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:42.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:42.301][private$loadEntries] Creating entries from ids [1]: "5525".
biodb.DEBUG[2025-01-04 16:03:42.302][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:42.303][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5525".
biodb.TRACE[2025-01-04 16:03:42.305][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:42.305][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:42.306][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:42.307][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:42.308][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:42.309][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:42.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:42.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:42.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:42.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:42.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:42.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:42.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:42.320][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.DEBUG[2025-01-04 16:03:42.322][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:42.323][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:42.324][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
biodb.TRACE[2025-01-04 16:03:42.696][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525).
biodb.DEBUG[2025-01-04 16:03:43.042][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:43.044][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.content"
biodb.TRACE[2025-01-04 16:03:43.047][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8c1563abc6b93d34a6b6b66375881583.request"
biodb.TRACE[2025-01-04 16:03:43.049][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5525.xml"
biodb.DEBUG[2025-01-04 16:03:43.050][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:43.051][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:43.052][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:43.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:43.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:43.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:43.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:43.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:43.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:43.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:43.064][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:43.065][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:43.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.066][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:43.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:43.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.071][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:43.072][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:43.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.074][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.075][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:43.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:43.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.078][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:43.079][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:43.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.081][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.082][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:43.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:43.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.086][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:43.087][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:43.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.088][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:43.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:43.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.093][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:43.094][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:43.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.096][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.097][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:43.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:43.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.100][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:43.101][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:43.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.103][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.104][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:43.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:43.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.108][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:43.109][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:43.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.110][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.111][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:43.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:43.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.115][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:43.124][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:43.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.125][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:43.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:43.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.130][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:43.131][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:43.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.132][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.134][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:43.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:43.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.137][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:43.138][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:43.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.140][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.141][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:43.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:43.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.144][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:43.145][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:43.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.147][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.148][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:43.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:43.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:43.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:43.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:43.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:43.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:43.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:43.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:43.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:43.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:43.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:43.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:43.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:43.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:43.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:43.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:43.187][self$createEntryFromContent] Accession numbers: 5525.
biodb.TRACE[2025-01-04 16:03:43.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:43.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:43.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:43.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:43.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:43.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:43.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:43.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:43.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:43.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:43.204][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:43.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:43.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:43.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:43.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:43.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:43.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:43.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:43.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:43.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:43.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:43.217][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:03:43.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:43.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:43.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:43.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:43.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:43.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:43.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:43.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.235][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:43.235][private$selectFields]
biodb.TRACE[2025-01-04 16:03:43.236][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:43.237][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:43.238][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:43.239][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.240][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.241][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.242][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.243][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.245][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.246][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:43.247][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:43.248][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.249][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.250][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.251][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:43.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.263][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2025-01-04 16:03:43.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:43.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:43.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:43.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:43.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:43.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:43.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:43.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.284][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:43.284][private$selectFields]
biodb.TRACE[2025-01-04 16:03:43.285][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:43.286][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:43.287][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:43.288][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.289][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.290][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.291][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.292][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.294][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.295][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:43.296][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:43.296][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.297][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.299][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.300][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:43.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.312][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-01-04 16:03:43.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:43.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:43.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:43.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:43.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:43.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:43.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:43.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.329][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:43.330][private$selectFields]
biodb.TRACE[2025-01-04 16:03:43.330][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:43.331][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:43.332][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:43.333][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.334][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.335][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.336][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.337][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.339][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.340][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:43.341][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:43.341][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.342][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.344][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.345][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:43.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:43.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:43.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:43.357][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-01-04 16:03:43.357][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:03:43.358][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:03:43.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:43.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:43.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:43.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:43.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:43.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:43.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:43.370][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:03:43.373][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:43.374][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:43.376][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-01-04 16:03:43.722][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-01-04 16:03:44.070][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:44.074][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.content"
biodb.TRACE[2025-01-04 16:03:44.082][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.request"
biodb.DEBUG[2025-01-04 16:03:44.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:44.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:44.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:44.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:44.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:44.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:44.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:44.108][private$loadEntries] Creating entries from ids [1]: "31303".
biodb.DEBUG[2025-01-04 16:03:44.111][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:44.114][cch$loadFileContent] Trying to load 1 files from cache: [1]: "31303".
biodb.TRACE[2025-01-04 16:03:44.116][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:44.117][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:44.118][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:44.119][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:44.120][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:44.121][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:44.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:44.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:44.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:44.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:44.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:44.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:44.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:44.132][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.DEBUG[2025-01-04 16:03:44.135][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:44.136][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:44.137][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
biodb.TRACE[2025-01-04 16:03:44.507][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303).
biodb.DEBUG[2025-01-04 16:03:44.857][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:44.859][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.content"
biodb.TRACE[2025-01-04 16:03:44.862][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/99089a071b7e4bcfb0ef9a12b49b39b2.request"
biodb.TRACE[2025-01-04 16:03:44.864][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/31303.xml"
biodb.DEBUG[2025-01-04 16:03:44.865][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:44.876][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:44.878][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:44.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:44.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:44.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:44.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:44.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:44.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:44.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:44.889][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:44.890][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:44.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:44.892][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:44.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:44.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:44.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:44.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:44.896][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:44.897][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:44.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:44.899][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:44.900][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:44.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:44.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:44.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:44.904][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:44.905][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:44.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:44.906][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:44.907][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:44.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:44.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:44.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:44.911][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:44.912][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:44.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:44.914][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:44.915][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:44.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:44.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:44.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:44.918][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:44.919][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:44.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:44.921][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:44.922][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:44.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:44.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:44.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:44.925][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:44.926][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:44.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:44.928][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:44.929][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:44.930][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:44.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:44.932][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:44.933][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:44.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:44.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:44.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:44.936][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:44.937][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:44.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:44.939][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:44.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:44.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:44.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:44.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:44.943][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:44.944][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:44.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:44.946][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:44.947][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:44.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:44.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:44.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:44.951][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:44.952][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:44.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:44.953][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:44.954][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:44.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:44.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:44.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:44.958][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:44.959][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:44.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:44.961][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:44.962][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:44.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:44.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:44.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:44.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:44.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:44.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:44.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:44.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:44.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:44.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:44.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:44.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:44.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:44.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:44.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:44.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:44.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:44.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:44.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:44.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:44.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:44.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:44.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:44.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:44.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:44.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:44.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:44.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:44.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:44.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:44.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:44.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:44.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:44.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:44.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:44.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:44.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:44.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:44.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:44.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:44.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:44.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:44.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:45.000][self$createEntryFromContent] Accession numbers: 31303.
biodb.TRACE[2025-01-04 16:03:45.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:45.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:45.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:45.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:45.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:45.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:45.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:45.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:45.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:45.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:45.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:45.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:45.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:45.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:45.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:45.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:45.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:45.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:45.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:45.021][private$loadEntries] Creating entries from ids [1]: "37118".
biodb.DEBUG[2025-01-04 16:03:45.022][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:45.023][cch$loadFileContent] Trying to load 1 files from cache: [1]: "37118".
biodb.TRACE[2025-01-04 16:03:45.024][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:45.025][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:45.026][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:45.027][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:45.032][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:45.033][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:45.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:45.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:45.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:45.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:45.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:45.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:45.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:45.044][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.DEBUG[2025-01-04 16:03:45.046][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:45.047][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:45.048][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
biodb.TRACE[2025-01-04 16:03:45.425][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118).
biodb.DEBUG[2025-01-04 16:03:46.165][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:46.167][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.content"
biodb.TRACE[2025-01-04 16:03:46.170][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37e09c6197385dffaf0a241198ec6309.request"
biodb.TRACE[2025-01-04 16:03:46.172][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/37118.xml"
biodb.DEBUG[2025-01-04 16:03:46.173][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:46.175][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:46.176][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:46.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:46.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:46.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:46.183][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:46.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:46.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:46.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:46.188][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:46.189][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:46.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.191][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:46.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:46.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:46.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:46.196][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:46.197][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:46.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.198][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:46.199][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:46.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:46.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:46.203][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:46.204][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:46.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.206][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:46.207][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:46.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:46.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:46.211][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:46.212][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:46.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.214][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:46.215][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:46.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:46.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:46.218][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:46.219][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:46.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.221][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:46.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:46.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:46.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:46.225][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:46.226][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:46.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.228][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:46.229][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:46.230][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:46.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.232][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:46.233][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:46.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:46.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:46.236][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:46.237][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:46.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.239][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:46.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:46.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:46.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:46.243][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:46.244][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:46.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.246][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:46.247][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:46.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:46.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:46.251][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:46.251][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:46.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.253][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:46.254][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:46.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:46.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:46.258][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:46.259][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:46.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.260][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:46.261][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:46.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:46.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:46.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:46.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:46.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:46.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:46.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:46.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:46.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:46.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:46.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:46.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:46.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:46.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:46.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:46.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:46.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:46.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:46.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:46.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:46.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:46.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:46.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:46.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:46.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:46.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:46.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:46.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:46.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:46.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:46.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:46.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:46.308][self$createEntryFromContent] Accession numbers: 37118.
biodb.TRACE[2025-01-04 16:03:46.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:46.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:46.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:46.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:46.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:46.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:46.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:46.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:46.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:46.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:46.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:46.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:46.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:46.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:46.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:46.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:46.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:46.328][private$loadEntries] Creating entries from ids [1]: "39424".
biodb.DEBUG[2025-01-04 16:03:46.329][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:46.330][cch$loadFileContent] Trying to load 1 files from cache: [1]: "39424".
biodb.TRACE[2025-01-04 16:03:46.331][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:46.332][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:46.333][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:46.334][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:46.335][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:46.336][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:46.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:46.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:46.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:46.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:46.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:46.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:46.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:46.347][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.DEBUG[2025-01-04 16:03:46.349][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:46.350][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:46.351][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
biodb.TRACE[2025-01-04 16:03:46.725][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424).
biodb.DEBUG[2025-01-04 16:03:47.067][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:47.069][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.content"
biodb.TRACE[2025-01-04 16:03:47.072][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/da5bac251de02a0ce66c3d69c0d59bb8.request"
biodb.TRACE[2025-01-04 16:03:47.075][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/39424.xml"
biodb.DEBUG[2025-01-04 16:03:47.076][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:47.077][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:47.078][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:47.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:47.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:47.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:47.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:47.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:47.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:47.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:47.090][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:47.091][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:47.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.093][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:47.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:47.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:47.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:47.098][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:47.099][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:47.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.100][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:47.102][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:47.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:47.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:47.105][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:47.106][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:47.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.108][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:47.109][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:47.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:47.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:47.113][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:47.114][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:47.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.116][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:47.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:47.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:47.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:47.120][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:47.121][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:47.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.123][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:47.124][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:47.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:47.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:47.128][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:47.128][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:47.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.130][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:47.131][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:47.132][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:47.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.134][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:47.135][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:47.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:47.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:47.138][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:47.139][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:47.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.141][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:47.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:47.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:47.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:47.146][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:47.147][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:47.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.148][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:47.149][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:47.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:47.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:47.153][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:47.154][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:47.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.156][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:47.157][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:47.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:47.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:47.160][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:47.161][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:47.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.163][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:47.164][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:47.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:47.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:47.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:47.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:47.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:47.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:47.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:47.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:47.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:47.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:47.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:47.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:47.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:47.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:47.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:47.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:47.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:47.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:47.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:47.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:47.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:47.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:47.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:47.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:47.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:47.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:47.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:47.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:47.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:47.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:47.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:47.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:47.210][self$createEntryFromContent] Accession numbers: 39424.
biodb.TRACE[2025-01-04 16:03:47.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:47.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:47.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:47.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:47.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:47.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:47.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:47.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:47.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:47.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:47.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:47.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:47.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:47.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:47.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:47.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:47.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:47.231][private$loadEntries] Creating entries from ids [1]: "81767".
biodb.DEBUG[2025-01-04 16:03:47.232][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:47.233][cch$loadFileContent] Trying to load 1 files from cache: [1]: "81767".
biodb.TRACE[2025-01-04 16:03:47.234][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:47.235][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:47.236][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:47.237][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:47.238][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:47.239][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:47.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:47.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:47.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:47.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:47.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:47.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:47.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:47.250][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.DEBUG[2025-01-04 16:03:47.252][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:47.253][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:47.254][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
biodb.TRACE[2025-01-04 16:03:47.867][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767).
biodb.DEBUG[2025-01-04 16:03:48.243][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:48.248][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.content"
biodb.TRACE[2025-01-04 16:03:48.254][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6d9dc9192959d977e17745ebfa06bb73.request"
biodb.TRACE[2025-01-04 16:03:48.260][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/81767.xml"
biodb.DEBUG[2025-01-04 16:03:48.262][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:48.265][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:48.268][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:48.271][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:48.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:48.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:48.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:48.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:48.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:48.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:48.293][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:48.295][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:48.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.298][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:48.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:48.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.305][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:48.307][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:48.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.309][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.311][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:48.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:48.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.316][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:48.317][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:48.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.319][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.320][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:48.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:48.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.325][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:48.326][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:48.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.328][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:48.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:48.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.333][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:48.334][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:48.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.335][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:48.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:48.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.340][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:48.341][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:48.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.343][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.344][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:48.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:48.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.348][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:48.348][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:48.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.350][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.351][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:48.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:48.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.355][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.356][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.357][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.370][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:48.371][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:48.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.373][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.374][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:48.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:48.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.377][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:48.378][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:48.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.380][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.381][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:48.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:48.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.385][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:48.385][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:48.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.387][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.388][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:48.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:48.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:48.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:48.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:48.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:48.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:48.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:48.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:48.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:48.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:48.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:48.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:48.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:48.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:48.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:48.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:48.427][self$createEntryFromContent] Accession numbers: 81767.
biodb.TRACE[2025-01-04 16:03:48.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:48.438][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:48.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:48.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:48.443][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:48.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:48.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:48.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:48.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:48.457][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:03:48.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:48.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:48.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:48.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:48.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:48.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:48.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:48.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.474][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:48.475][private$selectFields]
biodb.TRACE[2025-01-04 16:03:48.476][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:48.477][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:48.477][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:48.478][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.479][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.481][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.482][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.483][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.484][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.485][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:48.486][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:48.487][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.488][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.490][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.490][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:48.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.502][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2025-01-04 16:03:48.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:48.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:48.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:48.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:48.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:48.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:48.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:48.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.523][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:48.523][private$selectFields]
biodb.TRACE[2025-01-04 16:03:48.524][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:48.525][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:48.526][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:48.527][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.528][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.529][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.530][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.531][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.533][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.534][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:48.534][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:48.535][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.536][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.538][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.539][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:48.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.550][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2025-01-04 16:03:48.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:48.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:48.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:48.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:48.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:48.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:48.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:48.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.567][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:48.568][private$selectFields]
biodb.TRACE[2025-01-04 16:03:48.568][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:48.569][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:48.570][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:48.571][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.572][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.573][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.574][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.575][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.577][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.578][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:48.579][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:48.579][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.580][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.582][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.583][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:48.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.594][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2025-01-04 16:03:48.595][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:03:48.596][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:03:48.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:48.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:48.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:48.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:48.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:48.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:48.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:48.622][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:03:48.624][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:03:48.626][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-01-04 16:03:48.627][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:03:48.628][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-01-04 16:03:48.630][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:03:48.633][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:03:48.634][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-01-04 16:03:48.635][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:03:48.636][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-01-04 16:03:48.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:48.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:48.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:48.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:48.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:48.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:48.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:48.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:48.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:48.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:48.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:48.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:48.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:48.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:48.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:48.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:48.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:48.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:48.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:48.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:48.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:48.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:48.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:48.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:48.699][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:03:48.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:48.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:48.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:48.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:48.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:48.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:48.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:48.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.716][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:48.717][private$selectFields]
biodb.TRACE[2025-01-04 16:03:48.717][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:48.718][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:48.719][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:48.720][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.721][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.723][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.723][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.724][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.726][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.727][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:48.728][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:48.729][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.729][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.731][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.732][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:48.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.743][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-01-04 16:03:48.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:48.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:48.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:48.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:48.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:48.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:48.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:48.753][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.760][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:48.761][private$selectFields]
biodb.TRACE[2025-01-04 16:03:48.761][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:48.762][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:48.763][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:48.764][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.765][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.766][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.767][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.768][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.770][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.771][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:48.772][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:48.772][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.773][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.775][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.776][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:48.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.787][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-01-04 16:03:48.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:48.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:48.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:48.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:48.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:48.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:48.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:48.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.804][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:48.805][private$selectFields]
biodb.TRACE[2025-01-04 16:03:48.806][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:48.807][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:48.807][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:48.808][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.809][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.811][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.812][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.813][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.814][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.815][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:48.816][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:48.817][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.821][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.823][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.824][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:48.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.835][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-01-04 16:03:48.836][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:03:48.837][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:03:48.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:48.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:48.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:48.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:48.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:48.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:48.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:48.849][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:03:48.851][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:03:48.852][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-01-04 16:03:48.853][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:03:48.855][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-01-04 16:03:48.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:48.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:48.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:48.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:48.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:48.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:48.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:48.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:48.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:48.876][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:48.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:48.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:48.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:48.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:48.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:48.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:48.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:48.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:48.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:48.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:48.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:48.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:48.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:48.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:48.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:48.913][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:03:48.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:48.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:48.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:48.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:48.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:48.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:48.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:48.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.930][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:48.931][private$selectFields]
biodb.TRACE[2025-01-04 16:03:48.932][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:48.932][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:48.933][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:48.934][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.935][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.937][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.938][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.938][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.940][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.941][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:48.942][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:48.943][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.944][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.945][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.946][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:48.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.958][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-01-04 16:03:48.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:48.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:48.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:48.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:48.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:48.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:48.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:48.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.978][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:48.979][private$selectFields]
biodb.TRACE[2025-01-04 16:03:48.980][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:48.981][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:48.981][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:48.982][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.983][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.985][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.986][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.987][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.988][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.989][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:48.990][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:48.991][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.992][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.993][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.994][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:48.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:48.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:48.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:48.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.006][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-01-04 16:03:49.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:49.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:49.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:49.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:49.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:49.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:49.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:49.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.022][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:49.023][private$selectFields]
biodb.TRACE[2025-01-04 16:03:49.024][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:49.025][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:49.025][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:49.026][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.027][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.029][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.030][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.031][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.032][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.033][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:49.034][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:49.035][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.036][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.037][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.038][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:49.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.050][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-01-04 16:03:49.051][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:03:49.051][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:03:49.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:49.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:49.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:49.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:49.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:49.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:49.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:49.063][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:03:49.065][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:03:49.067][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-01-04 16:03:49.068][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:03:49.069][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-01-04 16:03:49.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:49.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:49.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:49.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:49.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:49.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:49.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:49.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:49.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:49.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:49.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:49.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:49.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:49.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:49.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:49.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:49.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:49.096][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:49.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:49.097][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:49.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:49.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:49.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:49.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:49.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:49.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:49.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:49.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:49.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:49.110][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:49.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:49.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:49.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:49.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:49.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:49.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:49.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:49.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:49.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:49.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:49.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:49.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:49.135][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:03:49.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:49.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:49.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:49.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:49.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:49.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:49.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:49.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.152][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:49.153][private$selectFields]
biodb.TRACE[2025-01-04 16:03:49.154][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:49.154][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:49.155][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:49.156][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.157][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.159][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.159][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.160][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.162][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.163][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:49.164][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:49.165][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.166][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.167][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.168][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:49.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.180][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-01-04 16:03:49.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:49.181][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:49.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:49.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:49.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:49.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:49.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:49.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.196][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:49.197][private$selectFields]
biodb.TRACE[2025-01-04 16:03:49.197][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:49.198][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:49.199][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:49.200][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.201][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.202][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.203][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.204][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.206][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.207][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:49.208][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:49.208][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.209][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.211][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.212][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:49.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.223][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-01-04 16:03:49.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:49.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:49.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:49.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:49.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:49.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:49.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:49.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.240][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:49.240][private$selectFields]
biodb.TRACE[2025-01-04 16:03:49.241][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:49.242][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:49.243][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:49.244][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.245][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.246][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.247][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.248][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.250][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.251][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:49.252][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:49.253][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.253][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.255][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.256][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:49.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:49.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:49.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:49.268][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-01-04 16:03:49.269][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:03:49.269][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:03:49.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:49.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:49.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:49.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:49.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:49.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:49.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:49.299][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:03:49.301][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:49.302][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:49.304][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-01-04 16:03:49.659][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-01-04 16:03:50.015][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:50.020][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.content"
biodb.TRACE[2025-01-04 16:03:50.028][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.request"
biodb.DEBUG[2025-01-04 16:03:50.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:50.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:50.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:50.050][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:50.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:50.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:50.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:50.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:50.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:50.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:50.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:50.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:50.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:50.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:50.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:50.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:50.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:50.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:50.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:50.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:50.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:50.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:50.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:50.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:50.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:50.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:50.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:50.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:50.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:50.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:50.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:50.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:50.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:50.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:50.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:50.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:50.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:50.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:50.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:50.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:50.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:50.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:50.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:50.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:50.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:50.113][private$loadEntries] Creating entries from ids [1]: "17813".
biodb.DEBUG[2025-01-04 16:03:50.114][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:50.116][cch$loadFileContent] Trying to load 1 files from cache: [1]: "17813".
biodb.TRACE[2025-01-04 16:03:50.117][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:50.118][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:50.119][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:50.120][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:50.121][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:50.122][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:50.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:50.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:50.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:50.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:50.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:50.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:50.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:50.135][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.DEBUG[2025-01-04 16:03:50.137][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:50.138][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:50.139][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
biodb.TRACE[2025-01-04 16:03:50.519][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813).
biodb.DEBUG[2025-01-04 16:03:51.140][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:51.144][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.content"
biodb.TRACE[2025-01-04 16:03:51.151][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62f7e1534a05c51cc1431eff021df0bd.request"
biodb.TRACE[2025-01-04 16:03:51.156][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/17813.xml"
biodb.DEBUG[2025-01-04 16:03:51.159][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:51.162][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:51.164][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:51.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:51.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:51.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:51.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:51.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:51.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:51.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:51.190][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:51.192][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:51.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.195][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:51.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:51.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:51.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:51.203][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:51.204][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:51.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.206][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:51.208][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:51.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:51.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:51.213][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:51.214][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:51.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.216][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:51.218][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:51.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:51.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:51.233][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:51.234][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:51.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.236][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:51.237][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:51.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:51.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:51.241][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:51.242][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:51.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.243][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:51.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:51.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:51.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:51.248][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:51.249][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:51.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.250][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:51.251][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:51.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:51.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:51.255][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:51.256][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:51.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.258][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:51.259][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:51.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:51.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:51.262][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:51.263][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:51.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.265][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:51.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:51.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:51.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:51.269][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:51.270][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:51.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.272][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:51.273][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:51.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:51.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:51.277][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:51.278][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:51.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.279][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:51.280][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:51.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:51.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:51.284][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:51.285][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:51.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.287][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:51.288][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:51.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:51.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:51.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:51.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:51.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:51.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:51.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:51.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:51.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:51.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:51.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:51.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:51.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:51.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:51.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:51.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:51.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:51.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:51.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:51.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:51.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:51.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:51.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:51.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:51.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:51.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:51.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:51.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:51.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:51.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:51.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:51.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:51.326][self$createEntryFromContent] Accession numbers: 17813.
biodb.TRACE[2025-01-04 16:03:51.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:51.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:51.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:51.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:51.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:51.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:51.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:51.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:51.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:51.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:51.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:51.338][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:51.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:51.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:51.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:51.345][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:51.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:51.346][private$loadEntries] Creating entries from ids [1]: "30109".
biodb.DEBUG[2025-01-04 16:03:51.347][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:51.349][cch$loadFileContent] Trying to load 1 files from cache: [1]: "30109".
biodb.TRACE[2025-01-04 16:03:51.350][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:51.351][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:51.352][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:51.353][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:51.354][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:51.354][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:51.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:51.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:51.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:51.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:51.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:51.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:51.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:51.366][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.DEBUG[2025-01-04 16:03:51.368][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:51.369][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:51.370][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
biodb.TRACE[2025-01-04 16:03:51.761][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109).
biodb.DEBUG[2025-01-04 16:03:52.111][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:52.116][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.content"
biodb.TRACE[2025-01-04 16:03:52.122][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8ed09c4c418a18a426e08dad5ae6a3f9.request"
biodb.TRACE[2025-01-04 16:03:52.127][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/30109.xml"
biodb.DEBUG[2025-01-04 16:03:52.130][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:52.133][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:52.149][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:52.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:52.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:52.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:52.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:52.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:52.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:52.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:52.171][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:52.172][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:52.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.175][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:52.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:52.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:52.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:52.182][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:52.183][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:52.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.185][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:52.187][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:52.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:52.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:52.191][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:52.192][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:52.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.194][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:52.195][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:52.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:52.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:52.199][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:52.200][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:52.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.202][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:52.203][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:52.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:52.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:52.206][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:52.207][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:52.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.209][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:52.210][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:52.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:52.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:52.214][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:52.215][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:52.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.216][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:52.217][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:52.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:52.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:52.221][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:52.222][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:52.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.223][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:52.224][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:52.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:52.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:52.228][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:52.229][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:52.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.230][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:52.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:52.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:52.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:52.235][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:52.236][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:52.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.238][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:52.239][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:52.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:52.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:52.242][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:52.243][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:52.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.245][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:52.246][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:52.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:52.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:52.249][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:52.250][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:52.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.252][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:52.253][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:52.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:52.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:52.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:52.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:52.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:52.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:52.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:52.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:52.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:52.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:52.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:52.267][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:52.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:52.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:52.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:52.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:52.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:52.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:52.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:52.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:52.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:52.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:52.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:52.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:52.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:52.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:52.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:52.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:52.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:52.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:52.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:52.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:52.292][self$createEntryFromContent] Accession numbers: 30109.
biodb.TRACE[2025-01-04 16:03:52.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:52.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:52.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:52.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:52.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:52.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:52.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:52.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:52.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:52.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:52.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:52.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:52.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:52.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:52.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:52.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:52.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:52.312][private$loadEntries] Creating entries from ids [1]: "33275".
biodb.DEBUG[2025-01-04 16:03:52.313][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:52.314][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33275".
biodb.TRACE[2025-01-04 16:03:52.315][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:52.316][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:52.322][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:52.323][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:52.324][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:52.324][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:52.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:52.327][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:52.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:52.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:52.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:52.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:52.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:52.335][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.DEBUG[2025-01-04 16:03:52.338][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:52.339][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:52.340][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
biodb.TRACE[2025-01-04 16:03:52.750][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275).
biodb.DEBUG[2025-01-04 16:03:53.108][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:53.112][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.content"
biodb.TRACE[2025-01-04 16:03:53.119][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e7b5440dd739854267ce8eafb6ea36b1.request"
biodb.TRACE[2025-01-04 16:03:53.124][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33275.xml"
biodb.DEBUG[2025-01-04 16:03:53.127][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:53.130][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:53.132][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:53.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:53.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:53.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:53.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:53.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:53.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:53.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:53.157][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:53.159][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:53.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.162][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:53.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:53.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:53.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:53.170][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:53.171][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:53.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.174][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:53.175][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:53.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:53.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:53.180][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:53.181][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:53.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.183][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:53.185][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:53.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:53.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:53.189][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:53.190][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:53.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.192][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:53.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:53.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:53.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:53.197][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:53.198][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:53.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.200][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:53.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:53.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:53.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:53.204][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:53.205][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:53.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.207][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:53.208][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:53.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:53.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:53.211][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:53.212][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:53.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.214][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:53.215][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:53.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:53.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:53.218][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:53.219][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:53.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.221][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:53.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:53.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:53.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:53.226][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:53.226][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:53.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.228][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:53.229][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:53.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:53.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:53.233][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:53.234][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:53.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.235][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:53.237][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:53.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:53.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:53.240][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:53.241][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:53.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.243][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:53.244][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:53.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:53.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:53.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:53.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:53.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:53.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:53.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:53.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:53.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:53.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:53.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:53.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:53.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:53.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:53.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:53.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:53.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:53.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:53.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:53.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:53.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:53.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:53.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:53.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:53.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:53.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:53.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:53.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:53.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:53.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:53.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:53.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:53.291][self$createEntryFromContent] Accession numbers: 33275.
biodb.TRACE[2025-01-04 16:03:53.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:53.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:53.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:53.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:53.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:53.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:53.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:53.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:53.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:53.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:53.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:53.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:53.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:53.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:53.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:53.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:53.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:53.311][private$loadEntries] Creating entries from ids [1]: "33277".
biodb.DEBUG[2025-01-04 16:03:53.312][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:53.313][cch$loadFileContent] Trying to load 1 files from cache: [1]: "33277".
biodb.TRACE[2025-01-04 16:03:53.314][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:53.315][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:53.316][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:53.317][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:53.318][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:53.319][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:53.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:53.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:53.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:53.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:53.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:53.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:53.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:53.330][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.DEBUG[2025-01-04 16:03:53.332][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:53.333][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:53.334][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
biodb.TRACE[2025-01-04 16:03:53.715][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277).
biodb.DEBUG[2025-01-04 16:03:54.070][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:54.074][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.content"
biodb.TRACE[2025-01-04 16:03:54.081][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9e077bb25f478950bf1d29f1e643c2aa.request"
biodb.TRACE[2025-01-04 16:03:54.086][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/33277.xml"
biodb.DEBUG[2025-01-04 16:03:54.089][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:54.092][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:54.094][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:54.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:54.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:54.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:54.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:54.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:54.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:54.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:54.120][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:54.121][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:54.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.124][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:54.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:54.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:54.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:54.132][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:54.133][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:54.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.136][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:54.137][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:54.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:54.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:54.142][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:54.143][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:54.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.145][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:54.147][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:54.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:54.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:54.151][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:54.152][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:54.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.154][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:54.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:54.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:54.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:54.159][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:54.160][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:54.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.162][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:54.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:54.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:54.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:54.166][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:54.167][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:54.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.169][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:54.170][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:54.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:54.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:54.173][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:54.174][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:54.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.176][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:54.177][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:54.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:54.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:54.181][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:54.182][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:54.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.183][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:54.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:54.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:54.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:54.188][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:54.189][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:54.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.191][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:54.192][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:54.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:54.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:54.195][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:54.196][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:54.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.198][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:54.199][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:54.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:54.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:54.203][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:54.204][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:54.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.205][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:54.206][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:54.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:54.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:54.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:54.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:54.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:54.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:54.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:54.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:54.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:54.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:54.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:54.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:54.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:54.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:54.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:54.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:54.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:54.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:54.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:54.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:54.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:54.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:54.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:54.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:54.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:54.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:54.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:54.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:54.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:54.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:54.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:54.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:54.253][self$createEntryFromContent] Accession numbers: 33277.
biodb.TRACE[2025-01-04 16:03:54.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:54.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:54.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:54.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:54.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:54.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:54.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:54.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:54.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:54.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:54.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:54.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:54.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:54.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:54.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:54.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:54.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:54.273][private$loadEntries] Creating entries from ids [1]: "52421".
biodb.DEBUG[2025-01-04 16:03:54.274][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:54.275][cch$loadFileContent] Trying to load 1 files from cache: [1]: "52421".
biodb.TRACE[2025-01-04 16:03:54.276][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:54.277][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:54.278][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:54.279][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:54.280][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:54.281][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:54.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:54.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:54.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:54.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:54.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:54.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:54.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:54.292][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.DEBUG[2025-01-04 16:03:54.294][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:54.295][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:54.296][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
biodb.TRACE[2025-01-04 16:03:54.914][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421).
biodb.DEBUG[2025-01-04 16:03:55.265][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:55.269][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.content"
biodb.TRACE[2025-01-04 16:03:55.276][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66d999f05cd47f00d9f023cd227b9481.request"
biodb.TRACE[2025-01-04 16:03:55.281][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52421.xml"
biodb.DEBUG[2025-01-04 16:03:55.284][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:55.286][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:55.289][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:55.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:55.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:55.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:55.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:55.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:55.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:55.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:55.314][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:55.316][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:55.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.319][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:55.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:55.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.327][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:55.328][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:55.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.331][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.332][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:55.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:55.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.337][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:55.338][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:55.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.340][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.342][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:55.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:55.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.346][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:55.347][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:55.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.349][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.350][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:55.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:55.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.354][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:55.355][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:55.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.357][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.358][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:55.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:55.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.362][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:55.363][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:55.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.364][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.365][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:55.366][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:55.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.368][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.369][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:55.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:55.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.381][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:55.382][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:55.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.383][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:55.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:55.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.388][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:55.389][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:55.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.391][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.392][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:55.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:55.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.395][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:55.396][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:55.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.398][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.399][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:55.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:55.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.402][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:55.403][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:55.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.405][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.406][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:55.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:55.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:55.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:55.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:55.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:55.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:55.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:55.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:55.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:55.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:55.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:55.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:55.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:55.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:55.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:55.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:55.445][self$createEntryFromContent] Accession numbers: 52421.
biodb.TRACE[2025-01-04 16:03:55.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:55.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:55.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:55.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:55.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:55.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:55.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:55.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:55.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:55.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:55.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:55.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:55.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:55.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:55.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:55.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:55.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:55.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:55.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:55.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:55.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:55.475][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:03:55.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:55.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:55.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:55.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:55.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:55.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:55.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:55.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.492][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:55.493][private$selectFields]
biodb.TRACE[2025-01-04 16:03:55.494][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:55.495][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:55.496][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:55.497][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.498][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.499][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.500][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.501][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.503][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.504][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:55.505][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:55.506][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.506][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.508][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.509][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:55.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.521][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-01-04 16:03:55.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:55.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:55.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:55.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:55.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:55.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:55.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:55.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.542][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:55.543][private$selectFields]
biodb.TRACE[2025-01-04 16:03:55.544][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:55.545][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:55.546][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:55.547][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.547][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.549][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.550][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.551][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.553][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.553][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:55.554][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:55.555][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.556][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.558][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.559][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:55.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.570][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-01-04 16:03:55.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:55.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:55.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:55.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:55.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:55.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:55.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:55.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.587][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:55.588][private$selectFields]
biodb.TRACE[2025-01-04 16:03:55.589][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:03:55.590][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:03:55.590][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:55.591][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.592][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.594][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.595][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.596][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.597][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.598][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:55.599][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:03:55.600][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.601][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.602][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.603][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:03:55.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:55.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:55.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:55.615][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-01-04 16:03:55.616][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:03:55.616][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:03:55.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:55.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:55.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:55.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:55.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:55.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:55.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:55.628][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:03:55.631][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:55.632][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:55.634][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2025-01-04 16:03:55.994][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2025-01-04 16:03:56.693][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:56.697][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.content"
biodb.TRACE[2025-01-04 16:03:56.705][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.request"
biodb.DEBUG[2025-01-04 16:03:56.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:56.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:56.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:56.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:56.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:56.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:56.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:56.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:56.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:56.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:56.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:56.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:56.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:56.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:56.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:56.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:56.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:56.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:56.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:56.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:56.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:56.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:56.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:56.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:56.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:56.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:56.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:56.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:56.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:56.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:56.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:56.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:56.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:56.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:56.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:56.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:56.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:56.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:56.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:56.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:56.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:56.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:56.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:56.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:56.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:56.797][private$loadEntries] Creating entries from ids [1]: "65567".
biodb.DEBUG[2025-01-04 16:03:56.798][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:56.799][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65567".
biodb.TRACE[2025-01-04 16:03:56.800][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:56.801][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:56.802][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:56.803][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:56.804][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:56.805][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:56.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:56.808][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:56.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:56.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:56.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:56.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:56.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:56.816][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.DEBUG[2025-01-04 16:03:56.819][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:56.819][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:56.821][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
biodb.TRACE[2025-01-04 16:03:57.221][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567).
biodb.DEBUG[2025-01-04 16:03:57.580][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:57.585][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.content"
biodb.TRACE[2025-01-04 16:03:57.592][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7f0d7a30f02eb1e897d8c17a3958aa76.request"
biodb.TRACE[2025-01-04 16:03:57.597][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65567.xml"
biodb.DEBUG[2025-01-04 16:03:57.600][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:57.602][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:57.605][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:57.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:57.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:57.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:57.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:57.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:57.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:57.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:57.630][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:57.632][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:57.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.635][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:57.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:57.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:57.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:57.642][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:57.644][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:57.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.646][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:57.648][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:57.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:57.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:57.653][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:57.654][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:57.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.656][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:57.657][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:57.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:57.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:57.661][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:57.662][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:57.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.664][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:57.665][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:57.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:57.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:57.669][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:57.670][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:57.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.672][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:57.673][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:57.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:57.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:57.676][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:57.677][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:57.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.679][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:57.680][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:57.681][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:57.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.683][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:57.684][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:57.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:57.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:57.687][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:57.688][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:57.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.690][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:57.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:57.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:57.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:57.695][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:57.695][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:57.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.697][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:57.698][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:57.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:57.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:57.702][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:57.703][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:57.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.705][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:57.706][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:57.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:57.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:57.709][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:57.710][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:57.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.712][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:57.713][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:57.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:57.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:57.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:57.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:57.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:57.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:57.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:57.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:57.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:57.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:57.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:57.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:57.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:57.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:57.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:57.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:57.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:57.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:57.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:57.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:57.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:57.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:57.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:57.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:57.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:57.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:57.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:57.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:57.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:57.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:57.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:57.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:57.760][self$createEntryFromContent] Accession numbers: 65567.
biodb.TRACE[2025-01-04 16:03:57.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:57.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:57.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:57.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:57.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:57.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:57.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:57.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:57.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:57.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:57.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:57.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:57.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:57.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:57.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:57.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:57.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:57.781][private$loadEntries] Creating entries from ids [1]: "65576".
biodb.DEBUG[2025-01-04 16:03:57.782][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:57.783][cch$loadFileContent] Trying to load 1 files from cache: [1]: "65576".
biodb.TRACE[2025-01-04 16:03:57.784][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:57.785][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:57.786][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:57.787][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:57.788][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:57.789][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:57.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:57.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:57.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:57.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:57.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:57.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:57.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:57.800][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.DEBUG[2025-01-04 16:03:57.802][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:57.803][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:57.804][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
biodb.TRACE[2025-01-04 16:03:58.172][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576).
biodb.DEBUG[2025-01-04 16:03:58.541][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:58.545][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.content"
biodb.TRACE[2025-01-04 16:03:58.552][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/df387492c1d7c1e81f35830307d5d903.request"
biodb.TRACE[2025-01-04 16:03:58.557][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/65576.xml"
biodb.DEBUG[2025-01-04 16:03:58.560][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:58.562][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:58.565][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:58.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:58.570][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:58.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:58.581][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:58.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:58.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:58.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:58.590][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:58.592][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:58.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.595][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:58.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:58.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:58.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:58.602][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:58.604][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:58.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.606][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:58.608][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:58.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:58.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:58.612][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:58.614][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:58.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.616][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:58.617][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:58.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:58.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:58.621][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:58.622][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:58.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.624][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:58.625][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:58.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:58.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:58.629][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:58.630][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:58.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.632][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:58.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:58.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:58.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:58.637][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:58.638][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:58.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.639][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:58.640][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:58.641][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:58.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.643][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:58.644][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:58.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:58.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:58.648][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:58.648][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:58.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.650][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:58.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:58.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:58.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:58.655][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:58.656][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:58.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.657][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:58.659][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:58.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:58.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:58.666][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:58.672][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:58.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.674][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:58.675][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:58.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:58.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:58.678][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:58.679][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:58.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.681][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:58.682][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:58.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:58.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:58.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:58.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:58.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:58.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:58.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:58.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:58.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:58.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:58.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:58.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:58.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:58.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:58.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:58.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:58.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:58.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:58.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:58.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:58.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:58.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:58.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:58.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:58.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:58.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:58.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:58.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:58.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:58.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:58.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:58.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:58.721][self$createEntryFromContent] Accession numbers: 65576.
biodb.TRACE[2025-01-04 16:03:58.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:58.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:58.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:58.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:58.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:58.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:58.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:58.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:58.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:58.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:58.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:58.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:58.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:58.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:58.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:58.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:58.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:58.741][private$loadEntries] Creating entries from ids [1]: "66352".
biodb.DEBUG[2025-01-04 16:03:58.742][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:58.743][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66352".
biodb.TRACE[2025-01-04 16:03:58.745][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:58.746][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:58.746][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:58.747][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:58.748][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:58.749][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:58.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:58.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:58.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:58.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:58.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:58.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:58.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:58.760][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.DEBUG[2025-01-04 16:03:58.763][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:58.763][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:58.765][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
biodb.TRACE[2025-01-04 16:03:59.335][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352).
biodb.DEBUG[2025-01-04 16:03:59.750][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:03:59.754][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.content"
biodb.TRACE[2025-01-04 16:03:59.761][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/45b0333aa11c1e7eb4af7d2d82f453d6.request"
biodb.TRACE[2025-01-04 16:03:59.766][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66352.xml"
biodb.DEBUG[2025-01-04 16:03:59.769][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:03:59.772][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:03:59.774][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:03:59.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:59.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:59.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:59.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:59.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:59.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:59.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:03:59.799][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:59.801][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:59.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.804][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:59.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:59.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:59.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:59.812][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:59.813][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:59.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.816][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:59.817][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:03:59.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:03:59.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:59.822][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:59.824][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:59.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.826][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:59.827][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:03:59.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:03:59.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:59.831][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:59.832][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:59.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.834][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:59.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:03:59.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:03:59.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:59.839][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:59.840][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:59.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.842][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:59.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:03:59.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:03:59.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:59.855][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:59.856][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:03:59.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.858][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:59.859][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:59.860][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:59.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.861][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:59.862][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:03:59.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:03:59.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:59.866][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:59.867][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:59.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.868][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:59.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:59.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:59.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:59.873][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:59.874][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:59.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.876][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:59.877][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:03:59.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:03:59.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:59.880][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:59.881][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:59.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.883][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:59.884][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:03:59.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:03:59.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:59.887][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:59.888][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:59.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.890][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:59.891][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:03:59.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:03:59.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:59.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:59.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:59.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:59.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:59.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:59.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:59.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:59.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:59.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:59.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:03:59.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:03:59.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:59.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:59.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:59.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:59.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:59.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:59.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:59.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:59.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:59.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:59.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:59.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:59.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:59.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:59.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:59.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:59.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:03:59.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:03:59.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:59.929][self$createEntryFromContent] Accession numbers: 66352.
biodb.TRACE[2025-01-04 16:03:59.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:59.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:59.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:59.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:59.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:59.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:03:59.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:59.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:03:59.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:03:59.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:03:59.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:59.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:59.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:59.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:59.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:59.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:59.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:59.950][private$loadEntries] Creating entries from ids [1]: "67567".
biodb.DEBUG[2025-01-04 16:03:59.951][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:03:59.952][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67567".
biodb.TRACE[2025-01-04 16:03:59.953][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:03:59.954][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:03:59.955][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:03:59.956][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:03:59.957][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:03:59.958][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:03:59.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:03:59.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:03:59.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:03:59.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:03:59.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:03:59.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:03:59.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:03:59.969][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.DEBUG[2025-01-04 16:03:59.971][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:03:59.972][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:03:59.973][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
biodb.TRACE[2025-01-04 16:04:00.546][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567).
biodb.DEBUG[2025-01-04 16:04:00.906][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:04:00.909][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.content"
biodb.TRACE[2025-01-04 16:04:00.914][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ef82f494f4fdd41c2bb93aa0869ad73e.request"
biodb.TRACE[2025-01-04 16:04:00.917][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67567.xml"
biodb.DEBUG[2025-01-04 16:04:00.919][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:04:00.921][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:04:00.923][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:04:00.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:00.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:00.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:00.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:00.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:00.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:00.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:00.942][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:00.943][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:00.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:00.946][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:00.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:00.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:00.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:00.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:00.963][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:00.964][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:00.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:00.966][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:00.967][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:00.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:00.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:00.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:00.972][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:00.973][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:00.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:00.975][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:00.976][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:00.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:00.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:00.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:00.980][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:00.981][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:00.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:00.982][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:00.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:00.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:00.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:00.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:00.987][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:00.988][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:00.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:00.989][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:00.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:00.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:00.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:00.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:00.994][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:00.995][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:00.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:00.997][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:00.998][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:00.999][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:00.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:01.000][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:01.001][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:01.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:01.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:01.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:01.005][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:01.006][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:01.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:01.007][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:01.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:01.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:01.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:01.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:01.012][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:01.013][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:01.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:01.015][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:01.016][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:01.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:01.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:01.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:01.019][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:01.020][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:01.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:01.022][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:01.023][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:01.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:01.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:01.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:01.026][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:01.027][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:01.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:01.029][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:01.030][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:01.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:01.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:01.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:01.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:01.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:01.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:01.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:01.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:01.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:01.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:01.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:01.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:01.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:01.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:01.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:01.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:01.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:01.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:01.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:01.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:01.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:01.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:01.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:01.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:01.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:01.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:01.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:01.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:01.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:01.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:01.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:01.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:01.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:01.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:01.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:01.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:01.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:01.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:01.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:01.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:01.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:01.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:01.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:01.068][self$createEntryFromContent] Accession numbers: 67567.
biodb.TRACE[2025-01-04 16:04:01.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:01.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:01.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:01.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:01.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:01.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:01.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:01.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:01.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:01.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:01.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:01.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:01.080][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:01.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:01.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:01.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:01.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:01.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:01.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:01.089][private$loadEntries] Creating entries from ids [1]: "67693".
biodb.DEBUG[2025-01-04 16:04:01.090][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:04:01.091][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67693".
biodb.TRACE[2025-01-04 16:04:01.092][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:04:01.093][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:04:01.094][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:04:01.095][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:04:01.096][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:04:01.097][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:04:01.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:01.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:01.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:01.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:01.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:01.106][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:01.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:01.108][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.DEBUG[2025-01-04 16:04:01.115][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:04:01.116][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:04:01.117][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
biodb.TRACE[2025-01-04 16:04:01.783][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693).
biodb.DEBUG[2025-01-04 16:04:02.136][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:04:02.139][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.content"
biodb.TRACE[2025-01-04 16:04:02.144][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/007181120197262f6a39eff57d7aa092.request"
biodb.TRACE[2025-01-04 16:04:02.148][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67693.xml"
biodb.DEBUG[2025-01-04 16:04:02.150][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:04:02.152][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:04:02.153][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:04:02.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:02.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:02.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:02.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:02.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:02.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:02.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:02.172][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:02.173][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:02.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.176][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:02.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:02.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:02.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:02.184][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:02.185][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:02.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.187][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:02.189][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:02.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:02.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:02.194][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:02.195][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:02.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.197][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:02.198][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:02.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:02.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:02.202][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:02.204][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:02.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.205][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:02.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:02.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:02.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:02.210][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:02.211][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:02.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.213][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:02.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:02.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:02.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:02.218][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:02.219][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:02.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.220][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:02.221][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:02.222][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:02.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.224][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:02.225][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:02.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:02.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:02.228][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:02.229][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:02.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.231][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:02.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:02.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:02.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:02.236][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:02.237][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:02.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.238][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:02.239][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:02.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:02.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:02.243][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:02.244][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:02.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.246][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:02.247][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:02.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:02.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:02.250][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:02.251][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:02.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.253][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:02.254][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:02.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:02.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:02.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:02.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:02.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:02.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:02.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:02.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:02.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:02.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:02.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:02.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:02.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:02.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:02.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:02.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:02.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:02.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:02.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:02.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:02.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:02.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:02.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:02.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:02.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:02.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:02.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:02.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:02.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:02.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:02.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:02.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:02.293][self$createEntryFromContent] Accession numbers: 67693.
biodb.TRACE[2025-01-04 16:04:02.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:02.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:02.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:02.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:02.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:02.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:02.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:02.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:02.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:02.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:02.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:02.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:02.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:02.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:02.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:02.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:02.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:02.321][private$loadEntries] Creating entries from ids [1]: "67700".
biodb.DEBUG[2025-01-04 16:04:02.322][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:04:02.324][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67700".
biodb.TRACE[2025-01-04 16:04:02.325][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:04:02.326][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:04:02.327][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:04:02.328][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:04:02.329][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:04:02.329][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:04:02.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:02.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:02.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:02.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:02.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:02.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:02.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:02.341][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.DEBUG[2025-01-04 16:04:02.343][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:04:02.344][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:04:02.345][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
biodb.TRACE[2025-01-04 16:04:02.715][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700).
biodb.DEBUG[2025-01-04 16:04:03.072][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:04:03.074][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.content"
biodb.TRACE[2025-01-04 16:04:03.077][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e41afa9432b74fa2b22a0c53e84c091a.request"
biodb.TRACE[2025-01-04 16:04:03.079][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67700.xml"
biodb.DEBUG[2025-01-04 16:04:03.081][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:04:03.082][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:04:03.083][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:04:03.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:03.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:03.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:03.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:03.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:03.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:03.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:03.094][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:03.095][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:03.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.097][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:03.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:03.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:03.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:03.101][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:03.102][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:03.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.104][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:03.105][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:03.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:03.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:03.108][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:03.109][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:03.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.111][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:03.112][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:03.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:03.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:03.116][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:03.117][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:03.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.118][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:03.119][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:03.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:03.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:03.123][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:03.124][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:03.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.125][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:03.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:03.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:03.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:03.130][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:03.131][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:03.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.132][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:03.133][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:03.134][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:03.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.136][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:03.137][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:03.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:03.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:03.141][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:03.141][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:03.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.143][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:03.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:03.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:03.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:03.148][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:03.149][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:03.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.150][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:03.151][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:03.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:03.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:03.155][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:03.156][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:03.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.158][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:03.159][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:03.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:03.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:03.162][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:03.163][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:03.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.165][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:03.166][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:03.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:03.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:03.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:03.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:03.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:03.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:03.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:03.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:03.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:03.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:03.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:03.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:03.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:03.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:03.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:03.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:03.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:03.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:03.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:03.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:03.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:03.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:03.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:03.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:03.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:03.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:03.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:03.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:03.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:03.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:03.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:03.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:03.213][self$createEntryFromContent] Accession numbers: 67700.
biodb.TRACE[2025-01-04 16:04:03.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:03.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:03.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:03.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:03.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:03.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:03.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:03.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:03.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:03.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:03.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:03.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:03.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:03.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:03.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:03.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:03.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:03.233][private$loadEntries] Creating entries from ids [1]: "67701".
biodb.DEBUG[2025-01-04 16:04:03.234][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:04:03.235][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67701".
biodb.TRACE[2025-01-04 16:04:03.236][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:04:03.237][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:04:03.238][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:04:03.239][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:04:03.240][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:04:03.241][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:04:03.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:03.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:03.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:03.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:03.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:03.250][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:03.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:03.252][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.DEBUG[2025-01-04 16:04:03.254][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:04:03.255][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:04:03.256][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
biodb.TRACE[2025-01-04 16:04:03.622][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701).
biodb.DEBUG[2025-01-04 16:04:03.977][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:04:03.981][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.content"
biodb.TRACE[2025-01-04 16:04:03.988][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ca9443fe11bfb8fe207e2797d18dbba3.request"
biodb.TRACE[2025-01-04 16:04:03.993][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67701.xml"
biodb.DEBUG[2025-01-04 16:04:03.996][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:04:03.999][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:04:04.001][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:04:04.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:04.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:04.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:04.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:04.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:04.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:04.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:04.026][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:04.028][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:04.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.031][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:04.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:04.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.039][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:04.041][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:04.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.043][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.045][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:04.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:04.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.049][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:04.051][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:04.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.053][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.054][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:04.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:04.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.058][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:04.059][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:04.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.061][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.062][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:04.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:04.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.066][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:04.067][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:04.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.069][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:04.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:04.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.074][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:04.075][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:04.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.076][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.077][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:04.078][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:04.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.080][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.081][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:04.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:04.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.085][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:04.086][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:04.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.087][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:04.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:04.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.092][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:04.093][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:04.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.095][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.096][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:04.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:04.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.099][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:04.100][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:04.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.110][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.111][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:04.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:04.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.115][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:04.116][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:04.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.117][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.118][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:04.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:04.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:04.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:04.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:04.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:04.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:04.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:04.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:04.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:04.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:04.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:04.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:04.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:04.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:04.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:04.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:04.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:04.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:04.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:04.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:04.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:04.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:04.157][self$createEntryFromContent] Accession numbers: 67701.
biodb.TRACE[2025-01-04 16:04:04.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:04.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:04.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:04.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:04.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:04.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:04.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:04.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:04.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:04.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:04.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:04.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:04.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:04.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:04.177][private$loadEntries] Creating entries from ids [1]: "67705".
biodb.DEBUG[2025-01-04 16:04:04.178][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:04:04.179][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67705".
biodb.TRACE[2025-01-04 16:04:04.180][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:04:04.181][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:04:04.182][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:04:04.183][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:04:04.184][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:04:04.185][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:04:04.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:04.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:04.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:04.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:04.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:04.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:04.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:04.196][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.DEBUG[2025-01-04 16:04:04.198][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:04:04.199][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:04:04.200][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
biodb.TRACE[2025-01-04 16:04:04.569][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705).
biodb.DEBUG[2025-01-04 16:04:04.925][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:04:04.929][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.content"
biodb.TRACE[2025-01-04 16:04:04.936][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/19583a5be2f48ffe4ea86ed642cbc7df.request"
biodb.TRACE[2025-01-04 16:04:04.941][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67705.xml"
biodb.DEBUG[2025-01-04 16:04:04.944][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:04:04.947][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:04:04.949][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:04:04.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:04.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:04.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:04.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:04.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:04.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:04.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:04.975][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:04.976][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:04.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.979][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:04.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:04.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.987][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:04.988][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:04.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.991][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.992][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:04.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:04.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:04.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:04.997][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:04.999][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:05.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:05.001][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:05.002][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:05.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:05.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:05.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:05.006][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:05.007][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:05.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:05.009][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:05.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:05.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:05.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:05.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:05.014][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:05.015][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:05.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:05.017][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:05.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:05.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:05.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:05.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:05.030][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:05.031][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:05.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:05.033][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:05.034][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:05.035][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:05.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:05.036][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:05.037][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:05.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:05.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:05.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:05.041][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:05.042][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:05.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:05.043][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:05.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:05.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:05.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:05.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:05.048][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:05.049][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:05.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:05.050][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:05.052][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:05.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:05.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:05.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:05.055][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:05.056][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:05.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:05.058][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:05.059][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:05.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:05.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:05.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:05.063][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:05.063][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:05.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:05.065][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:05.066][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:05.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:05.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:05.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:05.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:05.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:05.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:05.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:05.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:05.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:05.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:05.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:05.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:05.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:05.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:05.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:05.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:05.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:05.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:05.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:05.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:05.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:05.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:05.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:05.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:05.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:05.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:05.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:05.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:05.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:05.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:05.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:05.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:05.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:05.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:05.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:05.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:05.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:05.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:05.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:05.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:05.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:05.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:05.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:05.104][self$createEntryFromContent] Accession numbers: 67705.
biodb.TRACE[2025-01-04 16:04:05.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:05.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:05.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:05.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:05.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:05.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:05.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:05.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:05.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:05.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:05.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:05.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:05.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:05.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:05.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:05.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:05.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:05.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:05.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:05.125][private$loadEntries] Creating entries from ids [1]: "75265".
biodb.DEBUG[2025-01-04 16:04:05.125][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:04:05.127][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75265".
biodb.TRACE[2025-01-04 16:04:05.128][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:04:05.129][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:04:05.130][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:04:05.131][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:04:05.132][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:04:05.132][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:04:05.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:05.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:05.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:05.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:05.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:05.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:05.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:05.144][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.DEBUG[2025-01-04 16:04:05.146][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:04:05.147][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:04:05.148][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
biodb.TRACE[2025-01-04 16:04:05.524][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265).
biodb.DEBUG[2025-01-04 16:04:06.901][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:04:06.903][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.content"
biodb.TRACE[2025-01-04 16:04:06.906][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d89a3a12f8b9f5e8203e72f55b0016ed.request"
biodb.TRACE[2025-01-04 16:04:06.908][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75265.xml"
biodb.DEBUG[2025-01-04 16:04:06.910][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:04:06.911][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:04:06.912][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:04:06.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:06.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:06.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:06.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:06.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:06.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:06.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:06.924][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:06.925][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:06.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:06.927][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:06.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:06.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:06.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:06.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:06.941][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:06.942][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:06.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:06.944][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:06.945][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:06.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:06.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:06.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:06.948][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:06.949][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:06.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:06.951][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:06.952][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:06.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:06.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:06.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:06.956][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:06.957][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:06.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:06.958][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:06.959][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:06.960][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:06.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:06.962][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:06.963][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:06.964][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:06.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:06.966][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:06.967][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:06.968][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:06.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:06.969][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:06.970][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:06.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:06.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:06.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:06.974][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:06.975][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:06.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:06.976][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:06.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:06.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:06.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:06.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:06.981][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:06.982][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:06.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:06.984][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:06.985][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:06.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:06.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:06.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:06.988][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:06.989][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:06.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:06.991][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:06.992][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:06.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:06.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:06.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:06.995][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:06.996][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:06.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:06.998][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:06.999][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:07.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:07.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:07.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:07.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:07.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:07.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:07.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:07.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:07.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:07.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:07.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:07.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:07.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:07.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:07.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:07.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:07.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:07.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:07.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:07.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:07.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:07.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:07.037][self$createEntryFromContent] Accession numbers: 75265.
biodb.TRACE[2025-01-04 16:04:07.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:07.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:07.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:07.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:07.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:07.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:07.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:07.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:07.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:07.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:07.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:07.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:07.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:07.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:07.058][private$loadEntries] Creating entries from ids [1]: "77370".
biodb.DEBUG[2025-01-04 16:04:07.059][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:04:07.060][cch$loadFileContent] Trying to load 1 files from cache: [1]: "77370".
biodb.TRACE[2025-01-04 16:04:07.061][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:04:07.062][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:04:07.063][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:04:07.064][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:04:07.065][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:04:07.066][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:04:07.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:07.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:07.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:07.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:07.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:07.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:07.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:07.077][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.DEBUG[2025-01-04 16:04:07.080][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:04:07.081][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:04:07.082][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
biodb.TRACE[2025-01-04 16:04:07.448][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370).
biodb.DEBUG[2025-01-04 16:04:07.819][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:04:07.822][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.content"
biodb.TRACE[2025-01-04 16:04:07.826][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c00fcc12163fc12434466e6319d4b9a8.request"
biodb.TRACE[2025-01-04 16:04:07.828][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/77370.xml"
biodb.DEBUG[2025-01-04 16:04:07.829][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:04:07.830][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:04:07.831][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:04:07.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:07.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:07.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:07.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:07.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:07.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:07.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:07.843][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:07.844][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:07.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.846][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:07.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:07.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.851][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:07.852][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:07.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.854][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.855][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:07.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:07.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.859][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:07.860][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:07.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.861][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.862][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:07.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:07.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.866][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:07.867][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:07.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.869][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.870][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:07.871][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:07.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.872][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.873][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:07.874][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:07.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.876][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.877][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:07.878][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:07.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.880][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.881][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:07.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:07.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.884][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:07.885][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:07.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.887][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:07.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:07.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.891][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:07.892][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:07.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.894][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.895][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:07.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:07.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.899][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:07.899][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:07.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.901][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.902][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:07.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:07.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.906][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:07.907][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:07.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.908][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.909][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:07.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:07.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:07.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:07.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:07.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:07.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:07.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:07.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:07.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:07.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:07.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:07.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:07.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:07.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:07.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:07.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:07.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:07.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:07.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:07.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:07.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:07.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:07.948][self$createEntryFromContent] Accession numbers: 77370.
biodb.TRACE[2025-01-04 16:04:07.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:07.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:07.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.952][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:07.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:07.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:07.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:07.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:07.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:07.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:07.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:07.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:07.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:07.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:07.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:07.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:07.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:07.968][private$loadEntries] Creating entries from ids [1]: "79074".
biodb.DEBUG[2025-01-04 16:04:07.969][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:04:07.971][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79074".
biodb.TRACE[2025-01-04 16:04:07.981][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:04:07.982][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:04:07.983][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:04:07.984][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:04:07.985][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:04:07.986][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:04:07.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:07.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:07.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:07.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:07.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:07.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:07.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:07.997][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.DEBUG[2025-01-04 16:04:08.000][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:04:08.001][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:04:08.002][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
biodb.TRACE[2025-01-04 16:04:08.371][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074).
biodb.DEBUG[2025-01-04 16:04:08.719][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:04:08.721][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.content"
biodb.TRACE[2025-01-04 16:04:08.724][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/9d103521a9057f87b1d7f6dac467847d.request"
biodb.TRACE[2025-01-04 16:04:08.726][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79074.xml"
biodb.DEBUG[2025-01-04 16:04:08.728][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:04:08.729][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:04:08.730][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:04:08.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:08.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:08.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:08.737][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:08.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:08.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:08.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:08.742][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:08.743][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:08.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.745][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:08.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:08.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:08.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:08.750][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:08.751][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:08.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.752][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:08.753][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:08.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:08.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:08.757][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:08.758][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:08.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.760][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:08.761][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:08.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:08.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:08.765][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:08.766][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:08.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.768][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:08.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:08.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:08.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:08.772][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:08.773][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:08.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.775][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:08.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:08.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:08.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:08.780][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:08.780][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:08.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.782][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:08.783][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:08.784][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:08.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.786][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:08.787][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:08.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:08.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:08.790][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:08.791][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:08.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.793][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:08.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:08.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:08.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:08.797][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:08.798][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:08.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.800][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:08.801][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:08.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:08.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:08.805][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:08.806][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:08.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.807][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:08.808][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:08.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:08.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:08.812][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:08.813][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:08.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.814][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:08.815][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:08.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:08.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:08.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:08.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:08.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:08.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:08.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:08.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:08.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:08.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:08.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:08.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:08.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:08.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:08.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:08.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:08.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:08.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:08.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:08.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:08.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:08.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:08.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:08.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:08.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:08.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:08.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:08.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:08.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:08.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:08.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:08.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:08.863][self$createEntryFromContent] Accession numbers: 79074.
biodb.TRACE[2025-01-04 16:04:08.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:08.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:08.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:08.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:08.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:08.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:08.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:08.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:08.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:08.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:08.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:08.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:08.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:08.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:08.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:08.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:08.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:08.883][private$loadEntries] Creating entries from ids [1]: "79302".
biodb.DEBUG[2025-01-04 16:04:08.884][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:04:08.885][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79302".
biodb.TRACE[2025-01-04 16:04:08.886][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:04:08.887][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:04:08.888][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:04:08.889][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:04:08.890][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:04:08.891][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:04:08.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:08.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:08.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:08.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:08.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:08.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:08.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:08.902][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.DEBUG[2025-01-04 16:04:08.904][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:04:08.905][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:04:08.906][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
biodb.TRACE[2025-01-04 16:04:09.266][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302).
biodb.DEBUG[2025-01-04 16:04:09.622][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:04:09.624][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.content"
biodb.TRACE[2025-01-04 16:04:09.627][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/db109891c430ecee6c4d31019e936bb4.request"
biodb.TRACE[2025-01-04 16:04:09.629][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79302.xml"
biodb.DEBUG[2025-01-04 16:04:09.630][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:04:09.632][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:04:09.633][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:04:09.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:09.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:09.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:09.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:09.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:09.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:09.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:09.645][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:09.646][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:09.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.647][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:09.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:09.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:09.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:09.652][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:09.653][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:09.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.655][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:09.656][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:09.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:09.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:09.660][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:09.661][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:09.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.663][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:09.664][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:09.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:09.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:09.668][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:09.669][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:09.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.670][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:09.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:09.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:09.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:09.675][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:09.676][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:09.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.678][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:09.679][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:09.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:09.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:09.682][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:09.683][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:09.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.685][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:09.686][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:09.687][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:09.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.689][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:09.690][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:09.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:09.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:09.693][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:09.694][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:09.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.696][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:09.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:09.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:09.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:09.701][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:09.702][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:09.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.703][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:09.704][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:09.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:09.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:09.708][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:09.709][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:09.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.711][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:09.712][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:09.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:09.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:09.715][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:09.716][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:09.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.718][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:09.719][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:09.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:09.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:09.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:09.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:09.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:09.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:09.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:09.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:09.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:09.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:09.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:09.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:09.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:09.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:09.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:09.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:09.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:09.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:09.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:09.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:09.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:09.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:09.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:09.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:09.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:09.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:09.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:09.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:09.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:09.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:09.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:09.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:09.766][self$createEntryFromContent] Accession numbers: 79302.
biodb.TRACE[2025-01-04 16:04:09.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:09.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:09.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:09.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:09.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:09.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:09.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:09.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:09.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:09.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:09.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:09.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:09.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:09.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:09.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:09.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:09.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:09.786][private$loadEntries] Creating entries from ids [1]: "84164".
biodb.DEBUG[2025-01-04 16:04:09.787][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:04:09.789][cch$loadFileContent] Trying to load 1 files from cache: [1]: "84164".
biodb.TRACE[2025-01-04 16:04:09.790][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:04:09.791][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:04:09.792][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:04:09.793][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:04:09.793][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:04:09.794][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:04:09.797][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:09.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:09.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:09.802][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:09.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:09.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:09.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:09.805][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.DEBUG[2025-01-04 16:04:09.808][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:04:09.809][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:04:09.810][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
biodb.TRACE[2025-01-04 16:04:10.173][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164).
biodb.DEBUG[2025-01-04 16:04:10.524][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:04:10.526][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.content"
biodb.TRACE[2025-01-04 16:04:10.529][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5878d01d3db7a255abcfdf35c60dd985.request"
biodb.TRACE[2025-01-04 16:04:10.531][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/84164.xml"
biodb.DEBUG[2025-01-04 16:04:10.532][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:04:10.533][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:04:10.535][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:04:10.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:10.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:10.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:10.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:10.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:10.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:10.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:10.547][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:10.548][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:10.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.549][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:10.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:10.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:10.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:10.554][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:10.555][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:10.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.557][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:10.558][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:10.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:10.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:10.562][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:10.563][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:10.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.565][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:10.566][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:10.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:10.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:10.570][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:10.571][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:10.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.573][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:10.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:10.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:10.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:10.578][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:10.579][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:10.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.580][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:10.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:10.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:10.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:10.585][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:10.586][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:10.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.588][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:10.589][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:10.590][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:10.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.591][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:10.592][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:10.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:10.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:10.596][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:10.601][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:10.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.607][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:10.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:10.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:10.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:10.611][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:10.612][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:10.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.614][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:10.615][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:10.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:10.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:10.619][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:10.620][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:10.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.621][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:10.622][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:10.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:10.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:10.626][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:10.627][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:10.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.628][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:10.629][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:10.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:10.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:10.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:10.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:10.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:10.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:10.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:10.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:10.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:10.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:10.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:10.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:10.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:10.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:10.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:10.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:10.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:10.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:10.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:10.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:10.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:10.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:10.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:10.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:10.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:10.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:10.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:10.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:10.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:10.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:10.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:10.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:10.668][self$createEntryFromContent] Accession numbers: 84164.
biodb.TRACE[2025-01-04 16:04:10.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:10.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:10.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:10.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:10.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:10.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:10.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:10.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:10.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:10.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:10.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:10.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:10.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:10.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:10.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:10.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:10.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:10.688][private$loadEntries] Creating entries from ids [1]: "132314".
biodb.DEBUG[2025-01-04 16:04:10.689][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:04:10.691][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132314".
biodb.TRACE[2025-01-04 16:04:10.692][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:04:10.693][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:04:10.694][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:04:10.694][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:04:10.695][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:04:10.696][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:04:10.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:10.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:10.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:10.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:10.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:10.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:10.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:10.707][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.DEBUG[2025-01-04 16:04:10.710][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:04:10.711][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:04:10.712][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
biodb.TRACE[2025-01-04 16:04:11.090][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314).
biodb.DEBUG[2025-01-04 16:04:11.445][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:04:11.447][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.content"
biodb.TRACE[2025-01-04 16:04:11.450][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/faff8e4827734119a684907f214879a2.request"
biodb.TRACE[2025-01-04 16:04:11.453][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132314.xml"
biodb.DEBUG[2025-01-04 16:04:11.454][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:04:11.455][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:04:11.456][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:04:11.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:11.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:11.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:11.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:11.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:11.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:11.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:11.469][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:11.470][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:11.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.472][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:11.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:11.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:11.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:11.477][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:11.478][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:11.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.479][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:11.481][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:11.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:11.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:11.484][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:11.485][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:11.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.487][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:11.488][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:11.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:11.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:11.501][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:11.502][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:11.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.503][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:11.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:11.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:11.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:11.508][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:11.509][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:11.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.511][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:11.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:11.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:11.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:11.515][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:11.516][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:11.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.518][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:11.519][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:11.520][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:11.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.521][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:11.522][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:11.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:11.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:11.526][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:11.527][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:11.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.529][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:11.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:11.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:11.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:11.533][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:11.534][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:11.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.536][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:11.537][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:11.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:11.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:11.541][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:11.541][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:11.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.543][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:11.544][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:11.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:11.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:11.548][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:11.549][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:11.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.550][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:11.551][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:11.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:11.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:11.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:11.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:11.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:11.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:11.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:11.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:11.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:11.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:11.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:11.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:11.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:11.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:11.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:11.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:11.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:11.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:11.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:11.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:11.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:11.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:11.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:11.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:11.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:11.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:11.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:11.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:11.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:11.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:11.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:11.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:11.589][self$createEntryFromContent] Accession numbers: 132314.
biodb.TRACE[2025-01-04 16:04:11.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:11.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:11.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:11.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:11.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:11.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:11.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:11.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:11.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:11.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:11.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:11.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:11.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:11.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:11.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:11.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:11.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:11.610][private$loadEntries] Creating entries from ids [1]: "132338".
biodb.DEBUG[2025-01-04 16:04:11.611][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:04:11.612][cch$loadFileContent] Trying to load 1 files from cache: [1]: "132338".
biodb.TRACE[2025-01-04 16:04:11.613][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:04:11.614][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:04:11.615][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:04:11.616][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:04:11.617][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:04:11.618][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:04:11.620][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:11.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:11.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:11.626][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:11.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:11.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:11.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:11.629][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.DEBUG[2025-01-04 16:04:11.631][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:04:11.632][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:04:11.634][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
biodb.TRACE[2025-01-04 16:04:11.998][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338).
biodb.DEBUG[2025-01-04 16:04:12.345][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:04:12.347][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.content"
biodb.TRACE[2025-01-04 16:04:12.350][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ab2b9171a775a690a32a30e73cf2a1c.request"
biodb.TRACE[2025-01-04 16:04:12.353][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/132338.xml"
biodb.DEBUG[2025-01-04 16:04:12.354][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:04:12.355][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:04:12.360][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:04:12.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:12.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:12.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:12.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:12.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:12.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:12.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:12.377][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:12.378][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:12.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.379][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:12.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:12.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:12.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:12.384][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:12.385][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:12.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.387][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:12.388][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:12.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:12.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:12.392][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:12.393][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:12.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.395][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:12.396][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:12.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:12.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:12.400][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:12.401][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:12.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.402][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:12.403][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:12.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:12.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:12.407][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:12.408][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:12.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.409][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:12.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:12.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:12.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:12.414][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:12.415][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:12.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.417][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:12.418][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:12.419][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:12.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.420][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:12.421][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:12.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:12.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:12.425][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:12.426][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:12.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.427][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:12.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:12.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:12.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:12.432][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:12.433][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:12.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.434][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:12.436][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:12.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:12.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:12.439][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:12.440][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:12.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.442][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:12.443][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:12.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:12.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:12.446][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:12.447][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:12.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.449][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:12.450][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:12.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:12.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:12.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:12.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:12.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:12.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:12.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:12.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:12.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:12.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:12.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:12.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:12.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:12.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:12.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:12.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:12.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:12.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:12.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:12.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:12.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:12.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:12.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:12.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:12.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:12.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:12.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:12.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:12.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:12.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:12.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:12.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:12.488][self$createEntryFromContent] Accession numbers: 132338.
biodb.TRACE[2025-01-04 16:04:12.489][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:12.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:12.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:12.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:12.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:12.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:12.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:12.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:12.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:12.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:12.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:12.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:12.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:12.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:12.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:12.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:12.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:12.509][private$loadEntries] Creating entries from ids [1]: "139019".
biodb.DEBUG[2025-01-04 16:04:12.510][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:04:12.511][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139019".
biodb.TRACE[2025-01-04 16:04:12.512][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:04:12.513][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:04:12.514][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:04:12.519][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:04:12.520][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:04:12.521][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:04:12.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:12.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:12.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:12.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:12.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:12.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:12.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:12.532][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.DEBUG[2025-01-04 16:04:12.534][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:04:12.535][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:04:12.537][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
biodb.TRACE[2025-01-04 16:04:12.920][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019).
biodb.DEBUG[2025-01-04 16:04:13.267][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:04:13.269][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.content"
biodb.TRACE[2025-01-04 16:04:13.272][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c6e6f1783364d5307c1e22caca9f3324.request"
biodb.TRACE[2025-01-04 16:04:13.274][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139019.xml"
biodb.DEBUG[2025-01-04 16:04:13.276][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:04:13.277][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:04:13.278][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:04:13.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:13.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:13.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:13.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:13.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:13.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:13.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:13.290][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:13.291][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:13.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.293][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:13.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:13.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:13.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:13.298][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:13.299][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:13.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.301][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:13.302][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:13.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:13.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:13.305][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:13.306][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:13.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.308][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:13.309][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:13.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:13.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:13.313][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:13.314][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:13.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.316][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:13.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:13.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:13.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:13.320][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:13.321][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:13.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.323][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:13.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:13.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:13.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:13.327][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:13.328][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:13.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.330][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:13.331][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:13.332][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:13.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.334][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:13.335][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:13.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:13.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:13.338][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:13.339][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:13.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.341][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:13.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:13.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:13.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:13.345][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:13.346][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:13.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.348][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:13.349][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:13.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:13.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:13.353][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:13.353][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:13.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.355][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:13.356][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:13.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:13.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:13.360][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:13.361][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:13.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.362][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:13.363][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:13.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:13.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:13.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:13.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:13.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:13.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:13.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:13.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:13.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:13.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:13.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:13.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:13.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:13.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:13.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:13.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:13.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:13.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:13.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:13.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:13.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:13.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:13.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:13.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:13.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:13.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:13.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:13.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:13.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:13.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:13.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:13.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:13.411][self$createEntryFromContent] Accession numbers: 139019.
biodb.TRACE[2025-01-04 16:04:13.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:13.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:13.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:13.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:13.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:13.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:13.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:13.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:13.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:13.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:13.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:13.423][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:13.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:13.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:13.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:13.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:13.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:13.431][private$loadEntries] Creating entries from ids [1]: "139367".
biodb.DEBUG[2025-01-04 16:04:13.432][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:04:13.433][cch$loadFileContent] Trying to load 1 files from cache: [1]: "139367".
biodb.TRACE[2025-01-04 16:04:13.434][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:04:13.435][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:04:13.436][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:04:13.437][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:04:13.438][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:04:13.439][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:04:13.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:13.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:13.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:13.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:13.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:13.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:13.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:13.450][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.DEBUG[2025-01-04 16:04:13.452][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:04:13.453][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:04:13.454][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
biodb.TRACE[2025-01-04 16:04:13.825][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367).
biodb.DEBUG[2025-01-04 16:04:14.181][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:04:14.184][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.content"
biodb.TRACE[2025-01-04 16:04:14.187][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ad7d38680a9a89d96fe967aa23d4180d.request"
biodb.TRACE[2025-01-04 16:04:14.189][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/139367.xml"
biodb.DEBUG[2025-01-04 16:04:14.190][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:04:14.192][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:04:14.193][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:04:14.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:14.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:14.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:14.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:14.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:14.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:14.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:14.205][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:14.206][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:14.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.208][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:14.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:14.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:14.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:14.213][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:14.214][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:14.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.216][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:14.217][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:14.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:14.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:14.221][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:14.222][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:14.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.224][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:14.225][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:14.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:14.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:14.229][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:14.230][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:14.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.231][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:14.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:14.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:14.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:14.236][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:14.237][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:14.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.239][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:14.240][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:14.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:14.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:14.244][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:14.245][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:14.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.247][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:14.248][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:14.249][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:14.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.251][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:14.252][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:14.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:14.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:14.256][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:14.257][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:14.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.259][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:14.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:14.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:14.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:14.264][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:14.265][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:14.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.267][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:14.268][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:14.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:14.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:14.272][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:14.273][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:14.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.275][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:14.276][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:14.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:14.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:14.280][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:14.281][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:14.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.283][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:14.284][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:14.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:14.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:14.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:14.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:14.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:14.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:14.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:14.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:14.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:14.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:14.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:14.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:14.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:14.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:14.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:14.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:14.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:14.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:14.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:14.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:14.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:14.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:14.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:14.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:14.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:14.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:14.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:14.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:14.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:14.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:14.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:14.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:14.337][self$createEntryFromContent] Accession numbers: 139367.
biodb.TRACE[2025-01-04 16:04:14.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:14.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:14.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:14.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:14.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:14.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:14.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:14.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:14.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:14.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:14.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:14.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:14.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:14.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:14.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:14.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:14.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:14.360][private$loadEntries] Creating entries from ids [1]: "145029".
biodb.DEBUG[2025-01-04 16:04:14.361][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:04:14.362][cch$loadFileContent] Trying to load 1 files from cache: [1]: "145029".
biodb.TRACE[2025-01-04 16:04:14.364][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:04:14.365][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:04:14.366][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:04:14.367][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:04:14.368][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:04:14.368][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:04:14.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:14.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:14.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:14.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:14.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:14.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:14.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:14.381][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.DEBUG[2025-01-04 16:04:14.384][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:04:14.385][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:04:14.386][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
biodb.TRACE[2025-01-04 16:04:14.761][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029).
biodb.DEBUG[2025-01-04 16:04:15.184][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:04:15.186][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.content"
biodb.TRACE[2025-01-04 16:04:15.189][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/6db4642c7bdbd10dc105b3470394caa5.request"
biodb.TRACE[2025-01-04 16:04:15.191][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/145029.xml"
biodb.DEBUG[2025-01-04 16:04:15.193][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:04:15.194][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:04:15.195][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:04:15.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:15.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:15.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:15.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:15.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:15.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:15.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:15.208][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:15.209][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:15.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.210][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:15.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:15.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:15.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:15.215][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:15.216][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:15.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.218][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:15.219][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:15.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:15.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:15.223][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:15.224][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:15.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.226][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:15.227][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:15.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:15.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:15.231][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:15.232][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:15.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.234][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:15.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:15.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:15.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:15.239][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:15.240][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:15.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.241][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:15.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:15.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:15.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:15.246][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:15.247][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:15.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.249][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:15.250][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:15.251][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:15.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.252][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:15.254][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:15.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:15.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:15.257][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:15.268][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:15.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.270][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:15.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:15.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:15.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:15.275][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:15.275][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:15.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.277][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:15.278][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:15.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:15.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:15.282][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:15.283][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:15.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.284][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:15.286][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:15.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:15.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:15.289][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:15.290][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:15.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.292][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:15.293][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:15.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:15.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:15.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:15.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:15.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:15.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:15.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:15.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:15.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:15.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:15.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:15.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:15.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:15.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:15.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:15.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:15.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:15.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:15.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:15.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:15.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:15.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:15.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:15.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:15.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:15.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:15.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:15.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:15.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:15.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:15.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:15.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:15.331][self$createEntryFromContent] Accession numbers: 145029.
biodb.TRACE[2025-01-04 16:04:15.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:15.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:15.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:15.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:15.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:15.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:15.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:15.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:15.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:15.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:15.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:15.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:15.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:15.348][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:15.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:15.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:15.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:15.351][private$loadEntries] Creating entries from ids [1]: "173077".
biodb.DEBUG[2025-01-04 16:04:15.352][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:04:15.354][cch$loadFileContent] Trying to load 1 files from cache: [1]: "173077".
biodb.TRACE[2025-01-04 16:04:15.355][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:04:15.356][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:04:15.357][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:04:15.358][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:04:15.359][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:04:15.359][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:04:15.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:15.362][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:15.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:15.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:15.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:15.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:15.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:15.371][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.DEBUG[2025-01-04 16:04:15.373][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:04:15.374][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:04:15.375][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
biodb.TRACE[2025-01-04 16:04:15.774][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077).
biodb.DEBUG[2025-01-04 16:04:16.287][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:04:16.289][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.content"
biodb.TRACE[2025-01-04 16:04:16.292][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/337fedbe654250105ac3b03683794b9b.request"
biodb.TRACE[2025-01-04 16:04:16.294][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/173077.xml"
biodb.DEBUG[2025-01-04 16:04:16.295][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:04:16.296][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:04:16.297][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:04:16.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:16.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:16.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:16.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:16.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:16.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:16.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:16.309][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:16.310][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:16.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.312][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:16.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:16.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:16.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:16.317][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:16.318][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:16.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.319][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:16.320][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:16.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:16.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:16.324][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:16.325][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:16.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.335][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:16.336][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:16.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:16.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:16.340][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:16.341][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:16.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.343][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:16.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:16.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:16.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:16.347][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:16.348][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:16.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.350][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:16.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:16.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:16.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:16.354][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:16.355][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:16.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.357][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:16.358][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:16.359][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:16.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.361][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:16.362][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:16.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:16.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:16.365][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:16.366][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:16.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.368][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:16.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:16.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:16.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:16.373][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:16.374][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:16.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.375][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:16.376][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:16.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:16.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:16.380][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:16.381][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:16.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.383][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:16.384][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:16.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:16.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:16.388][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:16.389][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:16.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.391][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:16.392][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:16.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:16.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:16.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:16.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:16.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:16.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:16.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:16.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:16.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:16.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:16.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:16.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:16.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:16.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:16.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:16.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:16.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:16.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:16.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:16.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:16.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:16.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:16.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:16.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:16.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:16.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:16.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:16.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:16.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:16.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:16.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:16.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:16.431][self$createEntryFromContent] Accession numbers: 173077.
biodb.TRACE[2025-01-04 16:04:16.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:16.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:16.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:16.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:16.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:16.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:16.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:16.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:16.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:16.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:16.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:16.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:16.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:16.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:16.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:16.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:16.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:16.452][private$loadEntries] Creating entries from ids [1]: "365445".
biodb.DEBUG[2025-01-04 16:04:16.453][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:04:16.454][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365445".
biodb.TRACE[2025-01-04 16:04:16.455][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:04:16.456][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:04:16.457][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:04:16.458][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:04:16.459][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:04:16.460][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:04:16.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:16.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:16.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:16.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:16.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:16.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:16.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:16.471][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.DEBUG[2025-01-04 16:04:16.474][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:04:16.475][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:04:16.476][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
biodb.TRACE[2025-01-04 16:04:17.481][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445).
biodb.DEBUG[2025-01-04 16:04:17.830][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:04:17.833][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.content"
biodb.TRACE[2025-01-04 16:04:17.836][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/026ecb4be6491f40bcefe5cdf8425328.request"
biodb.TRACE[2025-01-04 16:04:17.849][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365445.xml"
biodb.DEBUG[2025-01-04 16:04:17.851][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:04:17.852][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:04:17.853][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:04:17.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:17.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:17.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:17.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:17.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:17.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:17.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:17.866][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:17.867][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:17.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.869][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:17.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:17.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:17.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:17.874][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:17.875][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:17.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.877][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:17.878][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:17.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:17.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:17.882][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:17.883][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:17.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.884][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:17.886][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:17.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:17.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:17.889][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:17.890][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:17.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.892][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:17.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:17.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:17.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:17.897][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:17.898][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:17.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.900][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:17.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:17.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:17.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:17.905][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:17.906][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:17.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.908][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:17.909][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:17.910][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:17.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.912][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:17.913][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:17.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:17.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:17.916][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:17.917][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:17.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.919][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:17.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:17.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:17.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:17.924][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:17.925][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:17.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.927][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:17.928][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:17.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:17.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:17.932][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:17.933][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:17.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.935][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:17.936][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:17.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:17.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:17.939][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:17.940][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:17.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.942][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:17.943][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:17.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:17.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:17.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:17.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:17.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:17.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:17.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:17.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:17.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:17.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:17.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:17.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:17.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:17.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:17.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:17.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:17.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:17.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:17.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:17.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:17.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:17.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:17.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:17.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:17.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:17.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:17.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:17.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:17.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:17.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:17.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:17.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:17.985][self$createEntryFromContent] Accession numbers: 365445.
biodb.TRACE[2025-01-04 16:04:17.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:17.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:17.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:17.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:17.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:17.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:17.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:17.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:17.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:17.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:17.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:17.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:17.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:18.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:18.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:18.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:18.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:18.007][private$loadEntries] Creating entries from ids [1]: "32151".
biodb.DEBUG[2025-01-04 16:04:18.008][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:04:18.016][cch$loadFileContent] Trying to load 1 files from cache: [1]: "32151".
biodb.TRACE[2025-01-04 16:04:18.017][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:04:18.018][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:04:18.019][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:04:18.020][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:04:18.021][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:04:18.022][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:04:18.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:18.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:18.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:18.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:18.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:18.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:18.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:18.035][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.DEBUG[2025-01-04 16:04:18.037][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:04:18.038][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:04:18.040][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
biodb.TRACE[2025-01-04 16:04:18.400][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151).
biodb.DEBUG[2025-01-04 16:04:18.740][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:04:18.742][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.content"
biodb.TRACE[2025-01-04 16:04:18.745][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/094c4c16dd654c0e11594a0cd5a42217.request"
biodb.TRACE[2025-01-04 16:04:18.748][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32151.xml"
biodb.DEBUG[2025-01-04 16:04:18.749][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:04:18.750][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:04:18.751][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:04:18.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:18.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:18.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:18.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:18.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:18.761][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:18.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:18.764][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:18.765][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:18.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.766][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:18.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:18.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:18.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:18.771][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:18.772][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:18.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.774][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:18.775][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:18.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:18.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:18.778][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:18.779][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:18.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.781][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:18.782][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:18.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:18.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:18.786][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:18.787][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:18.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.789][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:18.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:18.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:18.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:18.793][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:18.794][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:18.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.796][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:18.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:18.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:18.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:18.800][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:18.801][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:18.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.803][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:18.804][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:18.805][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:18.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.807][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:18.808][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:18.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:18.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:18.811][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:18.812][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:18.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.814][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:18.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:18.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:18.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:18.819][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:18.819][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:18.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.821][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:18.822][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:18.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:18.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:18.826][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:18.827][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:18.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.828][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:18.829][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:18.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:18.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:18.833][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:18.834][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:18.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.836][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:18.837][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:18.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:18.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:18.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:18.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:18.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:18.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:18.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:18.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:18.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:18.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:18.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:18.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:18.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:18.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:18.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:18.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:18.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:18.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:18.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:18.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:18.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:18.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:18.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:18.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:18.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:18.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:18.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:18.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:18.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:18.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:18.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:18.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:18.886][self$createEntryFromContent] Accession numbers: 32151.
biodb.TRACE[2025-01-04 16:04:18.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:18.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:18.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:18.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:18.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:18.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:18.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:18.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:18.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:18.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:18.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:18.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:18.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:18.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:18.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:18.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:18.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:18.907][private$loadEntries] Creating entries from ids [1]: "67676".
biodb.DEBUG[2025-01-04 16:04:18.908][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:04:18.909][cch$loadFileContent] Trying to load 1 files from cache: [1]: "67676".
biodb.TRACE[2025-01-04 16:04:18.910][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:04:18.911][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:04:18.912][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:04:18.913][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:04:18.914][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:04:18.915][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:04:18.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:18.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:18.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:18.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:18.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:18.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:18.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:18.926][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.DEBUG[2025-01-04 16:04:18.929][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:04:18.929][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:04:18.931][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
biodb.TRACE[2025-01-04 16:04:19.290][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676).
biodb.DEBUG[2025-01-04 16:04:19.637][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:04:19.641][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.content"
biodb.TRACE[2025-01-04 16:04:19.648][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f87eff9f669415e5528b4d9281ce70e2.request"
biodb.TRACE[2025-01-04 16:04:19.653][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/67676.xml"
biodb.DEBUG[2025-01-04 16:04:19.656][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:04:19.659][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:04:19.661][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:04:19.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:19.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:19.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:19.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:19.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:19.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:19.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:19.686][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:19.688][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:19.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.691][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:19.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:19.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:19.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:19.699][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:19.700][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:19.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.703][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:19.704][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:19.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:19.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:19.709][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:19.710][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:19.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.713][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:19.714][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:19.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:19.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:19.718][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:19.719][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:19.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.721][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:19.722][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:19.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:19.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:19.726][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:19.727][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:19.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.729][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:19.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:19.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:19.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:19.733][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:19.734][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:19.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.736][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:19.737][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:19.738][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:19.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.740][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:19.741][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:19.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:19.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:19.744][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:19.745][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:19.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.747][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:19.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:19.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:19.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:19.752][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:19.753][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:19.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.754][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:19.756][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:19.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:19.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:19.759][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:19.760][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:19.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.762][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:19.763][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:19.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:19.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:19.767][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:19.768][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:19.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.777][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:19.779][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:19.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:19.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:19.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:19.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:19.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:19.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:19.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:19.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:19.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:19.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:19.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:19.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:19.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:19.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:19.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:19.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:19.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:19.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:19.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:19.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:19.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:19.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:19.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:19.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:19.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:19.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:19.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:19.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:19.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:19.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:19.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:19.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:19.818][self$createEntryFromContent] Accession numbers: 67676.
biodb.TRACE[2025-01-04 16:04:19.819][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:19.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:19.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:19.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:19.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:19.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:19.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:19.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:19.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:19.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:19.829][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:19.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:19.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:19.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:19.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:19.836][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:19.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:19.838][private$loadEntries] Creating entries from ids [1]: "69690".
biodb.DEBUG[2025-01-04 16:04:19.839][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:04:19.840][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69690".
biodb.TRACE[2025-01-04 16:04:19.841][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:04:19.842][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:04:19.843][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:04:19.844][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:04:19.845][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:04:19.846][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:04:19.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:19.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:19.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:19.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:19.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:19.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:19.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:19.857][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.DEBUG[2025-01-04 16:04:19.860][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:04:19.860][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:04:19.862][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
biodb.TRACE[2025-01-04 16:04:20.230][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690).
biodb.DEBUG[2025-01-04 16:04:20.582][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:04:20.584][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.content"
biodb.TRACE[2025-01-04 16:04:20.587][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ce43467f7e4550d502ff0cc79c06666.request"
biodb.TRACE[2025-01-04 16:04:20.590][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69690.xml"
biodb.DEBUG[2025-01-04 16:04:20.591][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:04:20.592][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:04:20.593][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:04:20.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:20.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:20.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:20.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:20.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:20.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:20.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:20.605][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:20.606][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:20.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.608][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:20.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:20.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:20.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:20.613][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:20.614][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:20.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.616][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:20.617][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:20.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:20.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:20.621][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:20.622][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:20.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.624][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:20.625][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:20.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:20.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:20.629][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:20.630][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:20.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.632][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:20.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:20.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:20.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:20.636][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:20.637][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:20.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.639][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:20.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:20.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:20.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:20.644][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:20.645][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:20.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.646][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:20.656][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:20.657][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:20.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.659][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:20.660][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:20.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:20.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:20.663][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:20.664][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:20.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.666][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:20.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:20.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:20.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:20.670][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:20.671][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:20.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.673][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:20.674][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:20.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:20.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:20.678][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:20.679][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:20.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.680][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:20.681][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:20.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:20.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:20.685][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:20.686][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:20.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.688][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:20.689][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:20.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:20.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:20.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:20.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:20.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:20.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:20.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:20.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:20.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:20.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:20.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:20.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:20.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:20.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:20.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:20.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:20.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:20.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:20.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:20.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:20.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:20.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:20.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:20.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:20.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:20.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:20.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:20.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:20.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:20.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:20.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:20.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:20.727][self$createEntryFromContent] Accession numbers: 69690.
biodb.TRACE[2025-01-04 16:04:20.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:20.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:20.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:20.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:20.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:20.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:20.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:20.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:20.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:20.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:20.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:20.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:20.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:20.744][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:20.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:20.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:20.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:20.747][private$loadEntries] Creating entries from ids [1]: "69734".
biodb.DEBUG[2025-01-04 16:04:20.748][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:04:20.749][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69734".
biodb.TRACE[2025-01-04 16:04:20.751][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:04:20.752][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:04:20.752][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:04:20.753][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:04:20.754][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:04:20.755][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:04:20.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:20.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:20.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:20.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:20.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:20.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:20.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:20.766][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.DEBUG[2025-01-04 16:04:20.769][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:04:20.769][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:04:20.771][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
biodb.TRACE[2025-01-04 16:04:21.138][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734).
biodb.DEBUG[2025-01-04 16:04:21.487][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:04:21.489][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.content"
biodb.TRACE[2025-01-04 16:04:21.492][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3ed7db8dba94801a8856f9bde313afe1.request"
biodb.TRACE[2025-01-04 16:04:21.494][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/69734.xml"
biodb.DEBUG[2025-01-04 16:04:21.495][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:04:21.497][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:04:21.498][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:04:21.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:21.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:21.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:21.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:21.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:21.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:21.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:21.510][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:21.511][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:21.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.513][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:21.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:21.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:21.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:21.518][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:21.527][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:21.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.529][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:21.530][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:21.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:21.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:21.534][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:21.535][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:21.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.537][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:21.538][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:21.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:21.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:21.542][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:21.543][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:21.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.544][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:21.545][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:21.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:21.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:21.549][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:21.550][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:21.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.552][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:21.553][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:21.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:21.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:21.556][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:21.557][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:21.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.559][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:21.560][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:21.561][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:21.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.562][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:21.564][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:21.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:21.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:21.567][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:21.568][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:21.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.570][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:21.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:21.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:21.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:21.574][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:21.575][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:21.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.577][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:21.578][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:21.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:21.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:21.582][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:21.582][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:21.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.584][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:21.585][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:21.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:21.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:21.589][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:21.590][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:21.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.591][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:21.592][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:21.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:21.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:21.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:21.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:21.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:21.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:21.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:21.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:21.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:21.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:21.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:21.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:21.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:21.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:21.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:21.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:21.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:21.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:21.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:21.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:21.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:21.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:21.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:21.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:21.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:21.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:21.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:21.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:21.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:21.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:21.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:21.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:21.631][self$createEntryFromContent] Accession numbers: 69734.
biodb.TRACE[2025-01-04 16:04:21.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:21.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:21.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:21.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:21.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:21.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:21.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:21.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:21.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:21.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:21.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:21.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:21.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:21.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:21.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:21.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:21.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:21.651][private$loadEntries] Creating entries from ids [1]: "79978".
biodb.DEBUG[2025-01-04 16:04:21.652][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:04:21.653][cch$loadFileContent] Trying to load 1 files from cache: [1]: "79978".
biodb.TRACE[2025-01-04 16:04:21.655][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:04:21.656][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:04:21.656][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:04:21.657][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:04:21.658][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:04:21.659][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:04:21.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:21.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:21.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:21.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:21.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:21.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:21.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:21.670][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.DEBUG[2025-01-04 16:04:21.673][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:04:21.674][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:04:21.679][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
biodb.TRACE[2025-01-04 16:04:22.044][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978).
biodb.DEBUG[2025-01-04 16:04:22.385][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:04:22.387][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.content"
biodb.TRACE[2025-01-04 16:04:22.390][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/fb887d003d6fc3b4aa767483d261b31c.request"
biodb.TRACE[2025-01-04 16:04:22.393][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/79978.xml"
biodb.DEBUG[2025-01-04 16:04:22.394][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:04:22.395][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:04:22.396][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:04:22.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:22.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:22.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:22.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:22.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:22.406][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:22.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:22.409][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:22.410][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:22.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.411][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:22.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:22.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:22.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:22.416][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:22.417][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:22.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.419][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:22.420][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:22.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:22.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:22.424][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:22.425][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:22.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.427][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:22.428][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:22.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:22.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:22.432][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:22.433][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:22.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.435][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:22.436][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:22.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:22.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:22.439][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:22.440][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:22.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.442][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:22.443][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:22.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:22.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:22.447][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:22.448][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:22.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.449][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:22.450][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:22.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:22.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:22.454][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:22.455][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:22.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.456][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:22.458][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:22.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:22.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:22.461][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:22.462][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:22.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.464][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:22.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:22.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:22.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:22.468][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:22.469][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:22.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.471][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:22.472][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:22.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:22.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:22.476][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:22.477][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:22.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.478][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:22.479][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:22.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:22.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:22.483][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:22.484][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:22.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.486][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:22.487][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:22.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:22.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:22.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:22.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:22.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:22.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:22.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:22.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:22.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:22.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:22.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:22.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:22.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:22.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:22.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:22.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:22.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:22.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:22.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:22.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:22.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:22.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:22.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:22.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:22.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:22.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:22.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:22.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:22.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:22.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:22.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:22.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:22.526][self$createEntryFromContent] Accession numbers: 79978.
biodb.TRACE[2025-01-04 16:04:22.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:22.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:22.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:22.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:22.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:22.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:22.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:22.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:22.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:22.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:22.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:22.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:22.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:22.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:22.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:22.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:22.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:22.555][private$loadEntries] Creating entries from ids [1]: "88771".
biodb.DEBUG[2025-01-04 16:04:22.556][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2025-01-04 16:04:22.558][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88771".
biodb.TRACE[2025-01-04 16:04:22.559][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-01-04 16:04:22.560][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-01-04 16:04:22.561][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-01-04 16:04:22.561][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-01-04 16:04:22.562][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-01-04 16:04:22.563][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-01-04 16:04:22.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:22.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:22.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:22.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:22.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:22.572][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:22.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:22.574][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.DEBUG[2025-01-04 16:04:22.577][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-01-04 16:04:22.577][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-01-04 16:04:22.579][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
biodb.TRACE[2025-01-04 16:04:23.934][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771).
biodb.DEBUG[2025-01-04 16:04:24.289][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-01-04 16:04:24.293][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.content"
biodb.TRACE[2025-01-04 16:04:24.300][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f96325cdb7f39b42d0ab67a7fc41aced.request"
biodb.TRACE[2025-01-04 16:04:24.305][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88771.xml"
biodb.DEBUG[2025-01-04 16:04:24.308][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-01-04 16:04:24.311][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-01-04 16:04:24.314][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-01-04 16:04:24.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:24.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:24.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:24.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:24.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:24.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:24.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:24.340][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:24.341][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:24.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.344][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:24.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:24.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.352][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:24.353][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:24.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.356][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.358][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:24.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:24.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.362][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:24.364][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:24.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.366][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.367][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:24.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:24.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.372][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:24.373][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:24.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.375][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:24.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:24.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.380][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:24.381][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:24.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.383][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.384][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:24.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:24.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.387][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:24.388][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:24.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.390][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.391][ef$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:24.392][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:24.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.394][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.395][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-01-04 16:04:24.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:24.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.399][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.400][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.402][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.407][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:24.408][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:24.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.409][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.411][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:24.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:24.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.415][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:24.416][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:24.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.418][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.419][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-01-04 16:04:24.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:24.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.423][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:24.424][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:24.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.426][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.427][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:24.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:24.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:24.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:24.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:24.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:24.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:24.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:24.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:24.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:24.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:24.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:24.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:24.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:24.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:24.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:24.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:24.481][self$createEntryFromContent] Accession numbers: 88771.
biodb.TRACE[2025-01-04 16:04:24.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.489][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:24.493][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:24.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:24.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:24.499][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:24.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:24.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:24.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:24.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:24.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:24.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:24.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:24.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:24.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:24.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:24.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:24.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:24.535][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:04:24.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:24.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:24.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:24.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:24.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:24.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:24.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:24.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.553][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:24.554][private$selectFields]
biodb.TRACE[2025-01-04 16:04:24.555][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:24.556][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:24.557][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:24.558][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.559][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.561][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.562][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.562][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.564][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.565][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:24.566][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:24.567][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.568][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.570][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.571][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:04:24.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.584][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-01-04 16:04:24.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:24.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:24.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:24.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:24.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:24.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:24.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:24.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.602][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:24.603][private$selectFields]
biodb.TRACE[2025-01-04 16:04:24.604][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:24.605][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:24.606][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:24.607][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.608][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.610][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.617][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.618][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.620][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.621][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:24.622][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:24.623][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.624][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.626][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.627][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:04:24.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.639][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-01-04 16:04:24.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:24.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:24.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:24.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:24.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:24.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:24.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:24.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.657][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:24.658][private$selectFields]
biodb.TRACE[2025-01-04 16:04:24.659][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:24.660][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:24.660][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:24.661][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.662][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.664][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.665][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.666][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.668][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.669][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:24.670][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:24.670][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.671][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.673][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.674][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:04:24.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.686][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-01-04 16:04:24.687][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:04:24.688][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:04:24.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:24.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:24.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:24.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:24.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:24.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:24.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:24.701][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:04:24.704][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:04:24.705][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2025-01-04 16:04:24.706][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:04:24.707][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2025-01-04 16:04:24.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:24.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:24.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:24.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:24.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:24.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:24.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:24.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:24.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:24.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:24.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:24.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:24.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:24.741][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:24.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:24.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:24.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:24.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:24.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:24.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:24.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:24.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:24.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:24.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:24.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:24.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:24.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:24.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:24.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:24.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:24.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:24.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:24.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:24.808][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:04:24.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:24.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:24.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:24.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:24.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:24.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:24.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:24.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.827][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:24.828][private$selectFields]
biodb.TRACE[2025-01-04 16:04:24.829][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:24.829][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:24.830][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:24.831][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.832][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.834][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.835][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.836][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.838][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.839][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:24.840][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:24.841][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.841][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.843][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.844][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:04:24.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.857][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-01-04 16:04:24.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:24.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:24.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:24.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:24.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:24.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:24.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:24.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.875][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:24.875][private$selectFields]
biodb.TRACE[2025-01-04 16:04:24.876][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:24.877][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:24.878][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:24.879][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.880][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.882][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.883][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.884][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.885][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.886][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:24.887][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:24.888][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.889][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.891][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.892][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:04:24.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.904][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-01-04 16:04:24.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:24.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:24.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:24.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:24.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:24.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:24.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:24.915][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.923][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:24.924][private$selectFields]
biodb.TRACE[2025-01-04 16:04:24.925][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:24.926][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:24.927][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:24.928][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.929][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.930][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.931][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.932][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.934][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.935][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:24.936][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:24.937][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.938][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.940][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.941][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:04:24.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:24.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:24.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:24.960][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-01-04 16:04:24.961][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:04:24.962][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:04:24.980][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:24.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:24.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:24.986][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:24.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:24.988][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:24.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:24.991][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:04:24.994][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:04:24.996][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2025-01-04 16:04:24.997][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:04:24.998][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2025-01-04 16:04:25.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:25.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:25.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:25.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:25.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:25.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:25.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:25.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:25.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:25.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:25.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:25.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:25.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:25.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:25.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:25.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:25.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:25.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:25.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:25.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:25.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:25.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:25.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:25.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:25.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:25.067][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:25.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:25.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:25.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:25.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:25.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:25.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:25.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:25.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:25.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:25.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:25.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:25.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:25.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:25.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:25.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:25.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:25.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:25.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:25.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:25.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:25.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:25.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:25.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:25.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:25.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:25.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:25.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:25.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:25.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:25.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:25.160][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:04:25.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:25.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:25.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:25.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:25.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:25.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:25.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:25.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.179][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.179][private$selectFields]
biodb.TRACE[2025-01-04 16:04:25.180][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:25.181][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:25.182][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.183][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.184][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.186][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.187][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.188][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.189][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.190][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.191][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.192][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.193][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.195][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.196][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:04:25.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.208][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-01-04 16:04:25.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:25.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:25.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:25.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:25.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:25.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:25.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:25.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.226][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.227][private$selectFields]
biodb.TRACE[2025-01-04 16:04:25.228][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:25.229][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:25.230][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.231][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.232][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.233][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.234][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.235][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.237][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.238][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.239][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.240][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.241][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.243][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.243][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:04:25.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.256][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-01-04 16:04:25.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:25.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:25.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:25.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:25.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:25.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:25.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:25.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.275][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.282][private$selectFields]
biodb.TRACE[2025-01-04 16:04:25.284][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:25.285][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:25.286][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.287][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.288][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.290][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.291][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.292][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.294][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.295][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.296][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.297][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.298][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.299][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.300][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:04:25.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.309][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.313][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2025-01-04 16:04:25.314][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:04:25.314][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:04:25.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:25.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:25.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:25.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:25.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:25.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:25.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:25.328][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:04:25.331][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:04:25.332][cch$loadFileContent] Trying to load 1 files from cache: [1]: "365d4ea5e0e90826806fec708da6c9ab".
biodb.TRACE[2025-01-04 16:04:25.333][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:04:25.335][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/365d4ea5e0e90826806fec708da6c9ab.content".
biodb.DEBUG[2025-01-04 16:04:25.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:25.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:25.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:25.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:25.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:25.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:25.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:25.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:25.364][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:25.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:25.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:25.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:25.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:25.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:25.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:25.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:25.384][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:25.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:25.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:25.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:25.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:25.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:25.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:25.394][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:25.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:25.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:25.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:25.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:25.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:25.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:25.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:25.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:25.424][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:04:25.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:25.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:25.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:25.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:25.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:25.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:25.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:25.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.455][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.456][private$selectFields]
biodb.TRACE[2025-01-04 16:04:25.458][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:25.459][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:25.460][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.462][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.463][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.465][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.466][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.466][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.468][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.469][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.470][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.471][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.472][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.473][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.474][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:04:25.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.486][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2025-01-04 16:04:25.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:25.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:25.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:25.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:25.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:25.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:25.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:25.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.503][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.504][private$selectFields]
biodb.TRACE[2025-01-04 16:04:25.505][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:25.506][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:25.507][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.507][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.508][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.510][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.511][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.512][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.514][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.514][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.515][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.516][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.517][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.519][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.520][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:04:25.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.531][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-01-04 16:04:25.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:25.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:25.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:25.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:25.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:25.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:25.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:25.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.548][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.549][private$selectFields]
biodb.TRACE[2025-01-04 16:04:25.550][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:25.550][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:25.551][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.552][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.553][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.555][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.556][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.557][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.558][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.559][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.560][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.561][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.562][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.563][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.564][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:04:25.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.576][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-01-04 16:04:25.577][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:04:25.578][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:04:25.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:25.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:25.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:25.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:25.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:25.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:25.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:25.590][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:04:25.593][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:04:25.594][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7b0416ab2d5cbf869f248000c039a8e8".
biodb.TRACE[2025-01-04 16:04:25.595][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:04:25.597][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7b0416ab2d5cbf869f248000c039a8e8.content".
biodb.DEBUG[2025-01-04 16:04:25.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:25.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:25.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:25.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:25.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:25.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:25.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:25.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:25.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:25.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:25.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:25.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:25.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:25.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:25.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:25.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:25.643][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:25.644][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:25.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:25.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:25.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:25.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:25.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:25.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:25.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:25.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:25.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:25.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:25.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:25.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:25.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:25.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:25.681][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:25.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:25.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:25.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:25.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:25.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:25.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:25.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:25.700][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:04:25.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:25.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:25.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:25.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:25.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:25.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:25.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:25.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.717][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.718][private$selectFields]
biodb.TRACE[2025-01-04 16:04:25.719][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:25.720][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:25.721][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.722][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.723][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.724][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.725][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.726][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.728][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.729][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.730][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.730][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.731][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.733][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.734][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:04:25.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.746][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2025-01-04 16:04:25.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:25.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:25.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:25.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:25.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:25.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:25.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:25.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.768][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.769][private$selectFields]
biodb.TRACE[2025-01-04 16:04:25.770][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:25.771][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:25.771][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.772][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.773][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.775][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.776][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.777][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.779][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.780][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.781][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.782][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.783][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.784][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.785][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:04:25.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.798][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2025-01-04 16:04:25.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:25.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:25.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:25.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:25.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:25.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:25.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:25.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.815][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.816][private$selectFields]
biodb.TRACE[2025-01-04 16:04:25.817][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:25.817][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:25.818][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.819][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.820][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.822][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.823][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.824][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.825][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.826][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.827][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.828][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.829][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.830][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.831][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:04:25.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.843][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2025-01-04 16:04:25.844][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:04:25.844][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:04:25.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:25.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:25.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:25.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:25.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:25.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:25.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:25.870][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:04:25.873][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:04:25.874][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-01-04 16:04:25.875][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:04:25.876][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-01-04 16:04:25.879][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:04:25.882][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:04:25.883][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-01-04 16:04:25.884][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:04:25.885][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-01-04 16:04:25.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:25.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:25.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:25.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:25.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:25.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:25.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:25.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.903][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:25.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:25.908][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:25.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:25.917][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:25.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:25.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:25.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:25.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:25.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:25.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:25.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:25.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:25.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:25.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:25.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:25.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:25.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:25.950][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:04:25.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:25.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:25.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:25.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:25.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:25.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:25.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:25.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.967][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.968][private$selectFields]
biodb.TRACE[2025-01-04 16:04:25.969][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:25.970][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:25.970][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.971][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.972][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.974][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.975][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.976][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.977][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.978][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.979][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:25.980][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.981][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.983][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.983][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:04:25.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:25.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:25.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:25.995][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-01-04 16:04:25.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:25.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:25.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:26.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:26.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:26.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:26.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:26.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.011][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.012][private$selectFields]
biodb.TRACE[2025-01-04 16:04:26.013][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:26.014][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:26.015][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.016][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.017][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.018][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.019][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.020][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.022][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.023][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.023][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.024][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.025][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.027][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.028][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:04:26.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.040][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-01-04 16:04:26.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:26.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:26.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:26.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:26.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:26.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:26.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:26.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.057][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.058][private$selectFields]
biodb.TRACE[2025-01-04 16:04:26.063][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:26.064][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:26.065][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.067][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.068][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.069][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.070][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.071][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.073][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.074][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.075][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.076][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.077][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.078][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.079][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:04:26.080][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.091][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-01-04 16:04:26.092][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:04:26.093][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:04:26.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:26.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:26.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:26.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:26.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:26.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:26.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:26.105][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:04:26.108][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:04:26.109][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-01-04 16:04:26.110][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:04:26.111][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-01-04 16:04:26.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:26.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:26.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:26.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:26.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:26.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:26.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:26.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:26.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:26.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:26.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:26.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:26.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:26.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:26.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:26.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:26.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:26.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:26.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:26.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:26.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:26.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:26.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:26.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:26.172][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:04:26.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:26.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:26.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:26.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:26.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:26.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:26.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:26.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.190][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.191][private$selectFields]
biodb.TRACE[2025-01-04 16:04:26.191][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:26.192][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:26.193][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.194][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.195][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.197][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.198][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.199][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.200][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.201][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.202][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.203][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.204][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.206][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.206][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:04:26.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.224][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-01-04 16:04:26.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:26.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:26.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:26.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:26.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:26.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:26.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:26.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.237][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.241][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.241][private$selectFields]
biodb.TRACE[2025-01-04 16:04:26.242][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:26.243][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:26.244][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.245][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.246][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.247][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.248][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.249][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.251][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.252][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.253][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.253][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.254][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.256][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.257][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:04:26.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.269][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-01-04 16:04:26.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:26.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:26.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:26.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:26.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:26.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:26.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:26.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.286][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.286][private$selectFields]
biodb.TRACE[2025-01-04 16:04:26.287][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:26.288][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:26.289][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.290][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.291][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.292][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.293][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.294][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.296][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.297][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.298][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.298][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.299][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.301][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.302][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:04:26.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.314][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-01-04 16:04:26.315][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:04:26.315][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:04:26.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:26.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:26.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:26.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:26.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:26.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:26.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:26.327][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:04:26.330][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:04:26.331][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-01-04 16:04:26.333][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:04:26.334][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-01-04 16:04:26.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:26.338][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:26.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:26.342][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:26.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:26.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:26.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:26.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:26.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:26.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:26.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:26.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:26.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:26.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:26.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:26.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:26.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:26.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:26.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:26.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:26.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:26.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:26.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:26.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.394][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:26.402][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:04:26.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:26.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:26.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:26.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:26.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:26.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:26.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:26.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.419][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.420][private$selectFields]
biodb.TRACE[2025-01-04 16:04:26.421][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:26.422][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:26.422][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.423][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.424][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.426][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.427][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.428][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.429][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.430][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.431][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.432][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.433][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.435][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.435][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:04:26.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.447][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-01-04 16:04:26.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:26.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:26.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:26.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:26.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:26.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:26.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:26.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.464][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.465][private$selectFields]
biodb.TRACE[2025-01-04 16:04:26.466][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:26.467][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:26.468][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.469][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.470][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.471][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.472][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.473][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.475][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.476][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.477][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.477][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.478][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.480][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.481][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:04:26.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.493][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-01-04 16:04:26.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:26.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:26.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:26.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:26.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:26.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:26.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:26.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.511][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.512][private$selectFields]
biodb.TRACE[2025-01-04 16:04:26.512][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:26.513][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:26.514][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.515][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.516][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.522][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.523][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.524][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.526][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.527][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.528][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.529][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.530][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.532][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.532][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:04:26.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.544][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-01-04 16:04:26.545][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:04:26.546][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:04:26.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:26.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:26.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:26.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:26.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:26.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:26.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:26.573][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:04:26.576][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:04:26.577][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26eec570aadd234892b573eb0777bd78".
biodb.TRACE[2025-01-04 16:04:26.578][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:04:26.579][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26eec570aadd234892b573eb0777bd78.content".
biodb.DEBUG[2025-01-04 16:04:26.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:26.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:26.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:26.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:26.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:26.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:26.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:26.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:26.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:26.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:26.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:26.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:26.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:26.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:26.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:26.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:26.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:26.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:26.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:26.626][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:26.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:26.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:26.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:26.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:26.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:26.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:26.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:26.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:26.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:26.647][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:26.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:26.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:26.660][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:26.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:26.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:26.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:26.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:26.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:26.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:26.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:26.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:26.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:26.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:26.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:26.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:26.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:26.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:26.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:26.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:26.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:26.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:26.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:26.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:26.712][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:26.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:26.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:26.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:26.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:26.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:26.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:26.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:26.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:26.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:26.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:26.744][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:04:26.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:26.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:26.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:26.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:26.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:26.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:26.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:26.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.761][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.762][private$selectFields]
biodb.TRACE[2025-01-04 16:04:26.763][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:26.764][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:26.764][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.765][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.766][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.768][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.769][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.770][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.771][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.772][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.773][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.774][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.775][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.777][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.777][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:04:26.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.789][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-01-04 16:04:26.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:26.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:26.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:26.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:26.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:26.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:26.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:26.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.807][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.808][private$selectFields]
biodb.TRACE[2025-01-04 16:04:26.808][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:26.809][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:26.810][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.811][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.812][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.814][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.815][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.816][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.817][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.818][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.819][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.820][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.821][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.827][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.828][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:04:26.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.841][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-01-04 16:04:26.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:26.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:26.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:26.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:26.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:26.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:26.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:26.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.858][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.859][private$selectFields]
biodb.TRACE[2025-01-04 16:04:26.859][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:26.860][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:26.861][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.862][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.863][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.865][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.865][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.866][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.868][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.869][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.870][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:26.871][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.872][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.873][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.874][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:04:26.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:26.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.886][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-01-04 16:04:26.887][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:04:26.888][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:04:26.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:26.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:26.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:26.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:26.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:26.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:26.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:26.900][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:04:26.903][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:04:26.904][cch$loadFileContent] Trying to load 1 files from cache: [1]: "20c224089a82bbffabd2e7dbc67cfae3".
biodb.TRACE[2025-01-04 16:04:26.905][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:04:26.907][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/20c224089a82bbffabd2e7dbc67cfae3.content".
biodb.DEBUG[2025-01-04 16:04:26.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:26.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:26.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:26.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:26.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:26.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:26.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:26.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:26.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:26.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:26.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:26.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:26.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:26.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:26.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:26.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:26.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:26.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:26.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:26.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:26.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:26.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:26.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:26.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:26.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:26.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:26.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:26.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:26.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:26.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:26.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:26.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:26.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:26.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:26.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:26.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:26.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:26.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:27.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:27.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:27.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:27.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:27.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.100][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:27.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:27.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:27.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:27.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:27.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.197][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:27.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:27.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:27.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.260][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:27.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:27.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:27.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:27.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.342][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:27.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:27.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:27.395][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.396][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.402][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:27.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.416][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:27.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:27.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:27.478][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.479][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:27.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:27.516][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:04:27.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.518][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.524][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.533][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:27.534][private$selectFields]
biodb.TRACE[2025-01-04 16:04:27.535][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:27.536][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:27.536][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:27.537][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.538][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.540][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.541][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.542][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.543][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.544][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:27.545][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:27.546][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.547][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.549][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.550][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:04:27.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.562][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-01-04 16:04:27.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.584][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:27.585][private$selectFields]
biodb.TRACE[2025-01-04 16:04:27.586][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:27.587][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:27.588][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:27.588][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.589][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.591][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.592][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.593][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.594][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.595][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:27.596][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:27.597][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.598][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.600][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.601][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:04:27.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.612][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-01-04 16:04:27.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.629][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:27.630][private$selectFields]
biodb.TRACE[2025-01-04 16:04:27.631][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:27.632][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:27.633][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:27.633][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.634][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.636][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.637][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.638][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.640][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.640][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:27.641][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:27.642][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.643][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.645][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.646][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:04:27.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.657][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-01-04 16:04:27.658][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:04:27.659][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:04:27.661][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:27.671][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:04:27.674][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:04:27.675][cch$loadFileContent] Trying to load 1 files from cache: [1]: "a035d13a630066423fab6713592c5e52".
biodb.TRACE[2025-01-04 16:04:27.676][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:04:27.677][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a035d13a630066423fab6713592c5e52.content".
biodb.DEBUG[2025-01-04 16:04:27.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:27.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:27.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:27.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:27.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:27.766][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:04:27.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.768][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.783][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:27.784][private$selectFields]
biodb.TRACE[2025-01-04 16:04:27.785][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:27.785][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:27.786][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:27.787][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.788][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.790][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.791][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.792][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.793][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.794][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:27.795][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:27.796][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.797][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.798][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.799][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:04:27.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.811][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-01-04 16:04:27.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.827][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:27.828][private$selectFields]
biodb.TRACE[2025-01-04 16:04:27.829][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:27.830][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:27.831][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:27.832][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.832][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.834][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.835][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.836][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.838][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.838][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:27.839][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:27.840][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.841][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.843][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.844][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:04:27.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.856][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-01-04 16:04:27.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:27.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:27.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:27.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:27.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.877][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:27.878][private$selectFields]
biodb.TRACE[2025-01-04 16:04:27.879][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:27.880][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:27.881][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:27.881][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.882][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.884][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.885][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.886][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.888][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.888][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:27.889][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-01-04 16:04:27.890][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.891][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.893][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.894][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-01-04 16:04:27.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:27.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.905][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-01-04 16:04:27.906][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:04:27.907][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-01-04 16:04:27.921][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-01-04 16:04:27.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-01-04 16:04:27.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.924][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-01-04 16:04:27.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-01-04 16:04:27.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.928][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-01-04 16:04:27.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-01-04 16:04:27.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-01-04 16:04:27.934][biodb::testThat]
biodb.INFO [2025-01-04 16:04:27.935][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-01-04 16:04:27.936][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-01-04 16:04:27.937][biodb::testThat]
biodb.TRACE[2025-01-04 16:04:27.939][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-04 16:04:27.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-04 16:04:27.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.943][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-04 16:04:27.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-04 16:04:27.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.946][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-01-04 16:04:27.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-01-04 16:04:27.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:27.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:27.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:27.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:27.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:27.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:27.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:27.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:27.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.964][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:27.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:27.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:27.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:27.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:27.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:27.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:27.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:27.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:27.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:27.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:27.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:27.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:27.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:27.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:27.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:27.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:27.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:27.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:27.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:27.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:27.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:27.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:28.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:28.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:28.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:28.004][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:04:28.007][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:04:28.008][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-01-04 16:04:28.009][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:04:28.011][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-01-04 16:04:28.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:28.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:28.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:28.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:28.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:28.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:28.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:28.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:28.042][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:04:28.045][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:04:28.046][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-01-04 16:04:28.047][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:04:28.048][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-01-04 16:04:28.050][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:28.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:28.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:28.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:28.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:28.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:28.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:28.059][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:28.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:28.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:28.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:28.075][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:28.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:28.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:28.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:28.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:28.089][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:04:28.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:28.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:28.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:28.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:28.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:28.097][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:28.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:28.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:28.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:28.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:28.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:28.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.106][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:28.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:28.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.109][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:28.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:28.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.113][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.120][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:28.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:28.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.123][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:28.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:28.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.127][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:28.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:28.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:28.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:28.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.137][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.141][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:28.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:28.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.144][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:28.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:28.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.155][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.162][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.166][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.169][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:28.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:28.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.173][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:28.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:28.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.181][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:28.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:28.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.185][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:28.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:28.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.189][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:28.190][private$selectFields]
biodb.TRACE[2025-01-04 16:04:28.190][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:28.191][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:28.192][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:28.193][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:28.194][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:28.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.196][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.196][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:28.197][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:28.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.199][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.200][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.201][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.203][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.203][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:28.204][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:28.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.206][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.207][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:28.208][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:28.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.209][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.210][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.211][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.213][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.214][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:28.215][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:28.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.216][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.217][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.218][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.220][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.221][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.222][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.223][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.224][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.225][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.227][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.228][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:28.229][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:28.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.230][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.231][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:28.232][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:28.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.234][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.235][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:28.236][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:28.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.237][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.238][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:28.239][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:28.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.241][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.242][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.243][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.244][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.245][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:28.246][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:28.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.248][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.248][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:28.249][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:28.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.251][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.252][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.253][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.254][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.255][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:28.256][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:28.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.258][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.259][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.260][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.261][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.262][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.263][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.265][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.266][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.267][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.268][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.269][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:28.270][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:28.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.272][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.273][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:28.274][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:28.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.275][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.276][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:28.277][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:28.278][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:28.279][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:28.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.280][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.281][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:28.282][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:28.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.284][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.285][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.286][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.287][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.288][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:28.289][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:28.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.291][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.292][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:28.292][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:28.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.294][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.295][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.296][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.298][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.299][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.300][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.301][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.302][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.303][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.305][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.306][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.307][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.308][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.309][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:28.310][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:28.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.312][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.313][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:28.314][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:28.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.315][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.316][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:28.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:28.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:28.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:28.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:28.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:28.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:28.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.333][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:28.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:28.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.337][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:28.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:28.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.341][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:28.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:28.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.356][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:28.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:28.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.359][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:28.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:28.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.363][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:28.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:28.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.367][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:28.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:28.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.370][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:28.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:28.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.374][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:28.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:28.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.410][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.413][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.417][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.420][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:28.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:28.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.424][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:28.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:28.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.427][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:28.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:28.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.431][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:28.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:28.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.435][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:28.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:28.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.438][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:28.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:28.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.448][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-01-04 16:04:28.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:28.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:28.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:28.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:28.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:28.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:28.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:28.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:28.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:28.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:28.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:28.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.466][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:28.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:28.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.469][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:28.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:28.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.485][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:28.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:28.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.489][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:28.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:28.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:28.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:28.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:28.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:28.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.507][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:28.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:28.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.511][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:28.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:28.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.528][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.532][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.535][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:28.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:28.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.539][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:28.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:28.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.542][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:28.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:28.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.546][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:28.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:28.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.549][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:28.550][private$selectFields]
biodb.TRACE[2025-01-04 16:04:28.551][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:28.552][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:28.553][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:28.553][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:28.554][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:28.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.556][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.557][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:28.558][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:28.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.559][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.560][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.561][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.563][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.564][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:28.565][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:28.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.566][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.567][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:28.568][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:28.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.570][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.571][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.572][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.573][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.574][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:28.575][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:28.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.577][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.578][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.579][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.580][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.581][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.582][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.584][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.585][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.585][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.587][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.588][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:28.589][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:28.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.591][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.591][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:28.592][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:28.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.594][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.595][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:28.596][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:28.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.598][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.598][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:28.599][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:28.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.601][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.602][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.603][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.605][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.606][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:28.607][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:28.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.608][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.609][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:28.610][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:28.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.612][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.613][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.614][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.615][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.616][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:28.617][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:28.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.619][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.620][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.621][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.622][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.623][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.624][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.626][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.627][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.628][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.634][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.635][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:28.636][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:28.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.638][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.639][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:28.640][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:28.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.642][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.643][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:28.644][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:28.645][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:28.646][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:28.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.647][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.648][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:28.649][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:28.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.651][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.652][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.653][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.654][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.655][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:28.656][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:28.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.658][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.659][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:28.660][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:28.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.661][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.662][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.663][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.665][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.666][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:28.667][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:28.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.668][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.669][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.670][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.672][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.673][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.673][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.675][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.676][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.677][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.679][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.679][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:28.680][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:28.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.682][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.683][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:28.684][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:28.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.685][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.686][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:28.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:28.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:28.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:28.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:28.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:28.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:28.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.698][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:28.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:28.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.701][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:28.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:28.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.705][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:28.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:28.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.719][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:28.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:28.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.723][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:28.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:28.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.726][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:28.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:28.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:28.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:28.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.733][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:28.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:28.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:28.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:28.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.740][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.747][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.751][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:28.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:28.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.755][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:28.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:28.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.758][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:28.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:28.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.788][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.792][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.796][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.800][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:28.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:28.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.804][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:28.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:28.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.807][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:28.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:28.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.811][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:28.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:28.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.815][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:28.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:28.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.818][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:28.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:28.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.827][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-01-04 16:04:28.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:28.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:28.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:28.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:28.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:28.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:28.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:28.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:28.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:28.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:28.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:28.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.844][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:28.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:28.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.847][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:28.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:28.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.858][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:28.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:28.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.861][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:28.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:28.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.865][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:28.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:28.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.868][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:28.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:28.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.875][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.879][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:28.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:28.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.882][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:28.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:28.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.900][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.903][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.907][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:28.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:28.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.911][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:28.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:28.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.914][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:28.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:28.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.918][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:28.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:28.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.921][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:28.922][private$selectFields]
biodb.TRACE[2025-01-04 16:04:28.923][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:28.924][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:28.925][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:28.925][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:28.926][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:28.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.928][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.933][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:28.934][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:28.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.936][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.937][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.938][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.940][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.941][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:28.942][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:28.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.944][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.945][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:28.945][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:28.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.947][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.948][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.949][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.951][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.951][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:28.952][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:28.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.954][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.955][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.956][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.958][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.958][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.959][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:28.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.961][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.962][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.963][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:28.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.965][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.965][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:28.966][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:28.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.968][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.969][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:28.970][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:28.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.971][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.972][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:28.973][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:28.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.975][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.976][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:28.977][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:28.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.978][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.979][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.980][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:28.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.982][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.983][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:28.984][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:28.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.985][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.986][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:28.987][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:28.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.989][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.990][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.991][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:28.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.992][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.993][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:28.994][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:28.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.996][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:28.997][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.998][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:28.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:28.999][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.000][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.001][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.003][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.004][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.004][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.006][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.007][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:29.008][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:29.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.010][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.010][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:29.011][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:29.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.013][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.014][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:29.015][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:29.016][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:29.017][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:29.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.018][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.019][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:29.020][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:29.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.022][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.023][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.024][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.025][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.026][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:29.027][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:29.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.029][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.030][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:29.030][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:29.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.032][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.033][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.034][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.036][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.036][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.037][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.039][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.040][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.041][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.042][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.043][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.044][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.046][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.047][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:29.048][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:29.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.050][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.050][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:29.051][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:29.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.053][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.054][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:29.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:29.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:29.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:29.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:29.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:29.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:29.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.066][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:29.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:29.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.069][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:29.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:29.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.073][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:29.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:29.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.093][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:29.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:29.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.096][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:29.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:29.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.100][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:29.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:29.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.103][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:29.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:29.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.107][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:29.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:29.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:29.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:29.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.114][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.118][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.121][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.146][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.150][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.153][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.157][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:29.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:29.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.160][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:29.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:29.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.164][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:29.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:29.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.167][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:29.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:29.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.171][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:29.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:29.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.174][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:29.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:29.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.183][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-01-04 16:04:29.184][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:04:29.184][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:04:29.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:29.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:29.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:29.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:29.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:29.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:29.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:29.198][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:04:29.200][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:04:29.202][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-01-04 16:04:29.203][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:04:29.204][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-01-04 16:04:29.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:29.207][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:29.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:29.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:29.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:29.213][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:29.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:29.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:29.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:29.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:29.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:29.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:29.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:29.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:29.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:29.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:29.252][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:04:29.255][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:04:29.256][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-01-04 16:04:29.258][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:04:29.259][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-01-04 16:04:29.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:29.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:29.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:29.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:29.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:29.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:29.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:29.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:29.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:29.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:29.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:29.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:29.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:29.288][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:29.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:29.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:29.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:29.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:29.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:29.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:29.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:29.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:29.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:29.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:29.320][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:04:29.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:29.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:29.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:29.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:29.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:29.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:29.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:29.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:29.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:29.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:29.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:29.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.337][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:29.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:29.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.341][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:29.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:29.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.344][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.351][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:29.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:29.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.355][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:29.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:29.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.358][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:29.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:29.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.362][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:29.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:29.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.366][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.369][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.373][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:29.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:29.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.376][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:29.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:29.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.385][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.389][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.400][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.404][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.408][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:29.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:29.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:29.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:29.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.415][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:29.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:29.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.419][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:29.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:29.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.422][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:29.423][private$selectFields]
biodb.TRACE[2025-01-04 16:04:29.424][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:29.425][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:29.426][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:29.427][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:29.428][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:29.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.429][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.430][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:29.431][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:29.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.433][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.434][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.435][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.436][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.437][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:29.438][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:29.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.440][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.441][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:29.441][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:29.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.443][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.444][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.445][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.447][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.447][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:29.448][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:29.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.450][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.451][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.452][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.454][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.454][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.455][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.457][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.458][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.459][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.460][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.461][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:29.462][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:29.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.464][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.465][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:29.466][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:29.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.467][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.468][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:29.469][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:29.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.471][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.472][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:29.473][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:29.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.474][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.475][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.476][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.478][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.479][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:29.479][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:29.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.481][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.482][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:29.483][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:29.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.485][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.485][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.486][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.488][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.489][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:29.490][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:29.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.492][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.492][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.493][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.495][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.496][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.497][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.499][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.499][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.500][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.502][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.503][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:29.504][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:29.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.506][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.507][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:29.508][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:29.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.509][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.510][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:29.511][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:29.512][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:29.513][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:29.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.515][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.516][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:29.516][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:29.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.518][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.519][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.520][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.522][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.523][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:29.524][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:29.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.525][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.526][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:29.527][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:29.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.529][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.530][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.535][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.537][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.538][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:29.539][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:29.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.541][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.542][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.543][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.545][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.546][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.547][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.549][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.550][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.551][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.552][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.553][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:29.554][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:29.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.556][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.557][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:29.558][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:29.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.560][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.561][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:29.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:29.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:29.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:29.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:29.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:29.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:29.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.573][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:29.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:29.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.577][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:29.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:29.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.580][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:29.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:29.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.595][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:29.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:29.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.598][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:29.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:29.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.602][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:29.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:29.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.605][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:29.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:29.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.609][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:29.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:29.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:29.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:29.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.626][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:29.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:29.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.630][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:29.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:29.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.633][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:29.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:29.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.658][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.662][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.666][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.669][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:29.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:29.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.673][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:29.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:29.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.676][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:29.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:29.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.680][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:29.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:29.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.688][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:29.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:29.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.692][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:29.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:29.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.701][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-01-04 16:04:29.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:29.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:29.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:29.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:29.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:29.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:29.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:29.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:29.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:29.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:29.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:29.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.718][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:29.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:29.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.721][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:29.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:29.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.732][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:29.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:29.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.735][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:29.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:29.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.739][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:29.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:29.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:29.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:29.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.749][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.753][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:29.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:29.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.756][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:29.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:29.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.774][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.777][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.781][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:29.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:29.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.784][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:29.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:29.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.788][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:29.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:29.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.791][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:29.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:29.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.795][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:29.795][private$selectFields]
biodb.TRACE[2025-01-04 16:04:29.796][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:29.797][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:29.798][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:29.799][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:29.800][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:29.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.802][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.802][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:29.803][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:29.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.805][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.806][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.807][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.809][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.810][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:29.810][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:29.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.812][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.813][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:29.814][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:29.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.816][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.817][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.817][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.819][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.820][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:29.821][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:29.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.823][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.824][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.824][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.826][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.827][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.832][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.834][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.835][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.836][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.838][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.839][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:29.840][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:29.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.842][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.843][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:29.843][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:29.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.845][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.846][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:29.847][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:29.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.849][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.850][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:29.850][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:29.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.852][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.853][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.854][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.856][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.856][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:29.857][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:29.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.859][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.860][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:29.861][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:29.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.862][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.863][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.864][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.866][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.867][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:29.868][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:29.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.869][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.870][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.871][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.873][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.874][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.875][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.876][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.877][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.878][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.880][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.881][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:29.882][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:29.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.883][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.884][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:29.885][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:29.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.887][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.888][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:29.888][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:29.889][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:29.890][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:29.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.892][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.893][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:29.894][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:29.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.895][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.896][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.897][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.899][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.900][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:29.901][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:29.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.902][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.903][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:29.904][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:29.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.906][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.906][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.907][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.909][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.910][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:29.911][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:29.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.912][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.913][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.914][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:29.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.916][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.917][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.918][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:29.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.919][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.920][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.921][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:29.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.923][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.924][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:29.924][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:29.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.926][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.927][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:29.928][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:29.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.930][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.930][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:29.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:29.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:29.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:29.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:29.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:29.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:29.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.942][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:29.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:29.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.946][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:29.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:29.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.949][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:29.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:29.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:29.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.964][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:29.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:29.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.967][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:29.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:29.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.971][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:29.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:29.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.974][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:29.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:29.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:29.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:29.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:29.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:29.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:29.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:29.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:29.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.001][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:30.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:30.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.004][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:30.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:30.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.008][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:30.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:30.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.022][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:30.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:30.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:30.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:30.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:30.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:30.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.033][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:30.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:30.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.036][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:30.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:30.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.040][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:30.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:30.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.044][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:30.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:30.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.047][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:30.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:30.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.051][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:30.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:30.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.055][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:30.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:30.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.058][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:30.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:30.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.062][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:30.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:30.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.070][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-01-04 16:04:30.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:30.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:30.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:30.077][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:30.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:30.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:30.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:30.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:30.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:30.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:30.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:30.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.087][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:30.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:30.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.091][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:30.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:30.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:30.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:30.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:30.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:30.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.101][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:30.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:30.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.105][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:30.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:30.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.108][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:30.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:30.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.112][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:30.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:30.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.116][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:30.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:30.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.119][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:30.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:30.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.123][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:30.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:30.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.131][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:30.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:30.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:30.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:30.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.145][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:30.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:30.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.149][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:30.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:30.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.152][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:30.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:30.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.156][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:30.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:30.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.159][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:30.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:30.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.163][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:30.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:30.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.166][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:30.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:30.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.170][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:30.171][private$selectFields]
biodb.TRACE[2025-01-04 16:04:30.171][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:30.172][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:30.173][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:30.174][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:30.175][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:30.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.177][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.178][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:30.178][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:30.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.180][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.181][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:30.182][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:30.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.184][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.184][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:30.185][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:30.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.187][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.188][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:30.189][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:30.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.190][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.191][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:30.192][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:30.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.194][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.195][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:30.196][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:30.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.197][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.198][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.199][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.201][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.202][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:30.203][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:30.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.204][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.205][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:30.206][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:30.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.208][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.208][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:30.209][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:30.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.211][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.212][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:30.213][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:30.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.214][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.215][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:30.216][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:30.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.218][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.219][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:30.220][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:30.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.221][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.222][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:30.223][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:30.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.225][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.226][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:30.227][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:30.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.228][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.229][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:30.230][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:30.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.232][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.233][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:30.233][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:30.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.235][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.236][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:30.237][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:30.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.239][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.239][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.240][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.242][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.243][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:30.244][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:30.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.246][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.247][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:30.248][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:30.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.249][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.250][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:30.251][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:30.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.253][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.254][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:30.255][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:30.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.256][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.257][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:30.258][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:30.259][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:30.260][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:30.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.262][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.262][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:30.263][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:30.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.265][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.266][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:30.267][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:30.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.268][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.269][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:30.275][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:30.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.277][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.278][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:30.279][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:30.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.281][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.281][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:30.282][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:30.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.284][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.285][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.286][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.288][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.288][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:30.289][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:30.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.291][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.292][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:30.293][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:30.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.294][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.295][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:30.296][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:30.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.298][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.299][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:30.300][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:30.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.301][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.302][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:30.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:30.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:30.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:30.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:30.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:30.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:30.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.314][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:30.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:30.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.317][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:30.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:30.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.321][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:30.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:30.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:30.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:30.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:30.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:30.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:30.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:30.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.335][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:30.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:30.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.338][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:30.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:30.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.342][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:30.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:30.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.346][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:30.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:30.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:30.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:30.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:30.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:30.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:30.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:30.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:30.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:30.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.363][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:30.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:30.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:30.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:30.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:30.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:30.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:30.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:30.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.388][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:30.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:30.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.391][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:30.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:30.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.395][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:30.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:30.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.399][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:30.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:30.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.402][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:30.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:30.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.406][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:30.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:30.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.409][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:30.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:30.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.413][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:30.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:30.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.417][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:30.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:30.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.431][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-01-04 16:04:30.432][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:04:30.433][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:04:30.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:30.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:30.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:30.441][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:30.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:30.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:30.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:30.447][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:04:30.450][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:04:30.451][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-01-04 16:04:30.452][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:04:30.453][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-01-04 16:04:30.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:30.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:30.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:30.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:30.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:30.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:30.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:30.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.472][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:30.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:30.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:30.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:30.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:30.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:30.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:30.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:30.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:30.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:30.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:30.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:30.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:30.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:30.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:30.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:30.505][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:30.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:30.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:30.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:30.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:30.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:30.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:30.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:30.524][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:30.535][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:30.536][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:30.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:30.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:30.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:30.542][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:30.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:30.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.547][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:30.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:30.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:30.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:30.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:30.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:30.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:30.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:30.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:30.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:30.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:30.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:30.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:30.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:30.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:30.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:30.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:30.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:30.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:30.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:30.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:30.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:30.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:30.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:30.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:30.618][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:04:30.621][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:04:30.622][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-01-04 16:04:30.623][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:04:30.624][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-01-04 16:04:30.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:30.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:30.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:30.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:30.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:30.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:30.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:30.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:30.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:30.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:30.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:30.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:30.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:30.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:30.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:30.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:30.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:30.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:30.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:30.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:30.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:30.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:30.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:30.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:30.683][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:04:30.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:30.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:30.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:30.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:30.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:30.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:30.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:30.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:30.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:30.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:30.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:30.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.701][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:30.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:30.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.704][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:30.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:30.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:30.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:30.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:30.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:30.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.715][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:30.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:30.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.723][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:30.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:30.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:30.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:30.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:30.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:30.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.734][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:30.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:30.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:30.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:30.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.741][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:30.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:30.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.745][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:30.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:30.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:30.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:30.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:30.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:30.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.762][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:30.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:30.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.766][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:30.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:30.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.769][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:30.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:30.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.773][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:30.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:30.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.776][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:30.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:30.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.780][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:30.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:30.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.783][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:30.784][private$selectFields]
biodb.TRACE[2025-01-04 16:04:30.785][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:30.786][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:30.787][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:30.787][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:30.788][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:30.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.790][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.791][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:30.792][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:30.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.793][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.794][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:30.795][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:30.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.797][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.798][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:30.799][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:30.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.800][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.801][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:30.802][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:30.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.804][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.805][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:30.806][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:30.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.807][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.808][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:30.809][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:30.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.811][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.812][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.812][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.814][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.815][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:30.816][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:30.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.818][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.818][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:30.819][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:30.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.821][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.822][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:30.823][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:30.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.824][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.825][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:30.826][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:30.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.828][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.829][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:30.830][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:30.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.831][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.832][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:30.833][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:30.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.835][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.836][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:30.837][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:30.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.838][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.839][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:30.840][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:30.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.842][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.843][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:30.844][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:30.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.845][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.846][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:30.847][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:30.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.849][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.850][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:30.851][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:30.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.852][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.853][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.854][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.856][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.857][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:30.858][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:30.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.859][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.860][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:30.861][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:30.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.863][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.868][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:30.869][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:30.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.871][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.872][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:30.873][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:30.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.875][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.876][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:30.877][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:30.878][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:30.879][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:30.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.880][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.881][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:30.882][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:30.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.884][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.885][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:30.886][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:30.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.887][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.888][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:30.889][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:30.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.891][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.891][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:30.892][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:30.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.894][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.895][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:30.896][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:30.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.898][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.898][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:30.899][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:30.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.901][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.902][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.903][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.904][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.905][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:30.906][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:30.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.908][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.909][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:30.910][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:30.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.911][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.912][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:30.913][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:30.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.915][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.916][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:30.917][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:30.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.918][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.919][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:30.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:30.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:30.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:30.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:30.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:30.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:30.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.931][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:30.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:30.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.934][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:30.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:30.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.938][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:30.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:30.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:30.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:30.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:30.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:30.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:30.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:30.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.952][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:30.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:30.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.955][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:30.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:30.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.959][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:30.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:30.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:30.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:30.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:30.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:30.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:30.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:30.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:30.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:30.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.976][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:30.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:30.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.980][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:30.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:30.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.984][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:30.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:30.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.987][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:30.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:30.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.991][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:30.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:30.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:30.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:30.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:30.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.021][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.024][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.028][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.032][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:31.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:31.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.035][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:31.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:31.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.039][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:31.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:31.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.042][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:31.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:31.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.046][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:31.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:31.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.049][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:31.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:31.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.058][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2025-01-04 16:04:31.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:31.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:31.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:31.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:31.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:31.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:31.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:31.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:31.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:31.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:31.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:31.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.075][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:31.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:31.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.078][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:31.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:31.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.082][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.089][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:31.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:31.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.092][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:31.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:31.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:31.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:31.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.099][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:31.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:31.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.103][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.106][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.110][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:31.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:31.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.113][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:31.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:31.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.131][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.134][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.138][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:31.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:31.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.142][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:31.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:31.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.145][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:31.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:31.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.149][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:31.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:31.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.152][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:31.153][private$selectFields]
biodb.TRACE[2025-01-04 16:04:31.154][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:31.155][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:31.156][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:31.163][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:31.164][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:31.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.166][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.167][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:31.168][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:31.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.170][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.171][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.172][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.174][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.174][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:31.175][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:31.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.177][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.178][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:31.179][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:31.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.181][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.181][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.182][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.184][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.185][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:31.186][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:31.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.187][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.188][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.189][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.191][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.192][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.193][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.194][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.195][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.196][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.198][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.199][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:31.200][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:31.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.201][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.202][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:31.203][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:31.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.205][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.206][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:31.207][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:31.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.208][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.209][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:31.210][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:31.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.212][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.213][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.213][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.215][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.216][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:31.217][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:31.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.219][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.219][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:31.220][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:31.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.222][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.223][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.224][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.225][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.226][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:31.227][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:31.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.229][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.230][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.231][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.232][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.233][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.234][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.236][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.237][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.238][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.239][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.240][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:31.241][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:31.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.243][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.243][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:31.244][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:31.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.246][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.247][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:31.248][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:31.249][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:31.250][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:31.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.251][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.252][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:31.253][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:31.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.255][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.255][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.256][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.258][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.259][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:31.260][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:31.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.261][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.262][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:31.263][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:31.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.265][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.266][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.267][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.268][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.269][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.270][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.272][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.273][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.274][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.275][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.276][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.277][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.279][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.280][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:31.281][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:31.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.283][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.284][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:31.285][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:31.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.286][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.287][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:31.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:31.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:31.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:31.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:31.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:31.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:31.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.299][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:31.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:31.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.303][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:31.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:31.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.306][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:31.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:31.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.319][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.327][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:31.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:31.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.330][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:31.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:31.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.334][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:31.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:31.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:31.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:31.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:31.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:31.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:31.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:31.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.353][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.383][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.386][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.390][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.394][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:31.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:31.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.398][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:31.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:31.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.401][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:31.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:31.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.405][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:31.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:31.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.409][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:31.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:31.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.413][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:31.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:31.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.421][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2025-01-04 16:04:31.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:31.423][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:31.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:31.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:31.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:31.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:31.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:31.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:31.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:31.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:31.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:31.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.440][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:31.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:31.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.443][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:31.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:31.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.454][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:31.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:31.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.458][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:31.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:31.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:31.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:31.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.470][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:31.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:31.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.474][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.478][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.481][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:31.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:31.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.485][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:31.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:31.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.502][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.506][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.509][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:31.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:31.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.513][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:31.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:31.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.516][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:31.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:31.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.520][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:31.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:31.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.523][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:31.524][private$selectFields]
biodb.TRACE[2025-01-04 16:04:31.525][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:31.525][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:31.526][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:31.527][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:31.528][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:31.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.530][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.531][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:31.532][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:31.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.533][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.534][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.535][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.537][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.537][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:31.538][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:31.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.540][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.541][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:31.542][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:31.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.543][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.544][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.545][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.547][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.548][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:31.549][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:31.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.551][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.552][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.553][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.554][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.555][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.556][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.558][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.559][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.560][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.562][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.562][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:31.563][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:31.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.565][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.566][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:31.567][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:31.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.569][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.570][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:31.571][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:31.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.573][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.573][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:31.574][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:31.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.576][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.577][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.578][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.580][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.581][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:31.582][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:31.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.583][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.584][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:31.585][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:31.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.587][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.588][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.589][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.590][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.591][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:31.592][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:31.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.594][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.595][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.596][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.597][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.598][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.599][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.601][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.602][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.603][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.604][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.605][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:31.606][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:31.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.608][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.609][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:31.610][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:31.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.611][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.616][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:31.617][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:31.619][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:31.620][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:31.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.622][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.623][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:31.623][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:31.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.625][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.626][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.627][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.629][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.630][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:31.631][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:31.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.632][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.633][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:31.634][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:31.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.636][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.636][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.637][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.639][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.640][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.641][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.643][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.643][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.644][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.646][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.647][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.648][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.649][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.650][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:31.651][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:31.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.653][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.654][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:31.655][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:31.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.656][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.657][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:31.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:31.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:31.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:31.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:31.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:31.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:31.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.669][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:31.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:31.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.672][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:31.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:31.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.676][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:31.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:31.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.690][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:31.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:31.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.693][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:31.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:31.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.697][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:31.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:31.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.700][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:31.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:31.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.704][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:31.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:31.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:31.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:31.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.711][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.714][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.718][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.743][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.746][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.750][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.754][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:31.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:31.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.757][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:31.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:31.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.765][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:31.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:31.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.769][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:31.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:31.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.773][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:31.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:31.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.776][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:31.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:31.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.785][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2025-01-04 16:04:31.786][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:04:31.786][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:04:31.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:31.794][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:31.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:31.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:31.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:31.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:31.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:31.804][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:04:31.806][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:04:31.808][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2025-01-04 16:04:31.809][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:04:31.810][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2025-01-04 16:04:31.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:31.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:31.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:31.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:31.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:31.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:31.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:31.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:31.832][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:04:31.834][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:04:31.836][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2025-01-04 16:04:31.837][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:04:31.838][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2025-01-04 16:04:31.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:31.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:31.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:31.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:31.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:31.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:31.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:31.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:31.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:31.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:31.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:31.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:31.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:31.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:31.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:31.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:31.878][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:04:31.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:31.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:31.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:31.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:31.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:31.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:31.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:31.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:31.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:31.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:31.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:31.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.895][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:31.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:31.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.899][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:31.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:31.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.914][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:31.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:31.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.918][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:31.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:31.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.922][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:31.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:31.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:31.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:31.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.930][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.933][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:31.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.937][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:31.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:31.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.941][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:31.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:31.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:31.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.952][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:31.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.959][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.963][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:31.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.966][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:31.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:31.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.970][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:31.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:31.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.973][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:31.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:31.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.977][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:31.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:31.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.980][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:31.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:31.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.984][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:31.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:31.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.987][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:31.988][private$selectFields]
biodb.TRACE[2025-01-04 16:04:31.989][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:31.990][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:31.990][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:31.991][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:31.992][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:31.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.994][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.995][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:31.996][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:31.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:31.997][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:31.998][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:31.999][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.001][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.002][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:32.003][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:32.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.004][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.005][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:32.006][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:32.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.008][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.008][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.009][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.011][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.012][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:32.013][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:32.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.014][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.015][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.016][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.018][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.019][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.020][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.021][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.022][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.023][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.025][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.026][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:32.027][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:32.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.028][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.029][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:32.030][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:32.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.032][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.033][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:32.034][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:32.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.035][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.036][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:32.037][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:32.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.039][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.040][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:32.041][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:32.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.042][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.043][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.044][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.046][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.047][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:32.048][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:32.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.049][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.050][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:32.051][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:32.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.053][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.054][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.055][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.061][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.062][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:32.063][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:32.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.065][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.066][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.067][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.069][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.070][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.071][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.073][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.074][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.075][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.076][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.077][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:32.078][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:32.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.080][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.081][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:32.082][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:32.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.084][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.085][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:32.086][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:32.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.087][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.088][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:32.089][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:32.090][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:32.091][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:32.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.093][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.094][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:32.095][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:32.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.097][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.098][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.099][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.100][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.101][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:32.102][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:32.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.104][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.105][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:32.106][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:32.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.108][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.109][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.110][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.111][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.112][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.113][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.115][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.116][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.117][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.119][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.120][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.121][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.122][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.123][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:32.124][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:32.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.126][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.127][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:32.128][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:32.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.130][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.131][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:32.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:32.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:32.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:32.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:32.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:32.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:32.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.143][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:32.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:32.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.146][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:32.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:32.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.150][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:32.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:32.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.165][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:32.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:32.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.168][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:32.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:32.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.172][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:32.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:32.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:32.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:32.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:32.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:32.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:32.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:32.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.187][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.225][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.229][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.232][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.236][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:32.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:32.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.239][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:32.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:32.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.243][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:32.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:32.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.247][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:32.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:32.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.250][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:32.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:32.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.254][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:32.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:32.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.262][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-01-04 16:04:32.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:32.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:32.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:32.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:32.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:32.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:32.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:32.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:32.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:32.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:32.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:32.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.279][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:32.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:32.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.282][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:32.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:32.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.293][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:32.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:32.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.296][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:32.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:32.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:32.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:32.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:32.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:32.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.313][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:32.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:32.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.317][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:32.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:32.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.335][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.338][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.342][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:32.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:32.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.345][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:32.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:32.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.349][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:32.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:32.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.352][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:32.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:32.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.356][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:32.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:32.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.364][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:32.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:32.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.369][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:32.369][private$selectFields]
biodb.TRACE[2025-01-04 16:04:32.370][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:32.371][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:32.372][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:32.373][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:32.374][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:32.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.376][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.376][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:32.377][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:32.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.379][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.380][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.381][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.382][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.383][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:32.384][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:32.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.386][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.387][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:32.388][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:32.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.389][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.390][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.391][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.393][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.394][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:32.395][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:32.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.396][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.397][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.398][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.400][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.401][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.402][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.403][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.404][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.405][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.407][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.408][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:32.408][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:32.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.410][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.411][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:32.412][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:32.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.414][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.414][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:32.415][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:32.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.417][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.418][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:32.419][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:32.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.421][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.421][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:32.422][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:32.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.424][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.425][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.426][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.427][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.428][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:32.429][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:32.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.431][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.432][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:32.433][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:32.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.434][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.435][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.436][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.438][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.439][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:32.440][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:32.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.441][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.442][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.443][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.445][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.445][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.446][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.448][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.449][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.450][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.451][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.452][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:32.453][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:32.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.455][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.456][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:32.457][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:32.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.458][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.459][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:32.460][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:32.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.462][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.463][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:32.464][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:32.464][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:32.465][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:32.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.467][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.468][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:32.469][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:32.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.470][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.471][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.472][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.474][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.475][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:32.476][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:32.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.477][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.478][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:32.479][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:32.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.481][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.482][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.483][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.484][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.485][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:32.486][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:32.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.488][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.489][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.490][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.492][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.492][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.493][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.495][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.496][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.497][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.498][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.499][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:32.500][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:32.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.502][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.503][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:32.504][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:32.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.510][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.511][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:32.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:32.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:32.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:32.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:32.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:32.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:32.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.524][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:32.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:32.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.527][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:32.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:32.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.531][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:32.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:32.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.545][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:32.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:32.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.549][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:32.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:32.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.552][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:32.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:32.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:32.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:32.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:32.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:32.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.563][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:32.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:32.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.577][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:32.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:32.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.580][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:32.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:32.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.584][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:32.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:32.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.601][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.608][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.612][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.615][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.619][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:32.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:32.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.622][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:32.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:32.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.626][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:32.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:32.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.630][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:32.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:32.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.633][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:32.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:32.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.637][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:32.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:32.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.646][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-01-04 16:04:32.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:32.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:32.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:32.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:32.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:32.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:32.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:32.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:32.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:32.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:32.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:32.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.668][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:32.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:32.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.672][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:32.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:32.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.682][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:32.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:32.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.686][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:32.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:32.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.689][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:32.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:32.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.693][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:32.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:32.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.700][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.703][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:32.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:32.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.707][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:32.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:32.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.724][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.728][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.731][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:32.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:32.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.735][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:32.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:32.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.738][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:32.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:32.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.742][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:32.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:32.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.745][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:32.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:32.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.749][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:32.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:32.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.752][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:32.753][private$selectFields]
biodb.TRACE[2025-01-04 16:04:32.754][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:32.755][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:32.755][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:32.756][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:32.757][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:32.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.759][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.760][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:32.761][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:32.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.762][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.763][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.764][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.766][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.767][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:32.768][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:32.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.769][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.770][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:32.771][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:32.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.773][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.774][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.775][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.776][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.777][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:32.778][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:32.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.780][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.781][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.782][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.783][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.784][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.785][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.787][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.788][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.789][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.790][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.791][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:32.792][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:32.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.794][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.795][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:32.796][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:32.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.797][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.798][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:32.804][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:32.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.806][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.807][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:32.808][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:32.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.810][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.811][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:32.812][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:32.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.813][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.814][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.815][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.817][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.818][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:32.819][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:32.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.820][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.821][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:32.822][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:32.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.824][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.825][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.826][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.827][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.828][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:32.829][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:32.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.831][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.832][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.833][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.834][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.835][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.836][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.838][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.839][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.839][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.841][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.842][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:32.843][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:32.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.845][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.845][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:32.846][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:32.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.848][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.849][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:32.850][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:32.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.852][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.852][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:32.853][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:32.854][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:32.855][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:32.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.857][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.858][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:32.859][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:32.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.860][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.861][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.862][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.864][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.864][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:32.865][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:32.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.867][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.868][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:32.869][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:32.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.870][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.871][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.872][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.874][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.875][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.876][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.877][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.878][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.879][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.881][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.882][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.882][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.884][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.885][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:32.886][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:32.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.888][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.888][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:32.889][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:32.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.891][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.892][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:32.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:32.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:32.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:32.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:32.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:32.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:32.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.903][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:32.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:32.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.907][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:32.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:32.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.910][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:32.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:32.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:32.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.925][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:32.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:32.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.928][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:32.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:32.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.932][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:32.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:32.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:32.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:32.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.939][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:32.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:32.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:32.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:32.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:32.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:32.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:32.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.986][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.989][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.993][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:32.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:32.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:32.997][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:32.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:32.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.001][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:33.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:33.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.004][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:33.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:33.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.008][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:33.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:33.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.011][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:33.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:33.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.015][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:33.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:33.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.023][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-01-04 16:04:33.024][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:04:33.025][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:04:33.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:33.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:33.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:33.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:33.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:33.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:33.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:33.038][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:04:33.040][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:04:33.042][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b3cd8ddf08f509014f10dc9bf7c1649d".
biodb.TRACE[2025-01-04 16:04:33.043][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:04:33.044][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b3cd8ddf08f509014f10dc9bf7c1649d.content".
biodb.DEBUG[2025-01-04 16:04:33.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:33.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:33.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:33.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:33.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:33.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:33.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:33.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:33.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:33.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:33.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:33.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:33.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:33.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:33.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:33.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:33.085][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:04:33.088][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:04:33.089][cch$loadFileContent] Trying to load 1 files from cache: [1]: "831507e33c6cf42061851262412f5feb".
biodb.TRACE[2025-01-04 16:04:33.090][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:04:33.091][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/831507e33c6cf42061851262412f5feb.content".
biodb.DEBUG[2025-01-04 16:04:33.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:33.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:33.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:33.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:33.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:33.106][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:33.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:33.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:33.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:33.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:33.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:33.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:33.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:33.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:33.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:33.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:33.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:33.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:33.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:33.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:33.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:33.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:33.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:33.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:33.157][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:04:33.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:33.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:33.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:33.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:33.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:33.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:33.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:33.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:33.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:33.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:33.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:33.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.174][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:33.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:33.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.178][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:33.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:33.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.188][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:33.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:33.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.191][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:33.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:33.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:33.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:33.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:33.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:33.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.202][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.209][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.212][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:33.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:33.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:33.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:33.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.230][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:33.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:33.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.234][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:33.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:33.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.237][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:33.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:33.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.241][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:33.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:33.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.249][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:33.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:33.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.253][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:33.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:33.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.257][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:33.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:33.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.261][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:33.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:33.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.264][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:33.265][private$selectFields]
biodb.TRACE[2025-01-04 16:04:33.266][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:33.267][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:33.267][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:33.268][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:33.269][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:33.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.271][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.272][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:33.273][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:33.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.274][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.275][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.276][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.278][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.279][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:33.280][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:33.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.281][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.282][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:33.283][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:33.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.285][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.286][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.287][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.288][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.289][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.290][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.292][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.293][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.294][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.295][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.296][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:33.297][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:33.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.299][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.300][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:33.301][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:33.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.302][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.303][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:33.304][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:33.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.306][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.307][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:33.307][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:33.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.309][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.310][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:33.311][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:33.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.313][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.313][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:33.314][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:33.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.316][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.317][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:33.318][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:33.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.319][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.320][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.321][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.323][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.324][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:33.325][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:33.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.326][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.327][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:33.328][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:33.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.330][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.331][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.332][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.333][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.334][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.335][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.337][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.338][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.339][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.340][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.341][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:33.342][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:33.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.344][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.345][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:33.345][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:33.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.347][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.348][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:33.349][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:33.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.351][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.351][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:33.352][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:33.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.354][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.355][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:33.356][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:33.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.357][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.358][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:33.359][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:33.360][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:33.361][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:33.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.363][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.364][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:33.365][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:33.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.366][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.367][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.368][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.370][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.371][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:33.372][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:33.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.373][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.374][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:33.375][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:33.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.377][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.378][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.379][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.380][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.381][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.382][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.384][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.385][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.386][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.387][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.388][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:33.394][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:33.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.396][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.397][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:33.398][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:33.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.400][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.401][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:33.402][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:33.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.404][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.405][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:33.406][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:33.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.408][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.409][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:33.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:33.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:33.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:33.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:33.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:33.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:33.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.420][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:33.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:33.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.424][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:33.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:33.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.427][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:33.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:33.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.441][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:33.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:33.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.445][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:33.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:33.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.448][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:33.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:33.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:33.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:33.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.456][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:33.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:33.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.459][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:33.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:33.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.463][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.466][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.470][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.473][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.477][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.480][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:33.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:33.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:33.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:33.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:33.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:33.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.505][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:33.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:33.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.508][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:33.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:33.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.512][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:33.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:33.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.516][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:33.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:33.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.519][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:33.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:33.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.523][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:33.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:33.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.526][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:33.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:33.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.530][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:33.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:33.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.534][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:33.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:33.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.548][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-01-04 16:04:33.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:33.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:33.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:33.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:33.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:33.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:33.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:33.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:33.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:33.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:33.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:33.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.566][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:33.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:33.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.570][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:33.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:33.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.580][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:33.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:33.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.584][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:33.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:33.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:33.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:33.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:33.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:33.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.594][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.598][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.601][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.605][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:33.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:33.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:33.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:33.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.622][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:33.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:33.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.626][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:33.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:33.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.629][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:33.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:33.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.633][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:33.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:33.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.636][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:33.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:33.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.640][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:33.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:33.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.643][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:33.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:33.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.647][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:33.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:33.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.650][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:33.651][private$selectFields]
biodb.TRACE[2025-01-04 16:04:33.652][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:33.653][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:33.654][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:33.654][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:33.655][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:33.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.657][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.658][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:33.659][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:33.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.661][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.662][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.663][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.664][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.665][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:33.666][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:33.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.668][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.669][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:33.670][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:33.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.671][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.672][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.673][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.675][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.676][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.677][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.678][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.679][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.680][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.682][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.683][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:33.688][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:33.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.690][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.691][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:33.693][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:33.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.694][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.695][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:33.696][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:33.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.698][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.699][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:33.700][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:33.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.702][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.702][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:33.703][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:33.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.705][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.706][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:33.707][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:33.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.709][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.709][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:33.710][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:33.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.712][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.713][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.714][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.715][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.716][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:33.717][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:33.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.719][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.720][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:33.721][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:33.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.722][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.723][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.724][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.726][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.727][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.728][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.729][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.730][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.731][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.733][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.734][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:33.735][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:33.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.736][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.737][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:33.738][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:33.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.740][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.741][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:33.742][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:33.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.743][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.744][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:33.745][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:33.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.747][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.748][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:33.749][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:33.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.750][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.751][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:33.752][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:33.753][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:33.754][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:33.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.755][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.756][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:33.757][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:33.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.759][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.760][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.761][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.762][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.763][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:33.764][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:33.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.766][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.767][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:33.768][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:33.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.769][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.770][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.771][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.773][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.774][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.774][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.776][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.777][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.778][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.780][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.780][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:33.781][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:33.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.783][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.784][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:33.785][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:33.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.786][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.787][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:33.788][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:33.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.790][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.791][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:33.792][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:33.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.793][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.794][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:33.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:33.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:33.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:33.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:33.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:33.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:33.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.806][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:33.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:33.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.810][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:33.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:33.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.813][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:33.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:33.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.828][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:33.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:33.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.837][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:33.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:33.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.841][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:33.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:33.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.845][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:33.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:33.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:33.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:33.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.852][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:33.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:33.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.856][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.863][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.867][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.870][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.874][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:33.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:33.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:33.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:33.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:33.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:33.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:33.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.899][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:33.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:33.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.902][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:33.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:33.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.906][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:33.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:33.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.909][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:33.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:33.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.913][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:33.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:33.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.916][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:33.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:33.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.920][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:33.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:33.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.923][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:33.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:33.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.927][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:33.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:33.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.936][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-01-04 16:04:33.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:33.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:33.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:33.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:33.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:33.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:33.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:33.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:33.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:33.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:33.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:33.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.953][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:33.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:33.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.956][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:33.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:33.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:33.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.967][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:33.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:33.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.971][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:33.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:33.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.974][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:33.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:33.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:33.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:33.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:33.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.994][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:33.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:33.998][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:33.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:34.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:34.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:34.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:34.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.015][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:34.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:34.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.019][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:34.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:34.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.022][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:34.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:34.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.026][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:34.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:34.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.029][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:34.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:34.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.033][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:34.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:34.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.036][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:34.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:34.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.040][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:34.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:34.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.043][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:34.044][private$selectFields]
biodb.TRACE[2025-01-04 16:04:34.045][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:34.046][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:34.047][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:34.047][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:34.048][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:34.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.050][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.051][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:34.052][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:34.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.053][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.054][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:34.055][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:34.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.057][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.058][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:34.059][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:34.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.060][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.061][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:34.062][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:34.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.064][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.065][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:34.066][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:34.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.067][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.068][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:34.069][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:34.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.071][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.072][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.072][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.074][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.075][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:34.076][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:34.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.078][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.078][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:34.079][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:34.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.081][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.082][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:34.083][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:34.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.084][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.085][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:34.086][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:34.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.088][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.089][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:34.090][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:34.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.091][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.092][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:34.093][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:34.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.095][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.096][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:34.097][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:34.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.098][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.099][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:34.100][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:34.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.102][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.103][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:34.104][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:34.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.106][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.106][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:34.107][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:34.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.109][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.110][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:34.111][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:34.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.113][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.113][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:34.114][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:34.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.116][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.117][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.118][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.120][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.121][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:34.122][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:34.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.123][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.129][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:34.130][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:34.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.132][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.133][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:34.134][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:34.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.136][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.137][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:34.138][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:34.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.140][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.141][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:34.142][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:34.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.144][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.145][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:34.146][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:34.146][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:34.147][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:34.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.149][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.150][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:34.151][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:34.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.153][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.153][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:34.154][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:34.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.156][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.157][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:34.158][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:34.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.159][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.160][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:34.161][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:34.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.163][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.164][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:34.165][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:34.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.166][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.167][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.168][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.170][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.171][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:34.172][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:34.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.173][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.174][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:34.175][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:34.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.177][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.178][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:34.179][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:34.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.180][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.181][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:34.182][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:34.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.184][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.185][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:34.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:34.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:34.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:34.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:34.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:34.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:34.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.196][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:34.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:34.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.200][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:34.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:34.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.203][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:34.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:34.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:34.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:34.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:34.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:34.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:34.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:34.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.217][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:34.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:34.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.221][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:34.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:34.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.224][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:34.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:34.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.228][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:34.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:34.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:34.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:34.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:34.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:34.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:34.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:34.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:34.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:34.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:34.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:34.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:34.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:34.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:34.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:34.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:34.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:34.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.271][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:34.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:34.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.427][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:34.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:34.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.430][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:34.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:34.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.434][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:34.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:34.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.437][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:34.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:34.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.441][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:34.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:34.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.444][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:34.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:34.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.448][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:34.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:34.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:34.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:34.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.460][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-01-04 16:04:34.461][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:04:34.461][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:04:34.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:34.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:34.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:34.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:34.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:34.471][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:34.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:34.474][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:04:34.477][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:04:34.478][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26d0872875c47c33e8205aa7124e0486".
biodb.TRACE[2025-01-04 16:04:34.479][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:04:34.480][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26d0872875c47c33e8205aa7124e0486.content".
biodb.DEBUG[2025-01-04 16:04:34.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:34.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:34.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:34.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:34.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:34.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:34.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:34.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:34.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:34.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:34.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:34.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:34.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:34.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:34.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:34.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:34.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:34.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:34.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:34.526][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:34.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:34.528][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:34.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:34.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:34.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:34.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:34.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:34.546][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:34.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:34.547][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:34.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:34.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:34.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:34.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:34.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:34.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:34.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:34.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:34.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:34.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:34.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:34.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:34.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:34.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:34.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:34.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:34.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:34.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:34.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:34.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:34.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:34.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:34.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:34.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:34.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:34.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:34.625][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:34.626][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:34.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:34.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:34.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:34.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:34.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:34.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:34.649][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:04:34.652][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:04:34.654][cch$loadFileContent] Trying to load 1 files from cache: [1]: "357534c211a0779cb44e196fcebae6c0".
biodb.TRACE[2025-01-04 16:04:34.655][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:04:34.656][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/357534c211a0779cb44e196fcebae6c0.content".
biodb.DEBUG[2025-01-04 16:04:34.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:34.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:34.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:34.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:34.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:34.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:34.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:34.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:34.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:34.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:34.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:34.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:34.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:34.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:34.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:34.692][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.696][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:34.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:34.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:34.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:34.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:34.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:34.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:34.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:34.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:34.728][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:04:34.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:34.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:34.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:34.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:34.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:34.741][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:34.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:34.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:34.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:34.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:34.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:34.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.750][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:34.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:34.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.753][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:34.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:34.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:34.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:34.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:34.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:34.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.764][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:34.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:34.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.767][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:34.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:34.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.771][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:34.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:34.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.774][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:34.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:34.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:34.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:34.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:34.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:34.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.784][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:34.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:34.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.788][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:34.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:34.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:34.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:34.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:34.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:34.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.805][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:34.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:34.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.809][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:34.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:34.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.812][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:34.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:34.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.816][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:34.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:34.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.819][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:34.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:34.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.823][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:34.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:34.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.826][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:34.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:34.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.830][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:34.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:34.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.833][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:34.834][private$selectFields]
biodb.TRACE[2025-01-04 16:04:34.835][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:34.836][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:34.837][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:34.837][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:34.838][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:34.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.840][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.841][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:34.842][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:34.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.843][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.844][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:34.845][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:34.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.847][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.848][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:34.849][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:34.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.850][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.851][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:34.852][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:34.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.854][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.855][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:34.856][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:34.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.857][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.858][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:34.859][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:34.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.861][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.862][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.863][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.864][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.865][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:34.866][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:34.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.868][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.869][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:34.870][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:34.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.871][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.872][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:34.873][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:34.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.875][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.876][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:34.877][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:34.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.878][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.879][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:34.880][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:34.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.882][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.883][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:34.884][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:34.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.886][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.886][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:34.887][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:34.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.889][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.890][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:34.891][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:34.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.893][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.893][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:34.894][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:34.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.896][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.897][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:34.898][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:34.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.900][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.900][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:34.901][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:34.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.903][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.904][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:34.905][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:34.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.906][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.907][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.908][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.910][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.911][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:34.912][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:34.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.913][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.914][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:34.915][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:34.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.917][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.918][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:34.919][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:34.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.920][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.921][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:34.922][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:34.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.924][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.925][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:34.926][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:34.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.927][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.928][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:34.929][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:34.930][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:34.931][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:34.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.933][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.933][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:34.934][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:34.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.936][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.937][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:34.938][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:34.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.940][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.940][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:34.941][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:34.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.943][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.944][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:34.945][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:34.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.947][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.947][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:34.948][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:34.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.950][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.951][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:34.952][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:34.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.954][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.954][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.955][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:34.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.957][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.958][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:34.959][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:34.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.960][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.961][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:34.962][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:34.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.964][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.965][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:34.966][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:34.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.967][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.968][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:34.969][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:34.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.971][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.972][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:34.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:34.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:34.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:34.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:34.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:34.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:34.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.984][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:34.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:34.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.987][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:34.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:34.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.991][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:34.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:34.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:34.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:34.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:34.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:34.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:34.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.005][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:35.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:35.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.009][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:35.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:35.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.013][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:35.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:35.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:35.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:35.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:35.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:35.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:35.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:35.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.031][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.034][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.041][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:35.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:35.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.045][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:35.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:35.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.048][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:35.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:35.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.059][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.073][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.077][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.080][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.084][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:35.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:35.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.087][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:35.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:35.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.091][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:35.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:35.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.094][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:35.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:35.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.098][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:35.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:35.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.101][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:35.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:35.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.110][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2025-01-04 16:04:35.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:35.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:35.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:35.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:35.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:35.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:35.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:35.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:35.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:35.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:35.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:35.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.127][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:35.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:35.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.131][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:35.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:35.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.141][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:35.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:35.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.145][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:35.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:35.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.148][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:35.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:35.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:35.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:35.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.159][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.162][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:35.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:35.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.166][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:35.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:35.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.184][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.187][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.191][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:35.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:35.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.194][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:35.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:35.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.198][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:35.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:35.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.201][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:35.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:35.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.205][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:35.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:35.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.208][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:35.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:35.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.212][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:35.213][private$selectFields]
biodb.TRACE[2025-01-04 16:04:35.214][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:35.214][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:35.215][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:35.216][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:35.217][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:35.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.219][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.220][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:35.221][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:35.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.222][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.223][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.224][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.226][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.227][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:35.228][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:35.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.229][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.230][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:35.231][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:35.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.233][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.234][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.235][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.236][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.237][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:35.238][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:35.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.240][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.241][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.241][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.243][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.244][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.245][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.247][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.248][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.248][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.250][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.251][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:35.252][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:35.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.254][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.255][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:35.255][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:35.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.257][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.258][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:35.259][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:35.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.261][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.262][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:35.262][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:35.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.264][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.265][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:35.266][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:35.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.268][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.269][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.269][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.271][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.272][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:35.273][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:35.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.275][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.276][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:35.276][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:35.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.278][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.279][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.280][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.282][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.283][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:35.283][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:35.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.285][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.286][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.287][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.289][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.290][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.290][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.292][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.293][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.294][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.296][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.297][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:35.297][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:35.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.299][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.300][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:35.301][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:35.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.303][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.303][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:35.304][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:35.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.306][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.307][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:35.308][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:35.309][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:35.313][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:35.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.315][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.316][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:35.317][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:35.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.318][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.319][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.320][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.322][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.323][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:35.324][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:35.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.325][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.326][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:35.327][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:35.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.329][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.330][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.330][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.332][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.333][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.334][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.336][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.336][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.337][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.339][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.340][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.341][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.342][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.343][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:35.344][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:35.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.346][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.347][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:35.348][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:35.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.349][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.350][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:35.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:35.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:35.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:35.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:35.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:35.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:35.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.362][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:35.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:35.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.365][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:35.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:35.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.369][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:35.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:35.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.383][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:35.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:35.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.386][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:35.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:35.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.390][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:35.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:35.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:35.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:35.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:35.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:35.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:35.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:35.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.436][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.439][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.443][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.446][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:35.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:35.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.450][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:35.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:35.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.454][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:35.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:35.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.457][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:35.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:35.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.461][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:35.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:35.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.464][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:35.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:35.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.473][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2025-01-04 16:04:35.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:35.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:35.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:35.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:35.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:35.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:35.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:35.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:35.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:35.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:35.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:35.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.490][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:35.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:35.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.493][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:35.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:35.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.514][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:35.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:35.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.518][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:35.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:35.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.522][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:35.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:35.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.526][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:35.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:35.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.530][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.534][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.537][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:35.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:35.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.541][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:35.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:35.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.561][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.565][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.569][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:35.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:35.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.573][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:35.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:35.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.577][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:35.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:35.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.581][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:35.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:35.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.585][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:35.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:35.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.589][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:35.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:35.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.593][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:35.594][private$selectFields]
biodb.TRACE[2025-01-04 16:04:35.595][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:35.596][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:35.597][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:35.598][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:35.599][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:35.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.601][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.602][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:35.603][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:35.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.604][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.605][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.606][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.608][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.609][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:35.610][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:35.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.612][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.613][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:35.614][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:35.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.616][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.632][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.634][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.635][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.636][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:35.637][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:35.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.639][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.640][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.641][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.643][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.644][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.645][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.647][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.648][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.649][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.651][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.652][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:35.653][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:35.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.655][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.656][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:35.657][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:35.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.659][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.660][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:35.661][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:35.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.662][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.663][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:35.665][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:35.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.666][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.667][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:35.668][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:35.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.670][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.671][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.672][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.674][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.675][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:35.676][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:35.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.678][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.679][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:35.680][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:35.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.682][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.683][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.684][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.686][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.687][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:35.688][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:35.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.690][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.691][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.692][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.694][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.695][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.696][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.698][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.699][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.700][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.701][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.702][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:35.703][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:35.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.705][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.706][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:35.707][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:35.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.709][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.710][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:35.711][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:35.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.713][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.714][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:35.715][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:35.716][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:35.717][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:35.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.719][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.719][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:35.720][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:35.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.722][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.723][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.724][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.726][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.727][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:35.728][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:35.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.730][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.731][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:35.732][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:35.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.734][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.735][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.736][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.737][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.738][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.739][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.741][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.742][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.743][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.745][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.746][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.747][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.749][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.750][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:35.751][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:35.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.753][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.753][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:35.754][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:35.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.756][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.757][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:35.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:35.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:35.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:35.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:35.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:35.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:35.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.771][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:35.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:35.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.775][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:35.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:35.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.778][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:35.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:35.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:35.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.794][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:35.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:35.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.798][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:35.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:35.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.802][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:35.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:35.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.806][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:35.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:35.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:35.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:35.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:35.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:35.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:35.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:35.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.840][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.851][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.855][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.858][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:35.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.862][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:35.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:35.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.865][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:35.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:35.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.869][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:35.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:35.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.872][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:35.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:35.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.876][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:35.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:35.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.879][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:35.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:35.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.888][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2025-01-04 16:04:35.889][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:04:35.890][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-01-04 16:04:35.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.902][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.917][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:35.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:35.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:35.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:35.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:35.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:35.952][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:35.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:35.955][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:04:35.958][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:04:35.959][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-01-04 16:04:35.960][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:04:35.961][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-01-04 16:04:35.964][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:04:35.967][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:04:35.968][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-01-04 16:04:35.969][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:04:35.970][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-01-04 16:04:35.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:35.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:35.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:35.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:35.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:35.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:35.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:35.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:35.988][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:35.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:35.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:35.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:35.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:35.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:35.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:35.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:35.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:36.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:36.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:36.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:36.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:36.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:36.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:36.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:36.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:36.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:36.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:36.030][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:04:36.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:36.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:36.033][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:36.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:36.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:36.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:36.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:36.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:36.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:36.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:36.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:36.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.047][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:36.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:36.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.051][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:36.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:36.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.061][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:36.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:36.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.065][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:36.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:36.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.068][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:36.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:36.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.072][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:36.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:36.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.082][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.086][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.104][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.107][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.111][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:36.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:36.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.114][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:36.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:36.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.118][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:36.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:36.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.121][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:36.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:36.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.125][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:36.126][private$selectFields]
biodb.TRACE[2025-01-04 16:04:36.126][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:36.127][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:36.128][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:36.129][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:36.130][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:36.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.132][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.133][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:36.134][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:36.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.135][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.136][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.137][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.139][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.140][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:36.140][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:36.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.142][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.143][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:36.144][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:36.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.146][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.147][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.147][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.149][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.150][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.151][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.153][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.153][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.154][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.156][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.157][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.158][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.160][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.160][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.161][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.163][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.164][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:36.165][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:36.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.167][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.167][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:36.168][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:36.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.170][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.171][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:36.172][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:36.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.174][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.174][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:36.175][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:36.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.177][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.178][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.179][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.181][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.182][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:36.182][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:36.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.184][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.185][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:36.186][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:36.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.188][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.189][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.190][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.191][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.192][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.193][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.195][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.196][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.197][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.198][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.199][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.200][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.202][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.203][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.204][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.205][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.206][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:36.207][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:36.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.209][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.210][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:36.210][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:36.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.212][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.213][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:36.214][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:36.215][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:36.216][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:36.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.217][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.218][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:36.219][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:36.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.221][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.222][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.223][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.224][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.225][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:36.230][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:36.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.232][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.233][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:36.234][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:36.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.235][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.236][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.237][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.239][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.240][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.241][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.242][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.243][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.244][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.246][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.246][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.247][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.249][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.250][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.251][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.252][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.253][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:36.254][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:36.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.256][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.257][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:36.258][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:36.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.259][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.260][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:36.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:36.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:36.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:36.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:36.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:36.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:36.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.272][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:36.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:36.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.275][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:36.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:36.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.279][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:36.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:36.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.293][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:36.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:36.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.296][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:36.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:36.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.300][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:36.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:36.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:36.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:36.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:36.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:36.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:36.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:36.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.324][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.328][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.331][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.356][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.360][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.363][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.367][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:36.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:36.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.370][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:36.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:36.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.374][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:36.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:36.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.377][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:36.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:36.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.381][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:36.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:36.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.384][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:36.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:36.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.393][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-01-04 16:04:36.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:36.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:36.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:36.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:36.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:36.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:36.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:36.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:36.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:36.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:36.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:36.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.410][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:36.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:36.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.414][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:36.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:36.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.424][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:36.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:36.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.428][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:36.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:36.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.431][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:36.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:36.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.435][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:36.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:36.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.442][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.445][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.449][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.453][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.467][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.470][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.474][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:36.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:36.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.477][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:36.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:36.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.481][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:36.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:36.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.484][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:36.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:36.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.488][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:36.489][private$selectFields]
biodb.TRACE[2025-01-04 16:04:36.490][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:36.491][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:36.492][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:36.492][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:36.493][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:36.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.495][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.496][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:36.497][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:36.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.499][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.499][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.500][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.502][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.503][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:36.504][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:36.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.506][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.506][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:36.507][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:36.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.509][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.510][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.511][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.516][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.517][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.518][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.520][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.521][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.521][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.523][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.524][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.525][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.527][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.527][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.528][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.530][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.531][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:36.532][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:36.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.533][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.534][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:36.535][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:36.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.537][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.538][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:36.539][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:36.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.540][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.541][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:36.542][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:36.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.544][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.544][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.545][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.547][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.548][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:36.549][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:36.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.551][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.551][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:36.552][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:36.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.554][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.555][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.556][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.557][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.558][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.559][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.561][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.562][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.563][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.564][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.565][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.566][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.568][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.569][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.569][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.571][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.572][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:36.573][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:36.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.575][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.575][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:36.576][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:36.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.578][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.579][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:36.580][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:36.581][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:36.582][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:36.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.583][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.584][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:36.585][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:36.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.587][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.587][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.588][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.590][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.591][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:36.592][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:36.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.593][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.594][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:36.595][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:36.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.597][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.598][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.599][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.600][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.601][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.602][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.604][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.604][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.605][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.607][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.608][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.609][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.610][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.611][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.612][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.614][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.615][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:36.616][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:36.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.617][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.618][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:36.619][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:36.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.621][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.622][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:36.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:36.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:36.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:36.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:36.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:36.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:36.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.633][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:36.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:36.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.637][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:36.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:36.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.640][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:36.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:36.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.655][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:36.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:36.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.658][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:36.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:36.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.662][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:36.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:36.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.665][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:36.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:36.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:36.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:36.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.672][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:36.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:36.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.676][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.679][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.686][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.690][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.693][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.718][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.722][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.725][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.729][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:36.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:36.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.733][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:36.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:36.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.736][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:36.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:36.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.740][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:36.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:36.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.743][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:36.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:36.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.747][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:36.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:36.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.756][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-01-04 16:04:36.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:36.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:36.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:36.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:36.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:36.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:36.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:36.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:36.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:36.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:36.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:36.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.773][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:36.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:36.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.776][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:36.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:36.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.787][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:36.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:36.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.790][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:36.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:36.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.794][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:36.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:36.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.801][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:36.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:36.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.808][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.811][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.815][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.832][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.836][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.839][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:36.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:36.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.843][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:36.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:36.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.846][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:36.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:36.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.850][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:36.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:36.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.853][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:36.854][private$selectFields]
biodb.TRACE[2025-01-04 16:04:36.855][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:36.855][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:36.856][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:36.857][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:36.858][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:36.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.860][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.861][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:36.862][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:36.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.863][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.864][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.865][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.867][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.867][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:36.868][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:36.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.870][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.871][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:36.872][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:36.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.873][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.874][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.875][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.877][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.878][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.879][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.880][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.881][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.882][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.884][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.885][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.885][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.887][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.888][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.889][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.891][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.891][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:36.892][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:36.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.894][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.895][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:36.896][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:36.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.897][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.898][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:36.899][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:36.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.901][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.902][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:36.903][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:36.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.904][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.905][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.906][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.908][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.908][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:36.909][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:36.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.911][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.912][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:36.913][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:36.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.914][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.915][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.916][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.918][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.919][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.920][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:36.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.921][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.922][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.923][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.925][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.926][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.927][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.928][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.929][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.930][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.932][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.933][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:36.934][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:36.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.935][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.936][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:36.937][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:36.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.939][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.940][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:36.941][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:36.942][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:36.942][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:36.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.944][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.945][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:36.946][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:36.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.948][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.948][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.949][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:36.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.951][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.952][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:36.953][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:36.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.954][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.955][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:36.956][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:36.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.958][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.959][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.960][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:36.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.961][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.962][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.963][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:36.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.965][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.966][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.967][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:36.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.968][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.969][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.970][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:36.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.972][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.973][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:36.973][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:36.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.975][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.976][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:36.977][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:36.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.979][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.980][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:36.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:36.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:36.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:36.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:36.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:36.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:36.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.991][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:36.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:36.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.995][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:36.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:36.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:36.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:36.998][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:36.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:37.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.005][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.012][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:37.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:37.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.016][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:37.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:37.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.019][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:37.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:37.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.023][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:37.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:37.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:37.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:37.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:37.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:37.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.034][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.037][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.041][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.066][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.069][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.073][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.076][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:37.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:37.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.080][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:37.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:37.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.087][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:37.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:37.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.091][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:37.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:37.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.094][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:37.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:37.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.098][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:37.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:37.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.106][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-01-04 16:04:37.107][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:04:37.108][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:04:37.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:37.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:37.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:37.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:37.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:37.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:37.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:37.121][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:04:37.123][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:04:37.124][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-01-04 16:04:37.126][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:04:37.127][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-01-04 16:04:37.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:37.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:37.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:37.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:37.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:37.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:37.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:37.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.145][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:37.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:37.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:37.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:37.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:37.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:37.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:37.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:37.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:37.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:37.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:37.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:37.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:37.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:37.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:37.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:37.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:37.186][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:04:37.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:37.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:37.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:37.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:37.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:37.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:37.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:37.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:37.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:37.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:37.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:37.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.203][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:37.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:37.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.207][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:37.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:37.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.217][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:37.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:37.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.221][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:37.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:37.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:37.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:37.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.228][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:37.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:37.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.238][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:37.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:37.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.242][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:37.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:37.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.259][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.263][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.266][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:37.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:37.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.270][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:37.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:37.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.273][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:37.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:37.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.277][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:37.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:37.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.280][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:37.281][private$selectFields]
biodb.TRACE[2025-01-04 16:04:37.282][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:37.283][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:37.284][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:37.284][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:37.285][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:37.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.287][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.288][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:37.289][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:37.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.290][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.291][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.292][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.294][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.295][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:37.296][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:37.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.297][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.298][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:37.299][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:37.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.301][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.302][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.303][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.304][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.305][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:37.306][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:37.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.308][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.309][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.310][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.311][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.312][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.313][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.315][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.316][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.317][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.318][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.319][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:37.320][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:37.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.322][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.323][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:37.324][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:37.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.325][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.326][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:37.327][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:37.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.329][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.330][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:37.331][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:37.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.332][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.333][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.334][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.336][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.337][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:37.337][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:37.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.339][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.340][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:37.341][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:37.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.343][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.343][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.344][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.346][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.347][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:37.348][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:37.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.350][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.350][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.351][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.353][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.354][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.355][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.357][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.357][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.358][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.360][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.361][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:37.362][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:37.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.364][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.364][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:37.365][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:37.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.371][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.372][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:37.373][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:37.374][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:37.375][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:37.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.376][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.377][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:37.378][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:37.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.380][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.381][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.382][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.383][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.384][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:37.385][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:37.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.387][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.387][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:37.388][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:37.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.390][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.391][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.392][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.393][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.394][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:37.395][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:37.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.397][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.398][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.399][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.400][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.401][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.402][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.404][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.405][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.406][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.407][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.408][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:37.409][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:37.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.411][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.411][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:37.412][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:37.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.414][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.415][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:37.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:37.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:37.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:37.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:37.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:37.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:37.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.426][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:37.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:37.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.430][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:37.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:37.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.433][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:37.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:37.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.447][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:37.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:37.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.451][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:37.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:37.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.454][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:37.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:37.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.458][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:37.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:37.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:37.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:37.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:37.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:37.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.468][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.479][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:37.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:37.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.482][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:37.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:37.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.486][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:37.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:37.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.511][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.514][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.518][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.522][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:37.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:37.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.525][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:37.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:37.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.529][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:37.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:37.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.532][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:37.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:37.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.536][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:37.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:37.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.539][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:37.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:37.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.548][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-01-04 16:04:37.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:37.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:37.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:37.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:37.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:37.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:37.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:37.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:37.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:37.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:37.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:37.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.565][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:37.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:37.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.569][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:37.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:37.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.579][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:37.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:37.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.583][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:37.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:37.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:37.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:37.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:37.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:37.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.600][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:37.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:37.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.604][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:37.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:37.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.621][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.625][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.628][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:37.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:37.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.632][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:37.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:37.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.635][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:37.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:37.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.639][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:37.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:37.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.642][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:37.643][private$selectFields]
biodb.TRACE[2025-01-04 16:04:37.644][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:37.645][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:37.646][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:37.647][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:37.648][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:37.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.649][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.650][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:37.655][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:37.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.657][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.658][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.659][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.660][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.661][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:37.662][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:37.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.664][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.665][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:37.666][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:37.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.668][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.669][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.669][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.671][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.672][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:37.673][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:37.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.675][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.676][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.677][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.678][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.679][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.680][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.682][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.683][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.683][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.685][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.686][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:37.687][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:37.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.689][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.689][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:37.690][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:37.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.692][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.693][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:37.694][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:37.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.695][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.696][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:37.697][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:37.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.699][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.700][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.701][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.702][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.703][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:37.704][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:37.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.706][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.707][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:37.708][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:37.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.709][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.710][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.711][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.713][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.713][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:37.714][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:37.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.716][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.717][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.718][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.719][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.720][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.721][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.723][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.724][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.725][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.726][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.727][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:37.728][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:37.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.730][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.731][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:37.732][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:37.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.733][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.734][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:37.735][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:37.736][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:37.737][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:37.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.738][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.739][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:37.740][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:37.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.742][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.743][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.743][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.745][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.746][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:37.747][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:37.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.749][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.749][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:37.750][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:37.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.752][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.753][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.754][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.755][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.756][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.757][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.759][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.760][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.761][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.762][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.763][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.764][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.766][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.766][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:37.767][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:37.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.769][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.770][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:37.771][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:37.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.772][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.773][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:37.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:37.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:37.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:37.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:37.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:37.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:37.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.785][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:37.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:37.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.789][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:37.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:37.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.792][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:37.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:37.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.806][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:37.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:37.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.810][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:37.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:37.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.813][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:37.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:37.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:37.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:37.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:37.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:37.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:37.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:37.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.831][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.835][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.838][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.860][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.863][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.867][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.870][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:37.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:37.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.874][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:37.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:37.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.877][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:37.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:37.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.881][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:37.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:37.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.884][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:37.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:37.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.888][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:37.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:37.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.896][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2025-01-04 16:04:37.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:37.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:37.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:37.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:37.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:37.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:37.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:37.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:37.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:37.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:37.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:37.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.913][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:37.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:37.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.917][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:37.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:37.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:37.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.927][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:37.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:37.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.931][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:37.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:37.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:37.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:37.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.942][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:37.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:37.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.949][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:37.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.952][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:37.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:37.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.955][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:37.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:37.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:37.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:37.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.973][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.976][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:37.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.980][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:37.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:37.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.983][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:37.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:37.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.987][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:37.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:37.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.990][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:37.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:37.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:37.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:37.994][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:37.995][private$selectFields]
biodb.TRACE[2025-01-04 16:04:37.995][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:37.996][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:37.997][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:37.998][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:37.999][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:38.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.000][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.001][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:38.002][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:38.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.004][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.005][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.006][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.007][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.008][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:38.009][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:38.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.011][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.012][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:38.012][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:38.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.014][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.015][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.016][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.018][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.018][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:38.019][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:38.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.021][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.022][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.023][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.025][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.025][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.026][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.028][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.029][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.030][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.031][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.032][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:38.033][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:38.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.035][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.036][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:38.037][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:38.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.038][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.039][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:38.040][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:38.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.042][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.043][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:38.044][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:38.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.045][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.046][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.047][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.049][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.050][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:38.050][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:38.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.052][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.053][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:38.054][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:38.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.056][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.056][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.057][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.059][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.060][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:38.061][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:38.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.063][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.064][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.064][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.066][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.067][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.068][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.070][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.071][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.072][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.073][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.074][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:38.075][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:38.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.077][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.078][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:38.079][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:38.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.080][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.081][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:38.082][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:38.083][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:38.084][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:38.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.086][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.087][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:38.088][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:38.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.089][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.090][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.091][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.093][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.094][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:38.095][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:38.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.096][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.097][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:38.098][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:38.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.100][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.101][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.102][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.103][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.104][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.105][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.107][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.108][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.109][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.110][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.111][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.112][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.114][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.115][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:38.116][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:38.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.117][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.118][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:38.119][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:38.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.121][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.122][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:38.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:38.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:38.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:38.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:38.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:38.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:38.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.134][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:38.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:38.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.137][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:38.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:38.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.141][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:38.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:38.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.155][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:38.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:38.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.159][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:38.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:38.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.162][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:38.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:38.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.166][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:38.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:38.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.170][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:38.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:38.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:38.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:38.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.177][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.181][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.184][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.209][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.213][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.217][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.220][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:38.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:38.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.228][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:38.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:38.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.231][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:38.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:38.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.235][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:38.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:38.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.238][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:38.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:38.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.242][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:38.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:38.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.250][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2025-01-04 16:04:38.251][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:04:38.252][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:04:38.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:38.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:38.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:38.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:38.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:38.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:38.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:38.265][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:04:38.267][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:04:38.269][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-01-04 16:04:38.270][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:04:38.271][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-01-04 16:04:38.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:38.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:38.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:38.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:38.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:38.281][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:38.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:38.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:38.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:38.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:38.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:38.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:38.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:38.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:38.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:38.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:38.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:38.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:38.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:38.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:38.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:38.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:38.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:38.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:38.331][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:04:38.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:38.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:38.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:38.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:38.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:38.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:38.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:38.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:38.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:38.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:38.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:38.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.349][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:38.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:38.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.352][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:38.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:38.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.363][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:38.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:38.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.366][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:38.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:38.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.370][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:38.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:38.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.373][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:38.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:38.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.380][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.384][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:38.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:38.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.387][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:38.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:38.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.405][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.409][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:38.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:38.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.416][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:38.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:38.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.419][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:38.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:38.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.423][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:38.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:38.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.426][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:38.427][private$selectFields]
biodb.TRACE[2025-01-04 16:04:38.428][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:38.429][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:38.430][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:38.431][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:38.432][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:38.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.433][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.434][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:38.435][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:38.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.437][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.438][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.439][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.440][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.441][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:38.442][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:38.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.444][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.445][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:38.446][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:38.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.447][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.448][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.449][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.451][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.452][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:38.453][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:38.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.454][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.455][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.456][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.458][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.459][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.460][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.461][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.462][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.463][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.465][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.466][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:38.467][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:38.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.468][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.469][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:38.470][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:38.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.472][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.473][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:38.474][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:38.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.475][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.476][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:38.477][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:38.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.479][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.480][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.481][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.482][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.483][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:38.484][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:38.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.486][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.487][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:38.488][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:38.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.489][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.490][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.491][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.493][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.494][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:38.495][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:38.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.496][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.497][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.498][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.500][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.501][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.502][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.503][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.504][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.505][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.507][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.508][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:38.513][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:38.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.515][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.516][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:38.516][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:38.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.518][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.519][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:38.520][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:38.521][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:38.522][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:38.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.523][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.524][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:38.525][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:38.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.527][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.528][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.529][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.530][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.531][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:38.532][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:38.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.534][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.535][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:38.536][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:38.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.537][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.538][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.539][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.541][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.542][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:38.543][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:38.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.544][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.545][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.546][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.548][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.549][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.550][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.551][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.552][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.553][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.555][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.556][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:38.556][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:38.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.558][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.559][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:38.560][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:38.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.562][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.563][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:38.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:38.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:38.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:38.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:38.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:38.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:38.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.574][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:38.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:38.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.578][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:38.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:38.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.581][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:38.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:38.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.595][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:38.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:38.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.599][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:38.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:38.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.602][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:38.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:38.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:38.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:38.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.609][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:38.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:38.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.613][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:38.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:38.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.627][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:38.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:38.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.631][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:38.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:38.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.634][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:38.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:38.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.641][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.659][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.663][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.666][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.670][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:38.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:38.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.674][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:38.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:38.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.677][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:38.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:38.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.681][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:38.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:38.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.684][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:38.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:38.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.688][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:38.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:38.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.697][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2025-01-04 16:04:38.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:38.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:38.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:38.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:38.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:38.705][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:38.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:38.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:38.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:38.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:38.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:38.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.714][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:38.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:38.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.717][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:38.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:38.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.728][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:38.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:38.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.731][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:38.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:38.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:38.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:38.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:38.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:38.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.749][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:38.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:38.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.752][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:38.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:38.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.770][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.774][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.777][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:38.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:38.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.781][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:38.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:38.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.784][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:38.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:38.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.788][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:38.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:38.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.791][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:38.792][private$selectFields]
biodb.TRACE[2025-01-04 16:04:38.793][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:38.794][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:38.799][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:38.800][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:38.800][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:38.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.802][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.803][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:38.804][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:38.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.806][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.806][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.807][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.809][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.810][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:38.811][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:38.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.812][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.813][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:38.814][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:38.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.816][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.817][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.818][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.819][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.820][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:38.821][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:38.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.823][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.824][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.824][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.826][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.827][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.828][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.830][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.830][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.831][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.833][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.834][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:38.835][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:38.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.836][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.837][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:38.838][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:38.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.840][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.841][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:38.842][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:38.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.843][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.844][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:38.845][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:38.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.847][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.848][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.849][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.850][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.851][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:38.852][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:38.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.854][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.855][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:38.856][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:38.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.857][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.858][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.859][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.861][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.861][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:38.862][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:38.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.864][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.865][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.866][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.867][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.868][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.869][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.871][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.872][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.873][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.874][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.875][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:38.876][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:38.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.878][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.879][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:38.880][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:38.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.881][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.882][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:38.883][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:38.884][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:38.885][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:38.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.886][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.887][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:38.888][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:38.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.890][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.891][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.892][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.893][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.894][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:38.895][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:38.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.897][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.897][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:38.898][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:38.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.900][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.901][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.902][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.903][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.904][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.905][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.907][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.908][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.909][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.910][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.911][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.912][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:38.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.914][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.915][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:38.916][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:38.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.917][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.918][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:38.919][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:38.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.921][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.922][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:38.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:38.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:38.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:38.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:38.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:38.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:38.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.933][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:38.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:38.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.937][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:38.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:38.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.941][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:38.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:38.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:38.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.955][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:38.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:38.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.958][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:38.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:38.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.962][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:38.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:38.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:38.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:38.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:38.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:38.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:38.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:38.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.976][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.980][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:38.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:38.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:38.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:38.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:38.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.008][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.012][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.015][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.019][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:39.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:39.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.023][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:39.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:39.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.026][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:39.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:39.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.030][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:39.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:39.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.033][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:39.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:39.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:39.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:39.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.045][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2025-01-04 16:04:39.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:39.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:39.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:39.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:39.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:39.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:39.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:39.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:39.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:39.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:39.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:39.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.063][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:39.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:39.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.066][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:39.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:39.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.077][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:39.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:39.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.084][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:39.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:39.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:39.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:39.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.091][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:39.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:39.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.095][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.098][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.101][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:39.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:39.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.105][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:39.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:39.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.122][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.126][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.129][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:39.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:39.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.133][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:39.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:39.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.136][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:39.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:39.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.140][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:39.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:39.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.143][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:39.144][private$selectFields]
biodb.TRACE[2025-01-04 16:04:39.145][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:39.146][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:39.147][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:39.148][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:39.148][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:39.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.150][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.151][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:39.152][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:39.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.154][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.154][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.155][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.157][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.158][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:39.159][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:39.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.160][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.161][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:39.162][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:39.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.164][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.165][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.166][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.167][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.168][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:39.169][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:39.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.171][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.172][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.172][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.174][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.175][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.176][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.178][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.178][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.179][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.181][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.182][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:39.183][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:39.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.184][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.185][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:39.186][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:39.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.188][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.189][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:39.190][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:39.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.191][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.192][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:39.193][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:39.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.195][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.196][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.196][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.198][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.199][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:39.200][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:39.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.202][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.202][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:39.203][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:39.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.205][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.206][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.207][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.209][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.210][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:39.211][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:39.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.212][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.213][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.214][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.216][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.217][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.218][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.219][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.220][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.221][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.223][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.224][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:39.225][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:39.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.226][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.227][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:39.228][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:39.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.230][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.231][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:39.231][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:39.232][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:39.233][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:39.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.235][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.236][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:39.237][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:39.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.238][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.239][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.240][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.242][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.243][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:39.244][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:39.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.245][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.246][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:39.247][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:39.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.249][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.250][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.251][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.252][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.253][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.254][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.256][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.257][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.258][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.259][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.260][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.261][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.263][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.264][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:39.265][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:39.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.266][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.267][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:39.268][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:39.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.270][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.271][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:39.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:39.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:39.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:39.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:39.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:39.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:39.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.282][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:39.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:39.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.286][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:39.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:39.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.289][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:39.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:39.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.304][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:39.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:39.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.307][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:39.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:39.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.311][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:39.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:39.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:39.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:39.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.318][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:39.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:39.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:39.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:39.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.358][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.361][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.368][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.372][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:39.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:39.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.376][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:39.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:39.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.379][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:39.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:39.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.383][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:39.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:39.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.386][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:39.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:39.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.390][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:39.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:39.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.398][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2025-01-04 16:04:39.399][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:04:39.400][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:04:39.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:39.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:39.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:39.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:39.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:39.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:39.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:39.418][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:04:39.420][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:04:39.422][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2025-01-04 16:04:39.423][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:04:39.424][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2025-01-04 16:04:39.427][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:04:39.430][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:04:39.431][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2025-01-04 16:04:39.432][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:04:39.433][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2025-01-04 16:04:39.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:39.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:39.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:39.441][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:39.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:39.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:39.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:39.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:39.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:39.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:39.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:39.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:39.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:39.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:39.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:39.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:39.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:39.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:39.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:39.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:39.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:39.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:39.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:39.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:39.494][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:04:39.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:39.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:39.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:39.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:39.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:39.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:39.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:39.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:39.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:39.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:39.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:39.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.511][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:39.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:39.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.515][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:39.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:39.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.525][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:39.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:39.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.529][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:39.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:39.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.532][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:39.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:39.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:39.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:39.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.543][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.546][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:39.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:39.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.550][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:39.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:39.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.567][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.571][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.574][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:39.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:39.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.578][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:39.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:39.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.581][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:39.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:39.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.585][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:39.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:39.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.588][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:39.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:39.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.592][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:39.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:39.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.596][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:39.596][private$selectFields]
biodb.TRACE[2025-01-04 16:04:39.597][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:39.598][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:39.599][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:39.600][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:39.601][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:39.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.602][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.603][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:39.604][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:39.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.606][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.607][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.608][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.609][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.610][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:39.611][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:39.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.613][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.614][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:39.615][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:39.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.616][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.617][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.618][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.620][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.621][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:39.622][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:39.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.623][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.624][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.625][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.627][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.628][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.629][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.630][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.631][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.632][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.634][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.635][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:39.636][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:39.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.637][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.638][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:39.639][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:39.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.641][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.642][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:39.643][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:39.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.644][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.645][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:39.646][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:39.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.648][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.649][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:39.650][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:39.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.651][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.656][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.657][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.659][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.660][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:39.661][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:39.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.662][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.663][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:39.664][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:39.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.666][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.667][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.667][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.669][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.670][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:39.671][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:39.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.673][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.673][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.674][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.676][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.677][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.678][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.679][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.680][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.681][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.683][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.684][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:39.685][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:39.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.686][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.687][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:39.688][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:39.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.690][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.691][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:39.692][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:39.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.693][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.694][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:39.695][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:39.696][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:39.697][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:39.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.698][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.699][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:39.700][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:39.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.702][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.703][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.704][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.705][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.706][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:39.707][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:39.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.709][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.710][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:39.711][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:39.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.712][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.713][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.714][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.716][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.716][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:39.717][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:39.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.719][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.720][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.721][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.729][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.730][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.732][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.734][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.735][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.736][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.738][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.739][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:39.740][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:39.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.741][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.742][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:39.744][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:39.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.745][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.747][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:39.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:39.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:39.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:39.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:39.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:39.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:39.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.760][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:39.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:39.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.764][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:39.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:39.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.768][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:39.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:39.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.784][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:39.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:39.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.788][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:39.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:39.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.793][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:39.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:39.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:39.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:39.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:39.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:39.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.806][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:39.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:39.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.818][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.822][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:39.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:39.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.826][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:39.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:39.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.830][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:39.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:39.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.838][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.858][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.862][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.866][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.870][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:39.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:39.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.874][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:39.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:39.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.878][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:39.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:39.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.882][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:39.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:39.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.886][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:39.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:39.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.890][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:39.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:39.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.900][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-01-04 16:04:39.901][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:39.902][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:39.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:39.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:39.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:39.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:39.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:39.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:39.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:39.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:39.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:39.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.920][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:39.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:39.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.924][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:39.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:39.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:39.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.936][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:39.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:39.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.940][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:39.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:39.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:39.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:39.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.948][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:39.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:39.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.952][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:39.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.959][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:39.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:39.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.963][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:39.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:39.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:39.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:39.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.994][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:39.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:39.998][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:39.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.002][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:40.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:40.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.006][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:40.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:40.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.010][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:40.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:40.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.013][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:40.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:40.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.017][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:40.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:40.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.021][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:40.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:40.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.025][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:40.026][private$selectFields]
biodb.TRACE[2025-01-04 16:04:40.027][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:40.028][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:40.029][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:40.030][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:40.031][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:40.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.033][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.034][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:40.035][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:40.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.036][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.037][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.038][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.040][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.041][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:40.042][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:40.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.044][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.045][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:40.046][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:40.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.048][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.049][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.050][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.051][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.052][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:40.053][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:40.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.055][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.056][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.057][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.059][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.060][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.061][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.062][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.063][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.064][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.066][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.066][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:40.067][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:40.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.069][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.070][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:40.071][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:40.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.072][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.073][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:40.074][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:40.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.076][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.077][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:40.078][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:40.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.079][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.080][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:40.081][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:40.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.083][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.084][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.085][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.086][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.087][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:40.088][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:40.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.090][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.090][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:40.091][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:40.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.093][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.094][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.095][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.096][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.097][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:40.098][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:40.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.100][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.101][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.102][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.103][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.104][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.105][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.107][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.108][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.108][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.110][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.111][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:40.112][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:40.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.114][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.115][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:40.116][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:40.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.117][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.118][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:40.119][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:40.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.121][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.122][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:40.123][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:40.123][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:40.124][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:40.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.126][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.127][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:40.128][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:40.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.130][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.130][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.131][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.133][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.134][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:40.135][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:40.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.137][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.137][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:40.138][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:40.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.140][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.141][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.142][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.143][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.144][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:40.145][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:40.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.147][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.148][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.149][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.150][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.151][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.152][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.154][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.155][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.156][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.157][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.158][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:40.159][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:40.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.161][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.162][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:40.163][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:40.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.164][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.165][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:40.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:40.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:40.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:40.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:40.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:40.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:40.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.177][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:40.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:40.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.180][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:40.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:40.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.184][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:40.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:40.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.198][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:40.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:40.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.202][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:40.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:40.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.205][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:40.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:40.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:40.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:40.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.212][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:40.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:40.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:40.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:40.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.227][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.230][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:40.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:40.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.234][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:40.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:40.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.237][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:40.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:40.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.259][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.263][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.266][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.270][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.277][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:40.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:40.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.281][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:40.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:40.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.284][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:40.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:40.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.288][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:40.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:40.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.291][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:40.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:40.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.295][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:40.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:40.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.303][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-01-04 16:04:40.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:40.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:40.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:40.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:40.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:40.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:40.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:40.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:40.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:40.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:40.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:40.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.320][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:40.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:40.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.324][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:40.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:40.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.334][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:40.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:40.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.338][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:40.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:40.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:40.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:40.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:40.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:40.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.355][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:40.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:40.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.359][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:40.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:40.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.376][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.379][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.383][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:40.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:40.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:40.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:40.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.390][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:40.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:40.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.393][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:40.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:40.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.397][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:40.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:40.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.400][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:40.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:40.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.404][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:40.405][private$selectFields]
biodb.TRACE[2025-01-04 16:04:40.406][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:40.407][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:40.407][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:40.408][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:40.409][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:40.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.411][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.412][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:40.413][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:40.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.414][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.415][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.416][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.418][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.419][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:40.420][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:40.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.421][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.422][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:40.423][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:40.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.425][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.426][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.427][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.428][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.429][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:40.430][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:40.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.432][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.433][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.433][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.435][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.436][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.437][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.439][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.440][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.440][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.442][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.443][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:40.444][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:40.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.446][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.446][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:40.447][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:40.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.449][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.450][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:40.451][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:40.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.453][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.453][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:40.454][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:40.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.456][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.457][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:40.458][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:40.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.460][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.460][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.461][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.463][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.464][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:40.465][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:40.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.466][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.467][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:40.468][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:40.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.470][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.471][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.472][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.473][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.474][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:40.475][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:40.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.477][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.478][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.479][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.480][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.481][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.482][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.484][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.485][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.486][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.487][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.488][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:40.489][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:40.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.491][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.492][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:40.493][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:40.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.494][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.495][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:40.496][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:40.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.498][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.499][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:40.500][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:40.500][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:40.501][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:40.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.503][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.504][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:40.505][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:40.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.506][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.507][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.508][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.510][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.511][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:40.512][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:40.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.513][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.514][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:40.515][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:40.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.517][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.518][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.519][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.520][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.521][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.522][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.524][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.525][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.526][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.527][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.528][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.529][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.531][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.532][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:40.533][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:40.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.534][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.535][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:40.536][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:40.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.538][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.539][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:40.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:40.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:40.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:40.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:40.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:40.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:40.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.550][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:40.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:40.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.554][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:40.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:40.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.564][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:40.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:40.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.578][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:40.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:40.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.582][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:40.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:40.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.585][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:40.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:40.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:40.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:40.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:40.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:40.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:40.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:40.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.631][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.634][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.638][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.641][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:40.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:40.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.645][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:40.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:40.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.648][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:40.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:40.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.652][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:40.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:40.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.655][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:40.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:40.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.659][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:40.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:40.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.667][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-01-04 16:04:40.668][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:04:40.668][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:04:40.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:40.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:40.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:40.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:40.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:40.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:40.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:40.682][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:04:40.684][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:04:40.686][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7269bbea581f1e243800f8ee4e0f4fdb".
biodb.TRACE[2025-01-04 16:04:40.687][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:04:40.688][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7269bbea581f1e243800f8ee4e0f4fdb.content".
biodb.DEBUG[2025-01-04 16:04:40.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:40.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:40.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:40.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:40.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:40.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:40.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:40.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:40.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:40.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:40.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:40.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:40.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:40.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:40.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:40.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:40.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:40.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:40.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:40.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:40.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:40.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:40.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:40.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:40.748][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:04:40.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:40.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:40.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:40.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:40.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:40.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:40.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:40.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:40.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:40.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:40.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:40.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.765][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:40.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:40.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.769][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:40.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:40.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.779][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:40.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:40.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.783][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:40.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:40.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:40.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:40.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:40.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:40.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.794][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.801][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:40.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:40.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.805][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:40.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:40.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.819][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.822][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.826][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.829][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:40.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:40.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.833][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:40.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:40.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.836][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:40.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:40.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.840][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:40.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:40.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.848][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:40.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:40.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.851][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:40.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:40.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.855][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:40.855][private$selectFields]
biodb.TRACE[2025-01-04 16:04:40.856][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:40.857][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:40.858][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:40.859][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:40.860][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:40.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.861][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.862][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:40.863][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:40.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.865][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.866][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.867][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.868][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.869][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:40.870][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:40.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.872][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.872][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:40.873][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:40.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.875][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.876][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.877][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.879][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.879][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:40.880][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:40.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.882][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.883][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.884][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.885][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.886][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.887][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.889][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.890][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.891][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.892][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.893][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:40.894][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:40.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.896][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.897][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:40.898][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:40.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.899][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.900][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:40.901][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:40.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.903][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.903][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:40.904][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:40.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.906][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.907][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:40.908][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:40.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.909][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.910][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.911][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.913][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.914][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:40.915][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:40.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.916][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.917][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:40.918][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:40.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.920][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.921][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.921][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.923][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.924][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:40.925][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:40.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.927][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.927][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.928][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.930][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.931][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.932][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.933][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.934][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.935][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.937][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.938][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:40.939][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:40.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.940][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.941][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:40.942][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:40.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.944][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.944][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:40.945][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:40.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.947][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.948][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:40.949][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:40.950][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:40.951][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:40.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.952][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.953][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:40.954][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:40.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.956][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.956][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.957][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:40.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.959][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.960][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:40.961][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:40.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.962][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.963][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:40.964][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:40.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.966][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.967][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.968][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:40.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.969][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.970][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:40.971][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:40.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.973][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.974][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.975][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:40.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.976][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.977][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.978][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:40.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.980][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.981][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.982][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:40.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.983][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.984][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:40.985][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:40.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.987][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.988][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:40.989][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:40.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.990][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.991][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:40.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:40.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:40.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:40.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:40.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:40.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:40.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:41.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:41.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.003][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:41.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:41.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.006][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:41.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:41.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.010][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:41.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:41.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.024][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:41.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:41.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.028][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:41.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:41.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.032][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:41.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:41.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:41.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:41.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.039][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:41.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:41.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:41.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:41.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.046][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.053][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.057][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:41.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:41.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.060][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:41.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:41.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.064][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:41.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:41.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.089][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.092][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.096][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.100][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:41.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:41.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.103][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:41.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:41.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.107][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:41.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:41.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.110][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:41.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:41.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.114][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:41.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:41.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.117][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:41.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:41.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.126][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-01-04 16:04:41.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:41.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:41.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:41.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:41.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:41.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:41.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:41.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:41.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:41.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:41.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:41.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.148][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:41.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:41.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.152][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:41.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:41.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.163][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:41.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:41.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.166][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:41.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:41.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.170][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:41.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:41.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:41.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:41.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.178][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.181][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.185][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:41.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:41.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.189][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:41.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:41.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.206][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.210][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.213][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:41.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:41.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.216][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:41.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:41.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.220][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:41.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:41.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.223][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:41.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:41.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.227][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:41.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:41.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.230][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:41.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:41.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.234][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:41.235][private$selectFields]
biodb.TRACE[2025-01-04 16:04:41.235][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:41.236][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:41.237][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:41.238][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:41.239][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:41.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.240][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.241][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:41.242][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:41.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.244][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.245][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.246][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.247][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.248][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:41.249][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:41.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.251][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.252][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:41.252][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:41.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.254][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.255][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.256][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.258][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.259][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:41.260][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:41.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.261][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.262][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.263][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.265][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.266][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.266][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.268][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.269][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.270][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.272][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.272][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:41.273][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:41.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.275][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.276][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:41.277][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:41.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.279][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.279][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:41.280][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:41.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.282][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.283][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:41.284][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:41.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.286][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.286][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:41.287][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:41.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.289][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.290][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.291][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.292][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.293][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:41.294][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:41.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.296][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.297][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:41.298][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:41.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.299][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.300][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.301][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.303][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.304][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:41.305][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:41.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.306][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.307][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.308][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.310][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.311][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.312][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.313][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.314][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.315][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.317][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.318][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:41.319][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:41.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.320][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.321][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:41.322][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:41.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.324][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.325][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:41.325][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:41.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.327][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.328][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:41.329][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:41.330][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:41.331][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:41.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.332][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.333][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:41.334][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:41.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.336][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.337][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.338][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.339][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.340][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:41.341][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:41.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.343][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.344][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:41.344][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:41.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.346][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.347][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.348][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.350][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.350][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.351][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.353][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.354][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.355][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.356][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.357][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.358][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.360][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.361][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:41.362][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:41.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.363][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.364][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:41.365][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:41.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.367][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.368][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:41.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:41.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:41.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:41.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:41.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:41.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:41.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.379][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:41.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:41.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.383][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:41.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:41.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.386][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:41.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:41.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.401][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:41.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:41.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.404][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:41.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:41.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.408][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:41.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:41.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:41.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:41.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:41.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:41.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:41.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:41.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.458][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.461][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.465][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.468][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:41.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:41.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.472][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:41.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:41.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.475][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:41.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:41.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.479][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:41.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:41.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.482][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:41.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:41.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.486][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:41.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:41.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.494][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2025-01-04 16:04:41.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:41.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:41.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:41.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:41.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:41.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:41.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:41.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:41.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:41.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:41.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:41.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.511][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:41.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:41.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.514][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:41.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:41.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.524][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:41.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:41.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.528][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:41.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:41.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.531][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:41.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:41.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.535][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:41.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:41.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.538][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.545][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:41.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:41.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.549][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:41.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:41.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.566][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.570][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.573][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:41.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:41.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.577][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:41.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:41.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.580][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:41.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:41.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.584][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:41.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:41.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.587][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:41.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:41.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.591][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:41.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:41.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.594][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:41.595][private$selectFields]
biodb.TRACE[2025-01-04 16:04:41.596][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:41.597][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:41.598][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:41.599][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:41.600][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:41.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.601][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.602][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:41.603][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:41.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.605][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.606][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.606][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.608][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.609][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:41.610][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:41.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.612][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.612][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:41.613][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:41.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.615][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.616][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.617][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.619][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.619][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:41.620][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:41.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.622][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.623][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.624][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.625][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.626][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.627][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.629][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.630][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.631][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.632][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.633][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:41.634][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:41.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.636][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.637][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:41.638][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:41.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.639][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.640][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:41.641][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:41.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.643][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.644][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:41.645][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:41.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.646][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.647][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:41.648][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:41.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.650][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.651][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.652][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.653][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.654][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:41.655][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:41.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.657][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.658][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:41.658][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:41.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.660][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.661][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.662][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.664][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.664][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:41.665][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:41.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.667][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.668][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.669][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.671][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.671][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.672][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.674][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.675][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.676][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.678][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.678][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:41.679][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:41.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.681][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.682][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:41.683][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:41.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.684][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.685][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:41.686][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:41.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.688][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.689][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:41.690][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:41.691][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:41.692][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:41.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.693][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.694][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:41.695][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:41.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.697][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.698][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.702][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.704][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.705][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:41.706][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:41.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.708][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.709][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:41.709][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:41.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.711][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.712][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.713][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.714][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.715][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.716][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.718][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.719][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.720][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.721][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.722][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.723][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.725][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.726][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:41.726][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:41.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.728][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.729][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:41.730][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:41.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.732][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.732][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:41.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:41.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:41.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:41.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:41.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:41.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:41.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.744][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:41.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:41.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.747][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:41.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:41.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.751][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:41.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:41.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.765][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:41.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:41.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.769][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:41.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:41.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.772][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:41.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:41.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:41.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:41.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.779][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:41.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:41.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.782][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:41.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:41.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.789][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:41.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.817][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.821][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.825][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:41.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.828][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:41.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:41.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.832][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:41.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:41.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.835][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:41.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:41.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.839][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:41.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:41.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.842][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:41.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:41.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.846][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:41.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:41.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.854][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2025-01-04 16:04:41.855][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:04:41.856][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-01-04 16:04:41.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:41.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:41.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:41.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:41.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:41.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:41.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-01-04 16:04:41.869][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2025-01-04 16:04:41.872][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-01-04 16:04:41.873][cch$loadFileContent] Trying to load 1 files from cache: [1]: "acfa4b558978abf12409c2b56e678d03".
biodb.TRACE[2025-01-04 16:04:41.874][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-01-04 16:04:41.875][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/acfa4b558978abf12409c2b56e678d03.content".
biodb.DEBUG[2025-01-04 16:04:41.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:41.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:41.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:41.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:41.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:41.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:41.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:41.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:41.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:41.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:41.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:41.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:41.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:41.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:41.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:41.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:41.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:41.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:41.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:41.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:41.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:41.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:41.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:41.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:41.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-01-04 16:04:41.936][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-01-04 16:04:41.937][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:41.938][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:41.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:41.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:41.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:41.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:41.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:41.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:41.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:41.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:41.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:41.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.953][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:41.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:41.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.956][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:41.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:41.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:41.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.967][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:41.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:41.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.970][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:41.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:41.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.974][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:41.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:41.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:41.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:41.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.981][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:41.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.992][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:41.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:41.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.996][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:41.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:41.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:41.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:41.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.013][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.016][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.020][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:42.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:42.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.023][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:42.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:42.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.027][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:42.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:42.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.030][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:42.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:42.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.034][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:42.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:42.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.037][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:42.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:42.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.041][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:42.042][private$selectFields]
biodb.TRACE[2025-01-04 16:04:42.042][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:42.043][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:42.044][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:42.045][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:42.046][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:42.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.047][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.048][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:42.049][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:42.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.051][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.052][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.053][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.054][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.055][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:42.056][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:42.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.058][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.059][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:42.059][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:42.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.061][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.062][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.063][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.065][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.065][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:42.066][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:42.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.068][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.069][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.070][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.071][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.072][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.073][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.075][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.076][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.077][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.078][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.079][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:42.080][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:42.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.082][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.083][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:42.083][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:42.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.085][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.086][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:42.087][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:42.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.089][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.089][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:42.090][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:42.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.092][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.093][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:42.094][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:42.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.095][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.096][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.097][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.099][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.100][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:42.101][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:42.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.102][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.103][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:42.104][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:42.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.106][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.107][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.108][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.109][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.110][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:42.111][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:42.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.113][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.114][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.115][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.116][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.117][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.118][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.120][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.121][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.122][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.123][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.124][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:42.125][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:42.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.127][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.128][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:42.129][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:42.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.130][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.131][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:42.132][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:42.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.134][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.135][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:42.135][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:42.136][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:42.137][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:42.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.139][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.140][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:42.141][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:42.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.142][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.143][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.144][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.146][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.147][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:42.148][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:42.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.149][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.150][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:42.151][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:42.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.153][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.154][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.154][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.156][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.157][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:42.158][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:42.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.160][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.160][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.161][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.163][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.164][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.165][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.167][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.167][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.168][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.170][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.171][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:42.172][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:42.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.173][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.174][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:42.175][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:42.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.177][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.178][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:42.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:42.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:42.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:42.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:42.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:42.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:42.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.190][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:42.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:42.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.194][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:42.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:42.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.197][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:42.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:42.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.211][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:42.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:42.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.215][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:42.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:42.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.218][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:42.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:42.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:42.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:42.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.226][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:42.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:42.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:42.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:42.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.236][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.240][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.243][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:42.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:42.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.247][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:42.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:42.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.250][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:42.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:42.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.280][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.283][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.287][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.290][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:42.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:42.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.294][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:42.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:42.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.297][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:42.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:42.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.301][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:42.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:42.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.304][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:42.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:42.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.308][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:42.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:42.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.316][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2025-01-04 16:04:42.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:42.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:42.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:42.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:42.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:42.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:42.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:42.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:42.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:42.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:42.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:42.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.333][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:42.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:42.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.336][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:42.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:42.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.347][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:42.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:42.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.351][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:42.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:42.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:42.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:42.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.358][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:42.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:42.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.362][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.365][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.369][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:42.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:42.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.373][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:42.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:42.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.391][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.394][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.398][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:42.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:42.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.402][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:42.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:42.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.405][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:42.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:42.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.409][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:42.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:42.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.412][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:42.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:42.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.416][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:42.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:42.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.419][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:42.420][private$selectFields]
biodb.TRACE[2025-01-04 16:04:42.421][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:42.422][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:42.422][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:42.423][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:42.424][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:42.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.426][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.427][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:42.428][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:42.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.429][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.430][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.431][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.433][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.434][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:42.435][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:42.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.436][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.437][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:42.438][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:42.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.440][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.441][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.442][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.443][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.444][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:42.445][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:42.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.447][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.448][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.448][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.450][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.451][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.452][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.454][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.454][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.455][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.457][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.458][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:42.459][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:42.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.461][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.461][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:42.462][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:42.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.464][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.465][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:42.466][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:42.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.468][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.468][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:42.469][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:42.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.471][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.472][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:42.473][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:42.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.474][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.475][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.476][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.478][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.479][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:42.480][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:42.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.481][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.482][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:42.483][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:42.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.485][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.486][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.487][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.488][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.489][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:42.490][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:42.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.492][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.493][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.494][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.495][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.496][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.497][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.499][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.500][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.501][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.502][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.503][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:42.504][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:42.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.506][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.507][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:42.507][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:42.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.509][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.510][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:42.511][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:42.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.513][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.513][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:42.514][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:42.515][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:42.516][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:42.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.518][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.519][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:42.520][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:42.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.521][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.522][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.523][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.525][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.526][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:42.527][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:42.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.528][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.529][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:42.530][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:42.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.532][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.533][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.534][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.535][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.536][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.537][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.539][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.540][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.540][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.542][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.543][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.544][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.546][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.547][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:42.547][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:42.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.549][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.550][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:42.551][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:42.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.557][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.558][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:42.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:42.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:42.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:42.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:42.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:42.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:42.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.569][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:42.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:42.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.573][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:42.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:42.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.576][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:42.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:42.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.590][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:42.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:42.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.594][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:42.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:42.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.597][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:42.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:42.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.601][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:42.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:42.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:42.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:42.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:42.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:42.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.643][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.646][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.650][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.653][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:42.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:42.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.657][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:42.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:42.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.660][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:42.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:42.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.664][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:42.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:42.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.667][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:42.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:42.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.671][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:42.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:42.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.679][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2025-01-04 16:04:42.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-01-04 16:04:42.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:42.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:42.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:42.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:42.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:42.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-01-04 16:04:42.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:42.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:42.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:42.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:42.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.696][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:42.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:42.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.700][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:42.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:42.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.710][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:42.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:42.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.714][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:42.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:42.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.717][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:42.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:42.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.721][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:42.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:42.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.724][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.731][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:42.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:42.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.735][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:42.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:42.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.753][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.756][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.760][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:42.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:42.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.763][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:42.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:42.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.767][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:42.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:42.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.770][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:42.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:42.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.774][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:42.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:42.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.777][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:42.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:42.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.781][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:42.782][private$selectFields]
biodb.TRACE[2025-01-04 16:04:42.783][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-01-04 16:04:42.783][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-01-04 16:04:42.784][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-01-04 16:04:42.785][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:42.786][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:42.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.788][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.789][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:42.790][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:42.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.791][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.792][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.793][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.795][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.796][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:42.796][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:42.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.798][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.799][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:42.800][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:42.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.802][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.803][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.803][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.805][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.806][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:42.807][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:42.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.809][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.810][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.810][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.812][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.813][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.814][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.816][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.817][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.817][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.819][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.820][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:42.821][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:42.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.823][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.823][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:42.824][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:42.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.826][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.827][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:42.828][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:42.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.830][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.830][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:42.831][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:42.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.833][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.834][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:42.835][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:42.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.841][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.842][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.843][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.845][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.846][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:42.847][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:42.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.848][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.849][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:42.850][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:42.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.852][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.853][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.854][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.855][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.856][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:42.857][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-01-04 16:04:42.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.859][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.860][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.861][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.862][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.863][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.864][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.866][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.867][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.868][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.869][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.870][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:42.871][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:42.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.873][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.874][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:42.874][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:42.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.876][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.877][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-01-04 16:04:42.878][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-01-04 16:04:42.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.880][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.880][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:42.881][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-01-04 16:04:42.882][ef$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:42.883][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:42.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.885][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.886][ef$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:42.887][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:42.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.888][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.889][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.890][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.892][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.893][ef$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:42.893][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:42.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.895][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.896][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:42.897][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:42.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.899][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.899][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.900][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.902][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.903][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.904][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.905][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.906][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.907][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.909][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.910][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.911][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:42.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.912][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.913][ef$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:42.914][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:42.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.916][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.916][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:42.917][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:42.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.919][ef$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.920][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-01-04 16:04:42.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:42.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:42.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:42.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:42.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-01-04 16:04:42.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-01-04 16:04:42.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.931][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:42.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:42.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.935][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:42.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:42.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.938][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-01-04 16:04:42.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-01-04 16:04:42.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-01-04 16:04:42.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.952][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:42.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:42.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.956][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:42.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:42.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.959][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-01-04 16:04:42.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-01-04 16:04:42.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:42.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:42.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.967][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:42.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:42.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.970][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-01-04 16:04:42.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-01-04 16:04:42.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.974][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.981][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-01-04 16:04:42.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-01-04 16:04:42.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:42.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:42.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:42.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:43.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:43.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:43.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:43.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:43.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-01-04 16:04:43.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:43.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:43.006][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:43.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:43.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:43.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:43.010][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:43.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:43.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:43.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:43.013][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-01-04 16:04:43.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-01-04 16:04:43.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:43.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:43.017][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:43.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:43.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:43.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:43.021][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:43.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:43.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:43.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:43.024][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-01-04 16:04:43.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-01-04 16:04:43.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:43.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:43.028][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:43.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:43.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:43.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:43.031][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:43.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:43.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:43.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:43.035][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-01-04 16:04:43.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-01-04 16:04:43.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:43.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:43.043][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2025-01-04 16:04:43.044][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-01-04 16:04:43.045][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-01-04 16:04:43.050][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-01-04 16:04:43.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-01-04 16:04:43.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:43.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:43.054][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-01-04 16:04:43.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-01-04 16:04:43.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:43.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-01-04 16:04:43.057][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-01-04 16:04:43.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-01-04 16:04:43.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-01-04 16:04:43.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-01-04 16:04:43.063][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-01-04 16:04:43.064][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2025-01-04 16:04:43.065][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-01-04 16:04:43.066][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-01-04 16:04:43.067][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-01-04 16:04:43.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-01-04 16:04:43.068][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-01-04 16:04:43.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-01-04 16:04:43.070][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-01-04 16:04:43.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1380 ]
> 
> proc.time()
   user  system elapsed 
 78.628   1.806 183.866

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.12.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.20-bioc-longtests/meat/biodbChebi.Rcheck’
* using R version 4.4.2 (2024-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.12.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: OK

Installation output

biodbChebi.Rcheck/00install.out

* installing *source* package ‘biodbChebi’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)